FvH4_7g19250

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014617
Physical Location & Seq
Reverse (-)
15917892 .. 15920461
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19250.t1

Sequence Viewer

Length: 975 bp
ATGTCTTTCGTAGTAACCTCATCCTCCATTGTCAGCTCCTCATATTTTAACCAGCGCAGTGGTTCTAGGTTGAGATGTTGTGGGAGTACTTGTAAAGTTTCATACTTTCCCTTTATTCGATGCAAGTATCTGTCTTGCATTACTGAGAATATCCATACAGTGTTGAGAAGGAAACCAAATGATATCTTAATGTCCACGGTGATGAATTGCACAAAACCCAATTTTCAATCCATCACTGATGAAGACACAGTTTTTATTGATTTGGGTGATCAAGGAAATGAAGATGGTGAAGATATAGATTCACCTTGGGAAGGGGCAGTTGTTTACAAGAGAAACGCTTCGATAACACATGTCGAGTACTGTACTACATTAGAGAGGCTTGGGTTGGGAAACCTTTCAACCACGGTCTCCAAATCTAGGGCTTCAGTGATGGGGTTACGGGTCACCAAAGCTGTGAAGGACTATCCAAATGGCACGCCAGTTCAGATTTCCATTGACATCACAAGGAGAAAGCAAAAACTGAGGCTTGATGGGATCATTAAAACTGTCATCACACTGACTTGCAACAGGTGTGGTGATCCAGCAGCTGAGTCCATATTCTCCAACTTCTCACTTCTCCTAACTGATGAACCCATAGAAGAACCTGATATAATCAATATGGGAGTGATATATGGAGACAATGCCAAAACTCATACGGGATTTGGTGGGGAGGAAAATGAGGACGACTCAATTGATTTCGAGGATCAGCTGTATTTCCGCCCAGAGGACAAAGAAATAGATATTTCAAAGCACATAAGAGACTCGGTGCATCTGGAGATTACTATCTCTGCGACATGCAACCCAAATTGCAAGGGGCTGTGTCTCAATTGTGGTAAAAATTTGAACACTAGCAATTGTATTTGTGGCAAACAGGAGGTAAAGAAGACTACTTTTGGACCTCTTGGAAATCTAAAGAAGCAAATGCAGAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

325

Amino Acids

36.06

Weight (kDa)

