AT3G19800

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013051
Physical Location & Seq
Forward (+)
6876043 .. 6877642
1600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19800.2

Sequence Viewer

Length: 690 bp
ATGGATGTACGTTGTTTGATCTCTCCAAATCTTTTGAACTCGAAGATTAAAGTTTCCGGCAATACTCATCACCTTCCCTTTTCTTCCCTCTCCAAGAAACACCAAGCTTCTTCCCCGATACAGGCAGCCATTAATGGAGGAGGGAGCTCAAAAACAGTGAAGCGTCTGATCACTTTATCTCCTAGTGAAGGCAAATGGAATGGAAATTGGAAGACTCAGTACGATGTCTCTCTGCGTGATCTTCAACTCCAAGACCTTGTTGAAGATGGCCCTCCCAATTCCCGTGTCTCTGTCGACCTCTCTGTCCAAAGGCACGCGAGCATGGGCCTCTCAGTAGATGGAAGAATCATGACTTCTATCGCAAGAAAGTGCAGCATTTGCTCTTCTCTTTATCCTCGACTGATCGATACAAGTTTCACCGTCTGGATTTTGCCATCAAGCCGGGAAAATCGAGCTTCAACACTGCCAGAAATTGGCGGCGATGATCCTTCGGTGATATATGTCAGACCTGGATATGAAGCTAACCTTGATTCCCTTGTGCAAGACACTATCCGCCTCACAACTTATGCTAAAGATATATGCTCGGATTCCTGCGAAAAATCGGAACCAACACTGCACTACGTTGGTCAGACAAATACAGCTTCTGTCGATAAGAGATGGTCAAGACTACTTGAACTTAAGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

229

Amino Acids

25.29

Weight (kDa)

9.08

Isoelectric Point (pI)

