AT3G19810

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014617
Physical Location & Seq
Reverse (-)
6877575 .. 6879543
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19810.1

Sequence Viewer

Length: 966 bp
ATGTCTCTGGTTTGCTCTTTATCTTGTGTAGCTCCCTTGCCACAGACTAAACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTATCTTCTCCCGCTGGCTATCCTAATTTTACCACCGGTATTAGGAAGCATATCAGTTACTTGTTCACTGAACCGATCAAGCTTCCTAGGCTAGCAAAGAGTCGGATATTAGTTAGTCAGGAGTCTTTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACTGGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGTTACACATGTTGAATATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGGTTGTCAACAGATGTCTCGAAGAAGAGAGCTTCTGCAATGGGACTTAGAGTGACAAAAGATGTCAAGGATTATCCAGATGGCACACCAGTTCAAGTTTCGGTTGATGTCATAAGGAAGAAGAAGAAGCTGAGACTTGATGGAATTGTCAGGACTGTTATCACACTCGGCTGCAACAGATGTGGTGAGTCAACAGGTGAGAGCATCTTCTCCAACTTCTCGCTATTACTAACCGAAGAGCCAGTTGAAGAACCCGATGTCATTGATCTAGGATTCACATTCGGTAATGACAAAGAAGAAGGCGAAGATGATGATGATAATGATGATTCATGGATAGATTGGGAGGATAAGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATATCTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTCTGCATGTAAAGGAATGTGCTTGAAGTGTGGTGCGAATCTGAATAAGAGGAAATGTGATTGTGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAATCTTAGAGAGCAAATGCAACAAAAAGAGGGACTAAGGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

321

Amino Acids

36.05

Weight (kDa)

