Rh1BG276500

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014617
Physical Location & Seq
Reverse (-)
41320174 .. 41322144
1971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG276500.1

Sequence Viewer

Length: 900 bp
ATGTCATTCGTAGTAACCTCATCCTCCATACTCACCTCTTCTTATTTTAACAAACACAGCGTTTCTAAGTTAAGATCTTGGTTGAGAAGGAAACCAAATGGTATTTCAATGTCCACTGTGATCAATTGCACAAAACCCAATTTTCAATCCTTCACTGATGAGGACACAGTTTTTCTTGATTTGGGTGATCAAGGAAATGAAGATGGTGAAGATATAGATTCACCCTGGGAAGGGGCTGTTATTTACAAGAGAAACGCTTCGATAACACATGTTGAGTACTGTACAACATTAGAGAGGCTTGGCTTGGGAAACCTTTCTACAGAGGTCTCCAAATCTAGGGCTTCGGTGATGGGGTTACGGGTCACTAAAGCTGTGAAGGATTATCCAAATGGCACACCAGTTCAGATCTCTATTGACATCACAAGGAGGAAGCAGAAGTTGAGGCTTGATGGGATCATCAAAACTGTTATCACATTGACTTGCAACAGGTGTGGTGACCCAGCAGCTGAGTCCATCTTCTCCAACTTCTCACTTCTCCTAACTGATGAACCTGTAGAAGAACCTGATATCATCAATATGGGAGTGATATATGGAGACAAGGTTAAAACTCATACTGGATTTGGTGACCAAGGGGAGGAAGATGATGACGACTCAATTGATTTCGAGGATCAGCTGTATTTCCGCCCTGAGGACAAACAAATAGACATTTCAAAGCACATAAGAGACTCGGTACATCTGGAGATTACTATCTCTGCAACATGTAATCCAAATTGCAAGGGTCTGTGTCTCAATTGTGGTAAAAATTTGAACACTAGCAATTGTATTTGTGGCAAAGAGGAGGTAAAGAAGACTACTTTTGGACCTCTTGGAAATTTAAAGAAGCAAATGCAGCGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

299

Amino Acids

33.32

Weight (kDa)

