Rh1AG313400

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014617
Physical Location & Seq
Reverse (-)
54614035 .. 54615995
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG313400.1

Sequence Viewer

Length: 981 bp
ATGTCATTCATAGTAACCTCATCCTCCATACTCACCTCTTCTTATTTTAACAAACACAGCGTTTCTAAGTTAAGATCTGGTGAGAATGCTTCTAAAGTTTCATACTTTCCCTTTATTCAATGTAAGTATCCATCTTGCATTACTGAGAATATCCATACAGGGTTGAGAAGGAAACCAAATGGTATTTCAATGTCCACTGTGATCAATTGCACAAAACCCAATTTTCAATCCTTCACTGATGAGGACACAGTTTTTCTTGATTTGGGTGATCAAGGAAATGAAGATGGTGAAGATATAGATTCACCCTGGGAAGGGGCTGTTATTTACAAGAGAAACGCTTCAATAACACATGTTGAGTACTGTACAACATTAGAGAGGCTTGGCTTGGGAAACCTTTCTACAGAGGTCTCCAAATCTAGGGCTTCGGTGATGGGGTTACGGGTCACTAAAGCTGTGAAGGATTATCCAAATGGCACACCAGTTCAGATCTCTATTGACATCACAAGGAGGAAGCAAAAGTTGAGGCTTGATGGGATCATCAAAACTGTTATCACATTGACTTGCAACAGGTGTGGTGACCCAGCAGCTGAGTCCATCTTCTCCAACTTTTCACTTCTCCTAACTGATGAACCTGTAGAAGAACCTGATATCATCAATATGGGAGTGATATATGGAGACAAGGTTAAAACTCATACTGGATTTGGTGACCAAGGGGAGGAAGATGATGACGACTCAATTGATTTCGAGGATCAGCTGTATTTCCGCCCTGAGGACAAACAAATAGACATTTCAAAGCACATAAGAGACTCGGTACATCTGGAGATTACTATCTCTGCAACATGTAATCCAAATTGCAAGGGTCTGTGTCTCAATTGTGGTAAAAATTTGAACACTAGCAATTGTATTTGTGGCAAAGAGGAGGTAAAGAAGACTACTTTTGGACCTCTTGGAAATTTAAAGAAGCAAATGCAGCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

326

Amino Acids

36.24

Weight (kDa)