5.15

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YceD PF02620 171 - 309 3.1e-23 Large ribosomal RNA subunit accumulation protein YceD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 52
AccII CGCG 1 cut(s) 58
AciI CCGC 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 138, 296, 360
AflII CTTAAG 1 cut(s) 91
AflIII ACRYGT 2 cut(s) 83, 334
AgeI ACCGGT 1 cut(s) 131
AgsI TTSAA 4 cut(s) 341, 470, 623, 844
AluBI AGCT 5 cut(s) 32, 178, 407, 505, 727
AluI AGCT 5 cut(s) 32, 178, 407, 505, 727
Alw26I GTCTC 5 cut(s) 9, 224, 397, 502, 771
ApeKI GCWGC 1 cut(s) 546
AsiGI ACCGGT 1 cut(s) 131
Asp700I GAANNNNTTC 1 cut(s) 322
AspA2I CCTAGG 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 911
AsuHPI GGTGA 5 cut(s) 279, 572, 584, 757, 790
AsuNHI GCTAGC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 911
AvrII CCTAGG 1 cut(s) 182
AxyI CCTNAGG 1 cut(s) 741
BbvI GCAGC 1 cut(s) 533
BccI CCATC 3 cut(s) 449, 509, 809
BciVI GTATCC 1 cut(s) 271
BcoDI GTCTC 5 cut(s) 9, 224, 397, 502, 771
BfaI CTAG 3 cut(s) 183, 188, 644
BfrI CTTAAG 1 cut(s) 91
BfuI GTATCC 1 cut(s) 271
BisI GCNGC 1 cut(s) 547
BlnI CCTAGG 1 cut(s) 182
BlsI GCNGC 1 cut(s) 548
Bme18I GGWCC 1 cut(s) 911
BmgT120I GGNCC 1 cut(s) 911
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 588
BmtI GCTAGC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 182, 290
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 296, 360
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 286, 464, 617
Bse21I CCTNAGG 1 cut(s) 741
Bse3DI GCAATG 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 182, 290
BseLI CCNNNNNNNGG 3 cut(s) 138, 296, 360
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 497, 732
BseNI ACTGG 3 cut(s) 286, 464, 617
BseXI GCAGC 1 cut(s) 533
Bsh1236I CGCG 1 cut(s) 58
BshTI ACCGGT 1 cut(s) 131
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 3 cut(s) 138, 296, 360
BsmAI GTCTC 5 cut(s) 9, 224, 397, 502, 771
BsmFI GGGAC 1 cut(s) 432
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 3 cut(s) 171, 259, 640
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 498, 733
BspFNI CGCG 1 cut(s) 58
BspOI GCTAGC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 606
BspTI CTTAAG 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 286, 464, 617
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 182, 290
BssMI GATC 3 cut(s) 171, 259, 640
BssT1I CCWWGG 2 cut(s) 182, 290
Bst4CI ACNGT 2 cut(s) 54, 532
Bst6I CTCTTC 3 cut(s) 395, 606, 885
BstAFI CTTAAG 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 112, 189
BstDEI CTNAG 6 cut(s) 355, 422, 506, 741, 926, 956
BstEII GGTNACC 1 cut(s) 285
BstENI CCTNNNNNAGG 2 cut(s) 294, 358
BstFNI CGCG 1 cut(s) 58
BstKTI GATC 3 cut(s) 174, 262, 643
BstMAI GTCTC 5 cut(s) 9, 224, 397, 502, 771
BstMBI GATC 3 cut(s) 171, 259, 640
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNSI RCATGY 3 cut(s) 87, 338, 828
BstPI GGTNACC 1 cut(s) 285
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 741
BsuI GTATCC 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 804
BtsIMutI CAGTG 2 cut(s) 162, 804
Cac8I GCNNGC 2 cut(s) 112, 189
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 911
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 87
CspAI ACCGGT 1 cut(s) 131
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 4 cut(s) 84, 335, 705, 825
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 6 cut(s) 355, 422, 506, 741, 926, 956
DpnI GATC 3 cut(s) 173, 261, 642
DpnII GATC 3 cut(s) 171, 259, 640
DrdI GACNNNNNNGTC 1 cut(s) 52
DseDI GACNNNNNNGTC 1 cut(s) 52
Eam1104I CTCTTC 3 cut(s) 395, 606, 885
EarI CTCTTC 3 cut(s) 395, 606, 885
Eco130I CCWWGG 2 cut(s) 182, 290
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 741
Eco91I GGTNACC 1 cut(s) 285
EcoNI CCTNNNNNAGG 2 cut(s) 294, 358
EcoO65I GGTNACC 1 cut(s) 285
EcoRV GATATC 1 cut(s) 760
EcoT14I CCWWGG 2 cut(s) 182, 290
ErhI CCWWGG 2 cut(s) 182, 290
FaeI CATG 4 cut(s) 87, 338, 708, 828
FalI AAGNNNNNCTT 2 cut(s) 85, 117
FaqI GGGAC 1 cut(s) 432
FatI CATG 4 cut(s) 83, 334, 704, 824
FauI CCCGC 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 547
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 3 cut(s) 183, 188, 644
GluI GCNGC 1 cut(s) 547
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 87, 338, 708, 828
HincII GTYRAC 2 cut(s) 384, 567
HindII GTYRAC 2 cut(s) 384, 567
HindIII AAGCTT 2 cut(s) 176, 725
HinfI GANTC 7 cut(s) 196, 218, 563, 648, 701, 818, 856
HpaII CCGG 1 cut(s) 132
HphI GGTGA 5 cut(s) 279, 572, 584, 757, 790
Hpy166II GTNNAC 3 cut(s) 162, 384, 567
Hpy188I TCNGA 4 cut(s) 72, 201, 861, 920
Hpy188III TCNNGA 5 cut(s) 215, 263, 394, 452, 526
Hpy8I GTNNAC 3 cut(s) 162, 384, 567
HpyAV CCTTC 4 cut(s) 290, 369, 668, 889
HpyCH4III ACNGT 2 cut(s) 54, 532
HpyCH4V TGCA 6 cut(s) 348, 413, 549, 787, 824, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 6 cut(s) 355, 422, 506, 741, 926, 956
Hsp92II CATG 4 cut(s) 87, 338, 708, 828
Kzo9I GATC 3 cut(s) 171, 259, 640
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 1 cut(s) 588
MaeI CTAG 3 cut(s) 183, 188, 644
MaeIII GTNAC 4 cut(s) 152, 285, 328, 427
MalI GATC 3 cut(s) 173, 261, 642
MboI GATC 3 cut(s) 171, 259, 640
MluCI AATT 3 cut(s) 121, 270, 519
MlyI GAGTC 3 cut(s) 205, 227, 572
MmeI TCCRAC 2 cut(s) 179, 612
MnlI CCTC 8 cut(s) 259, 268, 354, 712, 736, 861, 924, 943
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 1 cut(s) 92
MspA1I CMGCKG 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 1 cut(s) 132
MvnI CGCG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 3 cut(s) 171, 259, 640
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 87, 338, 708, 828
NmeAIII GCCGAG 1 cut(s) 522
NmuCI GTSAC 2 cut(s) 285, 427
NspI RCATGY 3 cut(s) 87, 338, 828
PciI ACATGT 2 cut(s) 83, 334
PciSI GCTCTTC 1 cut(s) 606
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 648, 701, 818, 856
PinAI ACCGGT 1 cut(s) 131
PkrI GCNGC 1 cut(s) 548
PleI GAGTC 3 cut(s) 204, 226, 571
PpsI GAGTC 3 cut(s) 204, 226, 571
PscI ACATGT 2 cut(s) 83, 334
PspEI GGTNACC 1 cut(s) 285
PspPI GGNCC 1 cut(s) 911
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 3 cut(s) 171, 259, 640
Sau96I GGNCC 1 cut(s) 911
SchI GAGTC 3 cut(s) 205, 227, 572
SfaNI GCATC 1 cut(s) 588
SinI GGWCC 1 cut(s) 911
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 3 cut(s) 121, 270, 519
SsiI CCGC 1 cut(s) 108
SspI AATATT 1 cut(s) 344
SspMI CTAG 3 cut(s) 183, 188, 644
StyI CCWWGG 2 cut(s) 182, 290
TaaI ACNGT 2 cut(s) 54, 532
TaqI TCGA 2 cut(s) 78, 395
TasI AATT 3 cut(s) 121, 270, 519
TfiI GAWTC 4 cut(s) 648, 701, 818, 856
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 2 cut(s) 169, 811
TseFI GTSAC 2 cut(s) 285, 427
TseI GCWGC 1 cut(s) 546
Tsp45I GTSAC 2 cut(s) 285, 427
TspDTI ATGAA 2 cut(s) 693, 719
TspRI CASTG 2 cut(s) 169, 811
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 911
XagI CCTNNNNNAGG 2 cut(s) 294, 358
XceI RCATGY 3 cut(s) 87, 338, 828
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 3 cut(s) 183, 188, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.