5.65

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YceD PF02620 149 - 293 2.3e-21 Large ribosomal RNA subunit accumulation protein YceD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 682
AclWI GGATC 2 cut(s) 461, 675
AcsI RAATTY 2 cut(s) 802, 871
AfaI GTAC 3 cut(s) 278, 283, 732
AfiI CCNNNNNNNGG 5 cut(s) 230, 231, 336, 634, 688
AflIII ACRYGT 2 cut(s) 268, 758
AgsI TTSAA 4 cut(s) 108, 146, 711, 808
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 3 cut(s) 371, 506, 673
AluI AGCT 3 cut(s) 371, 506, 673
Alw26I GTCTC 4 cut(s) 331, 588, 717, 791
AlwI GGATC 2 cut(s) 461, 675
AlwNI CAGNNNCTG 1 cut(s) 506
ApeKI GCWGC 2 cut(s) 503, 889
ApoI RAATTY 2 cut(s) 802, 871
Asp700I GAANNNNTTC 2 cut(s) 256, 313
AspS9I GGNCC 1 cut(s) 860
AsuHPI GGTGA 7 cut(s) 25, 197, 213, 218, 358, 506, 635
AvaII GGWCC 1 cut(s) 860
AxyI CCTNAGG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 854
BbvI GCAGC 1 cut(s) 515
BccI CCATC 4 cut(s) 197, 343, 443, 521
BciT130I CCWGG 1 cut(s) 226
BclI TGATCA 2 cut(s) 120, 187
BcoDI GTCTC 4 cut(s) 331, 588, 717, 791
BfaI CTAG 2 cut(s) 336, 813
BfmI CTRYAG 2 cut(s) 318, 552
BglII AGATCT 2 cut(s) 74, 405
BisI GCNGC 2 cut(s) 504, 890
BlsI GCNGC 2 cut(s) 505, 891
BmcAI AGTACT 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 860
BmgT120I GGNCC 1 cut(s) 860
BmrFI CCNGG 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 854
BpmI CTGGAG 1 cut(s) 758
BsaBI GATNNNNATC 1 cut(s) 746
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 224, 225, 628
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 5 cut(s) 230, 231, 336, 634, 688
Bse1I ACTGG 2 cut(s) 398, 619
Bse21I CCTNAGG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 3 cut(s) 224, 225, 628
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 5 cut(s) 230, 231, 336, 634, 688
BseMII CTCAG 2 cut(s) 498, 678
BseNI ACTGG 2 cut(s) 398, 619
BseRI GAGGAG 1 cut(s) 851
BseXI GCAGC 1 cut(s) 515
BseYI CCCAGC 1 cut(s) 499
BslI CCNNNNNNNGG 5 cut(s) 230, 231, 336, 634, 688
BsmAI GTCTC 4 cut(s) 331, 588, 717, 791
Bso31I GGTCTC 1 cut(s) 331
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 6 cut(s) 74, 120, 187, 405, 453, 667
BspACI CCGC 1 cut(s) 682
BspCNI CTCAG 2 cut(s) 499, 679
BspPI GGATC 2 cut(s) 461, 675
BspTNI GGTCTC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 281
BsrI ACTGG 2 cut(s) 398, 619
BssECI CCNNGG 3 cut(s) 224, 225, 628
BssMI GATC 6 cut(s) 74, 120, 187, 405, 453, 667
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 4 cut(s) 118, 169, 281, 466
Bst6I CTCTTC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 281
BstDEI CTNAG 3 cut(s) 66, 507, 687
BstEII GGTNACC 2 cut(s) 494, 623
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 6 cut(s) 77, 123, 190, 408, 456, 670
BstMAI GTCTC 4 cut(s) 331, 588, 717, 791
BstMBI GATC 6 cut(s) 74, 120, 187, 405, 453, 667
BstMWI GCNNNNNNNGC 1 cut(s) 889
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 2 cut(s) 272, 762
BstPI GGTNACC 2 cut(s) 494, 623
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 2 cut(s) 318, 552
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 854
BstX2I RGATCY 2 cut(s) 74, 405
BstYI RGATCY 2 cut(s) 74, 405
Bsu36I CCTNAGG 1 cut(s) 687
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 114, 153
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 1 cut(s) 860
Csp6I GTAC 3 cut(s) 277, 282, 731
CspCI CAANNNNNGTGG 2 cut(s) 472, 507
CviAII CATG 2 cut(s) 269, 759
CviJI RGCY 8 cut(s) 236, 298, 303, 341, 371, 445, 506, 673
CviKI_1 RGCY 8 cut(s) 236, 298, 303, 341, 371, 445, 506, 673
CviQI GTAC 3 cut(s) 277, 282, 731
DdeI CTNAG 3 cut(s) 66, 507, 687
DpnI GATC 6 cut(s) 76, 122, 189, 407, 455, 669
DpnII GATC 6 cut(s) 74, 120, 187, 405, 453, 667
DraI TTTAAA 1 cut(s) 876
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 671
Eco130I CCWWGG 1 cut(s) 628