5.62

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YceD PF02620 176 - 320 2.8e-21 Large ribosomal RNA subunit accumulation protein YceD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 763
AclWI GGATC 2 cut(s) 542, 756
AcsI RAATTY 2 cut(s) 883, 952
AfaI GTAC 3 cut(s) 359, 364, 813
AfiI CCNNNNNNNGG 5 cut(s) 311, 312, 417, 715, 769
AflIII ACRYGT 2 cut(s) 349, 839
AgsI TTSAA 6 cut(s) 119, 189, 227, 342, 792, 889
AjnI CCWGG 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 3 cut(s) 452, 587, 754
AluI AGCT 3 cut(s) 452, 587, 754
Alw26I GTCTC 4 cut(s) 412, 669, 798, 872
AlwI GGATC 2 cut(s) 542, 756
AlwNI CAGNNNCTG 1 cut(s) 587
ApeKI GCWGC 2 cut(s) 584, 970
ApoI RAATTY 2 cut(s) 883, 952
Asp700I GAANNNNTTC 2 cut(s) 337, 394
AspS9I GGNCC 1 cut(s) 941
AsuHPI GGTGA 8 cut(s) 25, 92, 278, 294, 299, 439, 587, 716
AvaII GGWCC 1 cut(s) 941
AxyI CCTNAGG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 935
BbvI GCAGC 1 cut(s) 596
BccI CCATC 5 cut(s) 139, 278, 424, 524, 602
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 138
BclI TGATCA 2 cut(s) 201, 268
BcoDI GTCTC 4 cut(s) 412, 669, 798, 872
BfaI CTAG 2 cut(s) 417, 894
BfmI CTRYAG 2 cut(s) 399, 633
BfuI GTATCC 1 cut(s) 138
BglII AGATCT 2 cut(s) 74, 486
BisI GCNGC 2 cut(s) 585, 971
BlsI GCNGC 2 cut(s) 586, 972
BmcAI AGTACT 1 cut(s) 359
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 941
BmrFI CCNGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 935
BpmI CTGGAG 1 cut(s) 839
BsaBI GATNNNNATC 1 cut(s) 827
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 305, 306, 709
BsaXI ACNNNNNCTCC 2 cut(s) 666, 696
Bsc4I CCNNNNNNNGG 5 cut(s) 311, 312, 417, 715, 769
Bse1I ACTGG 2 cut(s) 479, 700
Bse21I CCTNAGG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 827
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 3 cut(s) 305, 306, 709
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 827
BseLI CCNNNNNNNGG 5 cut(s) 311, 312, 417, 715, 769
BseMII CTCAG 3 cut(s) 135, 579, 759
BseNI ACTGG 2 cut(s) 479, 700
BseRI GAGGAG 1 cut(s) 932
BseXI GCAGC 1 cut(s) 596
BseYI CCCAGC 1 cut(s) 580
BslI CCNNNNNNNGG 5 cut(s) 311, 312, 417, 715, 769
BsmAI GTCTC 4 cut(s) 412, 669, 798, 872
BsmI GAATGC 1 cut(s) 91
Bso31I GGTCTC 1 cut(s) 412
Bsp1407I TGTACA 1 cut(s) 362
Bsp143I GATC 6 cut(s) 74, 201, 268, 486, 534, 748
BspACI CCGC 1 cut(s) 763
BspCNI CTCAG 3 cut(s) 136, 580, 760
BspPI GGATC 2 cut(s) 542, 756
BspTNI GGTCTC 1 cut(s) 412
BsrGI TGTACA 1 cut(s) 362
BsrI ACTGG 2 cut(s) 479, 700
BssECI CCNNGG 3 cut(s) 305, 306, 709
BssMI GATC 6 cut(s) 74, 201, 268, 486, 534, 748
BssT1I CCWWGG 1 cut(s) 709
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 4 cut(s) 199, 250, 362, 547
Bst6I CTCTTC 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 362
BstDEI CTNAG 4 cut(s) 66, 144, 588, 768
BstEII GGTNACC 2 cut(s) 575, 704
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 6 cut(s) 77, 204, 271, 489, 537, 751
BstMAI GTCTC 4 cut(s) 412, 669, 798, 872
BstMBI GATC 6 cut(s) 74, 201, 268, 486, 534, 748
BstMWI GCNNNNNNNGC 1 cut(s) 970
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 353, 843
BstPI GGTNACC 2 cut(s) 575, 704
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 2 cut(s) 399, 633
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 1 cut(s) 935
BstX2I RGATCY 2 cut(s) 74, 486
BstYI RGATCY 2 cut(s) 74, 486
Bsu36I CCTNAGG 1 cut(s) 768
BsuI GTATCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 2 cut(s) 195, 234
CaiI CAGNNNCTG 1 cut(s) 587
Cfr13I GGNCC 1 cut(s) 941
Csp6I GTAC 3 cut(s) 358, 363, 812
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 2 cut(s) 350, 840
CviJI RGCY 8 cut(s) 317, 379, 384, 422, 452, 526, 587, 754
CviKI_1 RGCY 8 cut(s) 317, 379, 384, 422, 452, 526, 587, 754
CviQI GTAC 3 cut(s) 358, 363, 812
DdeI CTNAG 4 cut(s) 66, 144, 588, 768
DpnI GATC 6 cut(s) 76, 203, 270, 488, 536, 750
