Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001716.1

Orthogroup ID

OG0015087

Physical Location & Seq

Genomic Coordinates Forward (+)

41624 .. 42429

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001716.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgacaagtggaggggtttcaaaatcaaagatatttcttctcagttcatgccgggaagctaagcgagtggatcaacgctacttcagcaagctaagtggaactgctgaaggatcaagcagaaagaagaaaagtcacgagcggccggatatggagagttcgagttcacagagcagcagctgggttccggatccacgcaccggaatatatattccgaaagggcatgaacgggtgatggatgatgtccctaaaggggcagcatctcttaataaccagactttctggctgaggaacgtggatggtgtacttgagaaacccgacccggatactgcccctgaccattactaccaaatgcatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

9.07

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19550
fragaria_vesca	FvH4_2g04480
malus_domestica	MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica	Prupe.8G140400_v2.0.a1
pyrus_communis	pycom05g09470
rosa_chinensis	RchiOBHm_Chr6g0253971
rosa_laevigata	RLG00000014952
rosa_multiflora	Rmu_sc0001716.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211360
rosa_rugosa	Rorug05G0548700
rosa_samantha	Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana	Rw6G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	139
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	4 cut(s)	78, 118, 182, 195
AcoI	YGGCCR	1 cut(s)	140
AcuI	CTGAAG	2 cut(s)	67, 126
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	197, 250
AgsI	TTSAA	1 cut(s)	21
AluBI	AGCT	3 cut(s)	59, 91, 177
AluI	AGCT	3 cut(s)	59, 91, 177
AlwI	GGATC	4 cut(s)	78, 118, 182, 195
AlwNI	CAGNNNCTG	1 cut(s)	177
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	3 cut(s)	171, 174, 254
AsuC2I	CCSGG	2 cut(s)	53, 320
AsuHPI	GGTGA	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	187
BauI	CACGAG	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	3 cut(s)	183, 186, 266
BccI	CCATC	2 cut(s)	226, 290
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	53, 320
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	4 cut(s)	140, 172, 175, 255
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	4 cut(s)	141, 173, 176, 256
Bme1390I	CCNGG	2 cut(s)	53, 320
BmiI	GGNNCC	2 cut(s)	183, 189
BmrFI	CCNGG	2 cut(s)	53, 320
BmsI	GCATC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	326
BpuMI	CCSGG	2 cut(s)	53, 320
BsaWI	WCCGGW	2 cut(s)	184, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 250
BseAI	TCCGGA	1 cut(s)	184
BseGI	GGATG	2 cut(s)	241, 301
BseLI	CCNNNNNNNGG	2 cut(s)	197, 250
BseMII	CTCAG	2 cut(s)	55, 275
BseX3I	CGGCCG	1 cut(s)	140
BseXI	GCAGC	3 cut(s)	183, 186, 266
BseYI	CCCAGC	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	142
BsiEI	CGRYCG	1 cut(s)	143
BsiSI	CCGG	5 cut(s)	52, 143, 185, 198, 320
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	197, 250
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	70, 110, 187
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	2 cut(s)	54, 276
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	183, 189
BspPI	GGATC	4 cut(s)	78, 118, 182, 195
BsrBI	CCGCTC	1 cut(s)	139
BssMI	GATC	3 cut(s)	70, 110, 187
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	41, 60, 92, 284
BstF5I	GGATG	2 cut(s)	241, 301
BstKTI	GATC	3 cut(s)	73, 113, 190
BstMBI	GATC	3 cut(s)	70, 110, 187
BstMCI	CGRYCG	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	51, 318
BstV1I	GCAGC	3 cut(s)	183, 186, 266
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BstZI	CGGCCG	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	241, 301
Cac8I	GCNNGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	177
Csp6I	GTAC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	2 cut(s)	48, 221
CviJI	RGCY	5 cut(s)	59, 91, 142, 177, 283
CviKI_1	RGCY	5 cut(s)	59, 91, 142, 177, 283
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	4 cut(s)	41, 60, 92, 284
DpnI	GATC	3 cut(s)	72, 112, 189
DpnII	GATC	3 cut(s)	70, 110, 187
EaeI	YGGCCR	1 cut(s)	140
EagI	CGGCCG	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	140
Eco52I	CGGCCG	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	67, 126
EcoT22I	ATGCAT	1 cut(s)	354
FaeI	CATG	2 cut(s)	51, 224
FaiI	YATR	7 cut(s)	49, 149, 205, 207, 222, 354, 356
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	47, 220
FauNDI	CATATG	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	140, 172, 175, 255
FokI	GGATG	2 cut(s)	248, 308
Fsp4HI	GCNGC	4 cut(s)	140, 172, 175, 255
GluI	GCNGC	4 cut(s)	140, 172, 175, 255
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	5 cut(s)	52, 143, 185, 198, 320
Hin1II	CATG	2 cut(s)	51, 224
HpaII	CCGG	5 cut(s)	52, 143, 185, 198, 320
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	2 cut(s)	164, 302
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	134, 185
Hpy8I	GTNNAC	2 cut(s)	164, 302
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	84
HpyF3I	CTNAG	4 cut(s)	41, 60, 92, 284
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	51, 224
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	70, 110, 187
LpnPI	CCDG	9 cut(s)	65, 156, 163, 198, 211, 265, 284, 333, 345
Lsp1109I	GCAGC	3 cut(s)	183, 186, 266
LweI	GCATC	1 cut(s)	266
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	3 cut(s)	72, 112, 189
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	3 cut(s)	70, 110, 187
MboII	GAAGA	2 cut(s)	29, 136
MflI	RGATCY	1 cut(s)	187
MnlI	CCTC	2 cut(s)	5, 279
Mph1103I	ATGCAT	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	184
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	5 cut(s)	52, 143, 185, 198, 320
MspR9I	CCNGG	2 cut(s)	53, 320
MwoI	GCNNNNNNNGC	1 cut(s)	84
NciI	CCSGG	2 cut(s)	53, 320
NdeI	CATATG	1 cut(s)	354
NdeII	GATC	3 cut(s)	70, 110, 187
NlaIII	CATG	2 cut(s)	51, 224
NlaIV	GGNNCC	2 cut(s)	183, 189
NmuCI	GTSAC	1 cut(s)	131
NsiI	ATGCAT	1 cut(s)	354
PkrI	GCNGC	4 cut(s)	141, 173, 176, 256
PspFI	CCCAGC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	183, 189
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	140, 172, 175, 255
Sau3AI	GATC	3 cut(s)	70, 110, 187
ScrFI	CCNGG	2 cut(s)	53, 320
SetI	ASST	4 cut(s)	61, 93, 179, 294
SfaNI	GCATC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
SsiI	CCGC	1 cut(s)	139
StyD4I	CCNGG	2 cut(s)	51, 318
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	158
TatI	WGTACW	1 cut(s)	301
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	131
TseI	GCWGC	3 cut(s)	171, 174, 254
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	36, 237
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.