Eco31I GGTCTC 1 cut(s) 331
Eco32I GATATC 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 860
Eco81I CCTNAGG 1 cut(s) 687
Eco91I GGTNACC 2 cut(s) 494, 623
EcoO65I GGTNACC 2 cut(s) 494, 623
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 628
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 2 cut(s) 272, 762
FaiI YATR 9 cut(s) 29, 215, 270, 578, 589, 591, 612, 719, 760
FatI CATG 2 cut(s) 268, 758
FbaI TGATCA 2 cut(s) 120, 187
Fnu4HI GCNGC 2 cut(s) 504, 890
FokI GGATG 1 cut(s) 7
Fsp4HI GCNGC 2 cut(s) 504, 890
FspBI CTAG 2 cut(s) 336, 813
GluI GCNGC 2 cut(s) 504, 890
GsaI CCCAGC 1 cut(s) 503
GsuI CTGGAG 1 cut(s) 758
Hin1II CATG 2 cut(s) 272, 762
HinfI GANTC 4 cut(s) 218, 509, 650, 725
HphI GGTGA 7 cut(s) 25, 197, 213, 218, 358, 506, 635
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 1 cut(s) 405
Hpy188III TCNNGA 2 cut(s) 176, 737
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 4 cut(s) 81, 160, 224, 370
HpyCH4III ACNGT 4 cut(s) 118, 169, 281, 466
HpyCH4V TGCA 5 cut(s) 129, 483, 755, 774, 889
HpyF10VI GCNNNNNNNGC 1 cut(s) 889
HpyF3I CTNAG 3 cut(s) 66, 507, 687
Hsp92II CATG 2 cut(s) 272, 762
Ksp22I TGATCA 2 cut(s) 120, 187
Kzo9I GATC 6 cut(s) 74, 120, 187, 405, 453, 667
Lsp1109I GCAGC 1 cut(s) 515
MaeI CTAG 2 cut(s) 336, 813
MaeIII GTNAC 5 cut(s) 13, 354, 361, 494, 623
MalI GATC 6 cut(s) 76, 122, 189, 407, 455, 669
MboI GATC 6 cut(s) 74, 120, 187, 405, 453, 667
MboII GAAGA 7 cut(s) 30, 212, 221, 508, 569, 650, 859
MfeI CAATTG 4 cut(s) 124, 654, 790, 817
MflI RGATCY 2 cut(s) 74, 405
MluCI AATT 8 cut(s) 124, 139, 654, 769, 790, 802, 817, 871
MlyI GAGTC 3 cut(s) 518, 644, 719
MmeI TCCRAC 1 cut(s) 546
MroXI GAANNNNTTC 2 cut(s) 256, 313
MseI TTAA 4 cut(s) 48, 71, 603, 875
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 2 cut(s) 506, 673
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 4 cut(s) 124, 654, 790, 817
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 889
NdeII GATC 6 cut(s) 74, 120, 187, 405, 453, 667
NlaIII CATG 2 cut(s) 272, 762
NmuCI GTSAC 3 cut(s) 361, 494, 623
NspI RCATGY 2 cut(s) 272, 762
PasI CCCWGGG 1 cut(s) 225
PciI ACATGT 2 cut(s) 268, 758
PdmI GAANNNNTTC 2 cut(s) 256, 313
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 505, 891
PleI GAGTC 3 cut(s) 517, 644, 719
PpsI GAGTC 3 cut(s) 517, 644, 719
PscI ACATGT 2 cut(s) 268, 758
Psp6I CCWGG 1 cut(s) 224
PspEI GGTNACC 2 cut(s) 494, 623
PspFI CCCAGC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 1 cut(s) 860
PstNI CAGNNNCTG 1 cut(s) 506
PsuI RGATCY 2 cut(s) 74, 405
PvuII CAGCTG 2 cut(s) 506, 673
RsaI GTAC 3 cut(s) 278, 283, 732
RsaNI GTAC 3 cut(s) 277, 282, 731
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 4 cut(s) 48, 71, 603, 875
SatI GCNGC 2 cut(s) 504, 890
Sau3AI GATC 6 cut(s) 74, 120, 187, 405, 453, 667
Sau96I GGNCC 1 cut(s) 860
ScaI AGTACT 1 cut(s) 278
SchI GAGTC 3 cut(s) 518, 644, 719
ScrFI CCNGG 1 cut(s) 226
SfcI CTRYAG 2 cut(s) 318, 552
SinI GGWCC 1 cut(s) 860
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 8 cut(s) 124, 139, 654, 769, 790, 802, 817, 871
SsiI CCGC 1 cut(s) 682
SspMI CTAG 2 cut(s) 336, 813
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 4 cut(s) 118, 169, 281, 466
TaqI TCGA 2 cut(s) 260, 663
TasI AATT 8 cut(s) 124, 139, 654, 769, 790, 802, 817, 871
TatI WGTACW 2 cut(s) 276, 281
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 4 cut(s) 48, 71, 603, 875
Tru9I TTAA 4 cut(s) 48, 71, 603, 875
TscAI CASTG 2 cut(s) 121, 160
TseFI GTSAC 3 cut(s) 361, 494, 623
TseI GCWGC 2 cut(s) 503, 889
Tsp45I GTSAC 3 cut(s) 361, 494, 623
TspDTI ATGAA 2 cut(s) 213, 561
TspRI CASTG 2 cut(s) 121, 160
VpaK11BI GGWCC 1 cut(s) 860
XapI RAATTY 2 cut(s) 802, 871
XceI RCATGY 2 cut(s) 272, 762
XmnI GAANNNNTTC 2 cut(s) 256, 313
XspI CTAG 2 cut(s) 336, 813
ZrmI AGTACT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.