MD05G1096000.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015087
Physical Location & Seq
Reverse (-)
20230705 .. 20231422
718 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1096000.v1.1.491

Sequence Viewer

Length: 414 bp
ATGCTGATGGCCATGACGAGAGGCGGGGTGGCAAAATCGAAGATGTTTATGCTTAGTTCATATTACAGGGAAGCTAAGCACGCGCAAGGAGATCATCGACGCCATTTCAGTAGCAAGCTGAGGGGAGCTCCAGAAAACATATCAAGCAGAATGGTTGAGAGTGATAGTGAGGATACTGACATGATGGAAAGTGAGACTGGCAGTAATAGTTCATCTTCATGGAGGTGCAACTGGGTTCCACATCCAAGAACAGGAATATACGTTCCGAAAGGGCATGAAAAGGTCATGGATGATGTGCCTAAGGGAGCTGCTTCTCTTAACCAGACCTTCTGGCTCAGGAACGTCGACGGAGTACTTGAGAAACCCGACCCGGATACTCCTCCTGAGCATTACTATCACTACAAGCATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

138

Amino Acids

15.68

Weight (kDa)

7.1

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 33 - 107 6.8e-07 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19550
fragaria_vesca FvH4_2g04480
malus_domestica MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica Prupe.8G140400_v2.0.a1
pyrus_communis pycom05g09470
rosa_chinensis RchiOBHm_Chr6g0253971
rosa_laevigata RLG00000014952
rosa_multiflora Rmu_sc0001716.1_g000012
rosa_roxburghii Rroxscaffold_7G00211360
rosa_rugosa Rorug05G0548700
rosa_samantha Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana Rw6G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 345
AccII CGCG 1 cut(s) 83
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 251
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 4 cut(s) 74, 118, 128, 308
AluI AGCT 4 cut(s) 74, 118, 128, 308
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 1 cut(s) 188
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 1 cut(s) 308
AspLEI GCGC 1 cut(s) 85
AsuC2I CCSGG 1 cut(s) 371
AxyI CCTNAGG 1 cut(s) 300
BalI TGGCCA 1 cut(s) 11
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 295
BccI CCATC 1 cut(s) 178
BciVI GTATCC 2 cut(s) 166, 367
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 188
BfuI GTATCC 2 cut(s) 166, 367
BisI GCNGC 1 cut(s) 309
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 310
BmcAI AGTACT 1 cut(s) 354
Bme1390I CCNGG 1 cut(s) 371
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 371
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BpmI CTGGAG 1 cut(s) 114
Bpu10I CCTNAGC 3 cut(s) 119, 335, 384
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 202, 236
Bse21I CCTNAGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 241, 295
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 3 cut(s) 110, 349, 375
BseNI ACTGG 2 cut(s) 202, 236
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 11
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 91
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 111, 348, 376
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 237
BsrI ACTGG 2 cut(s) 202, 236
BssMI GATC 1 cut(s) 91
BssNI GRCGYC 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 81, 116
BstDEI CTNAG 6 cut(s) 53, 75, 119, 300, 335, 384
BstF5I GGATG 2 cut(s) 241, 295
BstFNI CGCG 1 cut(s) 83
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSCI CCNGG 1 cut(s) 369
BstUI CGCG 1 cut(s) 83
BstV1I GCAGC 1 cut(s) 295
Bsu36I CCTNAGG 1 cut(s) 300
BsuI GTATCC 2 cut(s) 166, 367
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 241, 295
Cac8I GCNNGC 2 cut(s) 81, 116
CfoI GCGC 1 cut(s) 85
CseI GACGC 1 cut(s) 108
Csp6I GTAC 1 cut(s) 353
CviAII CATG 5 cut(s) 13, 181, 219, 275, 286
CviJI RGCY 6 cut(s) 11, 74, 118, 128, 308, 334
CviKI_1 RGCY 6 cut(s) 11, 74, 118, 128, 308, 334
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 6 cut(s) 53, 75, 119, 300, 335, 384
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 5 cut(s) 16, 184, 222, 278, 289
FatI CATG 5 cut(s) 12, 180, 218, 274, 285
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 1 cut(s) 408
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 309
FokI GGATG 2 cut(s) 228, 302
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 309
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 114
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 371
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 5 cut(s) 16, 184, 222, 278, 289
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HpaII CCGG 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 131, 337, 383
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 3 cut(s) 102, 347, 350
HpyAV CCTTC 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 261, 342
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 6 cut(s) 53, 75, 119, 300, 335, 384
HpySE526I ACGT 2 cut(s) 261, 342
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 5 cut(s) 16, 184, 222, 278, 289
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 3 cut(s) 125, 133, 305
Lsp1109I GCAGC 1 cut(s) 295
MaeII ACGT 2 cut(s) 261, 342
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 52, 207
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MnlI CCTC 5 cut(s) 14, 114, 163, 216, 390
Mox20I TGGCCA 1 cut(s) 11
MscI TGGCCA 1 cut(s) 11
MseI TTAA 1 cut(s) 318
MslI CAYNNNNRTG 2 cut(s) 217, 223
Msp20I TGGCCA 1 cut(s) 11
MspI CCGG 1 cut(s) 371
MspR9I CCNGG 1 cut(s) 371
MvnI CGCG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 371
NdeI CATATG 1 cut(s) 408
NdeII GATC 1 cut(s) 91
NlaIII CATG 5 cut(s) 16, 184, 222, 278, 289
NlaIV GGNNCC 1 cut(s) 237
PkrI GCNGC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 2 cut(s) 217, 223
SacI GAGCTC 1 cut(s) 130
SalI GTCGAC 1 cut(s) 344
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 1 cut(s) 309
Sau3AI GATC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 371
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 76, 120, 130, 227, 264, 285, 310, 329, 345
SgrDI CGTCGACG 1 cut(s) 344
SmiMI CAYNNNNRTG 2 cut(s) 217, 223
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
SsiI CCGC 1 cut(s) 24
SstI GAGCTC 1 cut(s) 130
StyD4I CCNGG 1 cut(s) 369
TaiI ACGT 2 cut(s) 264, 345
TaqI TCGA 3 cut(s) 38, 97, 345
TatI WGTACW 1 cut(s) 352
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TseI GCWGC 1 cut(s) 308
TspDTI ATGAA 4 cut(s) 48, 201, 207, 291
TspGWI ACGGA 1 cut(s) 363
XmiI GTMKAC 1 cut(s) 345
ZrmI AGTACT 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.