DpnII GATC 6 cut(s) 74, 201, 268, 486, 534, 748
DraI TTTAAA 1 cut(s) 957
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 752
Eco130I CCWWGG 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 941
Eco81I CCTNAGG 1 cut(s) 768
Eco91I GGTNACC 2 cut(s) 575, 704
EcoO65I GGTNACC 2 cut(s) 575, 704
EcoRII CCWGG 1 cut(s) 305
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 2 cut(s) 353, 843
FatI CATG 2 cut(s) 349, 839
FbaI TGATCA 2 cut(s) 201, 268
Fnu4HI GCNGC 2 cut(s) 585, 971
FokI GGATG 1 cut(s) 7
Fsp4HI GCNGC 2 cut(s) 585, 971
FspBI CTAG 2 cut(s) 417, 894
GluI GCNGC 2 cut(s) 585, 971
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 1 cut(s) 839
Hin1II CATG 2 cut(s) 353, 843
HinfI GANTC 4 cut(s) 299, 590, 731, 806
HphI GGTGA 8 cut(s) 25, 92, 278, 294, 299, 439, 587, 716
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 2 cut(s) 257, 818
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 162, 241, 305, 451
HpyCH4III ACNGT 4 cut(s) 199, 250, 362, 547
HpyCH4V TGCA 6 cut(s) 138, 210, 564, 836, 855, 970
HpyF10VI GCNNNNNNNGC 1 cut(s) 970
HpyF3I CTNAG 4 cut(s) 66, 144, 588, 768
Hsp92II CATG 2 cut(s) 353, 843
Ksp22I TGATCA 2 cut(s) 201, 268
Kzo9I GATC 6 cut(s) 74, 201, 268, 486, 534, 748
Lsp1109I GCAGC 1 cut(s) 596
MaeI CTAG 2 cut(s) 417, 894
MaeIII GTNAC 5 cut(s) 13, 435, 442, 575, 704
MalI GATC 6 cut(s) 76, 203, 270, 488, 536, 750
MboI GATC 6 cut(s) 74, 201, 268, 486, 534, 748
MboII GAAGA 7 cut(s) 30, 293, 302, 589, 650, 731, 940
MfeI CAATTG 4 cut(s) 205, 735, 871, 898
MflI RGATCY 2 cut(s) 74, 486
MluCI AATT 8 cut(s) 205, 220, 735, 850, 871, 883, 898, 952
MlyI GAGTC 3 cut(s) 599, 725, 800
MmeI TCCRAC 1 cut(s) 627
MroXI GAANNNNTTC 2 cut(s) 337, 394
MseI TTAA 4 cut(s) 48, 71, 684, 956
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 587, 754
MspR9I CCNGG 1 cut(s) 307
MunI CAATTG 4 cut(s) 205, 735, 871, 898
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 970
NdeII GATC 6 cut(s) 74, 201, 268, 486, 534, 748
NlaIII CATG 2 cut(s) 353, 843
NmuCI GTSAC 3 cut(s) 442, 575, 704
NspI RCATGY 2 cut(s) 353, 843
PasI CCCWGGG 1 cut(s) 306
PciI ACATGT 2 cut(s) 349, 839
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 2 cut(s) 337, 394
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 586, 972
PleI GAGTC 3 cut(s) 598, 725, 800
PpsI GAGTC 3 cut(s) 598, 725, 800
PscI ACATGT 2 cut(s) 349, 839
Psp6I CCWGG 1 cut(s) 305
PspEI GGTNACC 2 cut(s) 575, 704
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 1 cut(s) 305
PspPI GGNCC 1 cut(s) 941
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 74, 486
PvuII CAGCTG 2 cut(s) 587, 754
RsaI GTAC 3 cut(s) 359, 364, 813
RsaNI GTAC 3 cut(s) 358, 363, 812
RseI CAYNNNNRTG 1 cut(s) 656
SaqAI TTAA 4 cut(s) 48, 71, 684, 956
SatI GCNGC 2 cut(s) 585, 971
Sau3AI GATC 6 cut(s) 74, 201, 268, 486, 534, 748
Sau96I GGNCC 1 cut(s) 941
ScaI AGTACT 1 cut(s) 359
SchI GAGTC 3 cut(s) 599, 725, 800
ScrFI CCNGG 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 399, 633
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 1 cut(s) 656
Sse9I AATT 8 cut(s) 205, 220, 735, 850, 871, 883, 898, 952
SsiI CCGC 1 cut(s) 763
SspMI CTAG 2 cut(s) 417, 894
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 4 cut(s) 199, 250, 362, 547
TaqI TCGA 1 cut(s) 744
TasI AATT 8 cut(s) 205, 220, 735, 850, 871, 883, 898, 952
TatI WGTACW 2 cut(s) 357, 362
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 4 cut(s) 48, 71, 684, 956
Tru9I TTAA 4 cut(s) 48, 71, 684, 956
TscAI CASTG 2 cut(s) 202, 241
TseFI GTSAC 3 cut(s) 442, 575, 704
TseI GCWGC 2 cut(s) 584, 970
Tsp45I GTSAC 3 cut(s) 442, 575, 704
TspDTI ATGAA 3 cut(s) 90, 294, 642
TspRI CASTG 2 cut(s) 202, 241
VpaK11BI GGWCC 1 cut(s) 941
XapI RAATTY 2 cut(s) 883, 952
XceI RCATGY 2 cut(s) 353, 843
XmnI GAANNNNTTC 2 cut(s) 337, 394
XspI CTAG 2 cut(s) 417, 894
ZrmI AGTACT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.