46.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YceD PF02620 109 - 224 2.1e-10 Large ribosomal RNA subunit accumulation protein YceD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB7I CCANNNNNTGG 1 cut(s) 473
AccI GTMKAC 1 cut(s) 294
AccII CGCG 1 cut(s) 317
AciI CCGC 2 cut(s) 477, 553
AclWI GGATC 1 cut(s) 479
AfaI GTAC 2 cut(s) 9, 221
AfiI CCNNNNNNNGG 3 cut(s) 121, 188, 473
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 5 cut(s) 37, 245, 263, 459, 674
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 5 cut(s) 107, 147, 455, 521, 641
AluI AGCT 5 cut(s) 107, 147, 455, 521, 641
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 232, 292
AlwI GGATC 1 cut(s) 479
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 2 cut(s) 268, 325
ApeKI GCWGC 2 cut(s) 125, 372
AseI ATTAAT 1 cut(s) 132
AspS9I GGNCC 2 cut(s) 269, 325
AsuC2I CCSGG 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 62, 409, 505
BanII GRGCYC 1 cut(s) 149
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 137, 384
BccI CCATC 4 cut(s) 260, 332, 442, 651
BciT130I CCWGG 1 cut(s) 510
BclI TGATCA 1 cut(s) 168
BcnI CCSGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 232, 292
BfaI CTAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 677
BisI GCNGC 3 cut(s) 126, 373, 478
BlsI GCNGC 3 cut(s) 127, 374, 479
Bme1390I CCNGG 2 cut(s) 443, 510
BmgT120I GGNCC 2 cut(s) 269, 325
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 2 cut(s) 443, 510
BpiI GAAGAC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 188, 473
BseBI CCWGG 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 405
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 3 cut(s) 121, 188, 473
BseMII CTCAG 2 cut(s) 230, 345
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 2 cut(s) 137, 384
BsgI GTGCAG 2 cut(s) 391, 599
Bsh1236I CGCG 1 cut(s) 317
BshFI GGCC 2 cut(s) 270, 327
BshVI ATCGAT 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 149
BsiSI CCGG 2 cut(s) 57, 442
BslI CCNNNNNNNGG 3 cut(s) 121, 188, 473
BsmAI GTCTC 2 cut(s) 232, 292
BsnI GGCC 2 cut(s) 270, 327
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 5 cut(s) 18, 168, 238, 402, 484
BspACI CCGC 2 cut(s) 477, 553
BspANI GGCC 2 cut(s) 270, 327
BspCNI CTCAG 2 cut(s) 229, 344
BspDI ATCGAT 1 cut(s) 405
BspFNI CGCG 1 cut(s) 317
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 1 cut(s) 479
BspQI GCTCTTC 1 cut(s) 388
BspTI CTTAAG 1 cut(s) 677
BssMI GATC 5 cut(s) 18, 168, 238, 402, 484
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 157, 421
Bst6I CTCTTC 1 cut(s) 388
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 315, 319
BstDEI CTNAG 2 cut(s) 216, 331
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 317
BstKTI GATC 5 cut(s) 21, 171, 241, 405, 487
BstMAI GTCTC 2 cut(s) 232, 292
BstMBI GATC 5 cut(s) 18, 168, 238, 402, 484
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 2 cut(s) 441, 508
BstUI CGCG 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 137, 384
BstV2I GAAGAC 1 cut(s) 218
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 2 cut(s) 270, 327
BsuTUI ATCGAT 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 495
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 461, 611
BtsIMutI CAGTG 3 cut(s) 162, 461, 611
Cac8I GCNNGC 2 cut(s) 315, 319
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 269, 325
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 8, 220
CviAII CATG 2 cut(s) 322, 349
CviJI RGCY 9 cut(s) 107, 128, 147, 270, 327, 441, 455, 521, 641
CviKI_1 RGCY 9 cut(s) 107, 128, 147, 270, 327, 441, 455, 521, 641
CviQI GTAC 2 cut(s) 8, 220
DdeI CTNAG 2 cut(s) 216, 331
DpnI GATC 5 cut(s) 20, 170, 240, 404, 486
DpnII GATC 5 cut(s) 18, 168, 238, 402, 484
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
EciI GGCGGA 1 cut(s) 542
Ecl136II GAGCTC 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 508
EcoT38I GRGCYC 1 cut(s) 149
FaeI CATG 2 cut(s) 325, 352
FaiI YATR 8 cut(s) 323, 350, 499, 501, 516, 567, 578, 580
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 2 cut(s) 321, 348
FbaI TGATCA 1 cut(s) 168
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 126, 373, 478
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 149
Fsp4HI GCNGC 3 cut(s) 126, 373, 478
FspBI CTAG 1 cut(s) 183
GluI GCNGC 3 cut(s) 126, 373, 478
HaeIII GGCC 2 cut(s) 270, 327
HapII CCGG 2 cut(s) 57, 442
HgaI GACGC 1 cut(s) 152
Hin1II CATG 2 cut(s) 325, 352
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 4 cut(s) 214, 345, 530, 587
HpaII CCGG 2 cut(s) 57, 442
HphI GGTGA 3 cut(s) 62, 409, 505
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 5 cut(s) 168, 506, 586, 604, 630
Hpy188III TCNNGA 3 cut(s) 349, 424, 663
Hpy8I GTNNAC 1 cut(s) 295
HpyAV CCTTC 3 cut(s) 83, 182, 498
HpyCH4III ACNGT 2 cut(s) 157, 421
HpyCH4IV ACGT 2 cut(s) 10, 621
HpyCH4V TGCA 3 cut(s) 372, 541, 616
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 216, 331
HpySE526I ACGT 2 cut(s) 10, 621
Hsp92II CATG 2 cut(s) 325, 352
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 5 cut(s) 18, 168, 238, 402, 484
LguI GCTCTTC 1 cut(s) 388
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 70, 107, 409, 455, 480, 495, 522, 604
Lsp1109I GCAGC 2 cut(s) 137, 384
MaeI CTAG 1 cut(s) 183
MaeII ACGT 2 cut(s) 10, 621
MalI GATC 5 cut(s) 20, 170, 240, 404, 486
MboI GATC 5 cut(s) 18, 168, 238, 402, 484
MboII GAAGA 8 cut(s) 55, 75, 102, 223, 233, 275, 354, 375
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 3 cut(s) 205, 277, 471
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 8 cut(s) 98, 131, 134, 282, 308, 338, 405, 566
MseI TTAA 3 cut(s) 48, 132, 678
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 2 cut(s) 57, 442
MspR9I CCNGG 2 cut(s) 443, 510
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 443
NdeII GATC 5 cut(s) 18, 168, 238, 402, 484
NlaIII CATG 2 cut(s) 325, 352
NlaIV GGNNCC 1 cut(s) 606
PagI TCATGA 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 345, 530, 587
PflMI CCANNNNNTGG 1 cut(s) 473
PkrI GCNGC 3 cut(s) 127, 374, 479
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PshBI ATTAAT 1 cut(s) 132
Psp124BI GAGCTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 2 cut(s) 269, 325
PstNI CAGNNNCTG 1 cut(s) 644
RsaI GTAC 2 cut(s) 9, 221
RsaNI GTAC 2 cut(s) 8, 220
SacI GAGCTC 1 cut(s) 149
SalI GTCGAC 1 cut(s) 293
SapI GCTCTTC 1 cut(s) 388
SaqAI TTAA 3 cut(s) 48, 132, 678
SatI GCNGC 3 cut(s) 126, 373, 478
Sau3AI GATC 5 cut(s) 18, 168, 238, 402, 484
Sau96I GGNCC 2 cut(s) 269, 325
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 443, 510
SduI GDGCHC 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 3 cut(s) 205, 277, 471
SsiI CCGC 2 cut(s) 477, 553
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 441, 508
TaaI ACNGT 2 cut(s) 157, 421
TaiI ACGT 2 cut(s) 13, 624
TaqI TCGA 6 cut(s) 41, 294, 397, 405, 451, 648
TasI AATT 3 cut(s) 205, 277, 471
TauI GCSGC 1 cut(s) 480
TfiI GAWTC 3 cut(s) 345, 530, 587
Tru1I TTAA 3 cut(s) 48, 132, 678
Tru9I TTAA 3 cut(s) 48, 132, 678
TscAI CASTG 3 cut(s) 162, 468, 618
TseI GCWGC 2 cut(s) 125, 372
TspDTI ATGAA 1 cut(s) 531
TspRI CASTG 3 cut(s) 162, 468, 618
Van91I CCANNNNNTGG 1 cut(s) 473
Vha464I CTTAAG 1 cut(s) 677
VspI ATTAAT 1 cut(s) 132
XagI CCTNNNNNAGG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.