6.25

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YceD PF02620 176 - 318 5.1e-21 Large ribosomal RNA subunit accumulation protein YceD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 757
AclWI GGATC 3 cut(s) 542, 572, 750
AcsI RAATTY 1 cut(s) 877
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 3 cut(s) 88, 359, 364
AfiI CCNNNNNNNGG 3 cut(s) 311, 417, 763
AflIII ACRYGT 1 cut(s) 349
AgsI TTSAA 4 cut(s) 227, 399, 786, 883
AluBI AGCT 4 cut(s) 36, 452, 587, 748
AluI AGCT 4 cut(s) 36, 452, 587, 748
Alw26I GTCTC 4 cut(s) 412, 669, 792, 866
AlwI GGATC 3 cut(s) 542, 572, 750
AlwNI CAGNNNCTG 1 cut(s) 587
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 1 cut(s) 877
Asp700I GAANNNNTTC 2 cut(s) 337, 394
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 935
AsuHPI GGTGA 6 cut(s) 211, 278, 294, 299, 436, 587
AvaII GGWCC 1 cut(s) 935
BbsI GAAGAC 2 cut(s) 249, 929
BbvI GCAGC 1 cut(s) 596
BccI CCATC 4 cut(s) 239, 278, 424, 524
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 4 cut(s) 412, 669, 792, 866
BfaI CTAG 3 cut(s) 66, 417, 888
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
BmcAI AGTACT 2 cut(s) 88, 359
Bme18I GGWCC 1 cut(s) 935
BmgT120I GGNCC 1 cut(s) 935
BmsI GCATC 2 cut(s) 110, 817
BpiI GAAGAC 2 cut(s) 249, 929
BplI GAGNNNNNCTC 2 cut(s) 710, 742
BpmI CTGGAG 1 cut(s) 833
BsaBI GATNNNNATC 1 cut(s) 821
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 3 cut(s) 195, 305, 402
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 417, 763
Bse1I ACTGG 1 cut(s) 479
Bse8I GATNNNNATC 1 cut(s) 821
BseDI CCNNGG 3 cut(s) 195, 305, 402
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 821
BseLI CCNNNNNNNGG 3 cut(s) 311, 417, 763
BseMII CTCAG 3 cut(s) 135, 512, 579
BseNI ACTGG 1 cut(s) 479
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 311, 417, 763
BsmAI GTCTC 4 cut(s) 412, 669, 792, 866
Bso31I GGTCTC 1 cut(s) 412
Bsp143I GATC 4 cut(s) 268, 534, 577, 742
BspACI CCGC 1 cut(s) 757
BspCNI CTCAG 3 cut(s) 136, 513, 580
BspPI GGATC 3 cut(s) 542, 572, 750
BspTNI GGTCTC 1 cut(s) 412
BsrI ACTGG 1 cut(s) 479
BssECI CCNNGG 3 cut(s) 195, 305, 402
BssMI GATC 4 cut(s) 268, 534, 577, 742
BssT1I CCWWGG 1 cut(s) 305
Bst4CI ACNGT 6 cut(s) 160, 199, 250, 362, 406, 547
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 144, 521, 588
BstDSI CCRYGG 2 cut(s) 195, 402
BstEII GGTNACC 1 cut(s) 442
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 20
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 271, 537, 580, 745
BstMAI GTCTC 4 cut(s) 412, 669, 792, 866
BstMBI GATC 4 cut(s) 268, 534, 577, 742
BstNSI RCATGY 2 cut(s) 353, 837
BstPI GGTNACC 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 596
BstV2I GAAGAC 2 cut(s) 249, 929
BstXI CCANNNNNNTGG 1 cut(s) 59
BtgI CCRYGG 2 cut(s) 195, 402
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 5 cut(s) 64, 165, 234, 432, 554
Cac8I GCNNGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 935
Csp6I GTAC 3 cut(s) 87, 358, 363
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 2 cut(s) 350, 834
CviJI RGCY 8 cut(s) 36, 379, 422, 452, 526, 587, 748, 856
CviKI_1 RGCY 8 cut(s) 36, 379, 422, 452, 526, 587, 748, 856
CviQI GTAC 3 cut(s) 87, 358, 363
DdeI CTNAG 3 cut(s) 144, 521, 588
DpnI GATC 4 cut(s) 270, 536, 579, 744
DpnII GATC 4 cut(s) 268, 534, 577, 742
EciI GGCGGA 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 305
Eco31I GGTCTC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 935
Eco57I CTGAAG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 442
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoO65I GGTNACC 1 cut(s) 442
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 305
FaeI CATG 2 cut(s) 353, 837
FatI CATG 2 cut(s) 349, 833
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 1 cut(s) 7
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 3 cut(s) 66, 417, 888
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 585
GsuI CTGGAG 1 cut(s) 833
HhaI GCGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 353, 837
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 4 cut(s) 299, 590, 725, 800
HphI GGTGA 6 cut(s) 211, 278, 294, 299, 436, 587
Hpy166II GTNNAC 2 cut(s) 195, 325
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 1 cut(s) 812
Hpy8I GTNNAC 2 cut(s) 195, 325
HpyAV CCTTC 3 cut(s) 162, 305, 451
HpyCH4III ACNGT 6 cut(s) 160, 199, 250, 362, 406, 547
HpyCH4V TGCA 8 cut(s) 123, 138, 210, 564, 808, 837, 849, 964
HpyF3I CTNAG 3 cut(s) 144, 521, 588
Hsp92II CATG 2 cut(s) 353, 837
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 268, 534, 577, 742
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 65, 492, 553, 594, 657, 774, 797, 896
Lsp1109I GCAGC 1 cut(s) 596
LweI GCATC 2 cut(s) 110, 817
MaeI CTAG 3 cut(s) 66, 417, 888
MaeIII GTNAC 3 cut(s) 13, 435, 442
MalI GATC 4 cut(s) 270, 536, 579, 744
MboI GATC 4 cut(s) 268, 534, 577, 742
MboII GAAGA 5 cut(s) 254, 293, 302, 650, 934
MfeI CAATTG 3 cut(s) 729, 865, 892
MluCI AATT 7 cut(s) 205, 220, 729, 844, 865, 877, 892
MlyI GAGTC 3 cut(s) 599, 719, 794
MmeI TCCRAC 1 cut(s) 627
MroXI GAANNNNTTC 2 cut(s) 337, 394
MseI TTAA 3 cut(s) 48, 188, 540
MslI CAYNNNNRTG 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 587, 748
MunI CAATTG 3 cut(s) 729, 865, 892
NdeII GATC 4 cut(s) 268, 534, 577, 742
NlaIII CATG 2 cut(s) 353, 837
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 2 cut(s) 353, 837
PciI ACATGT 1 cut(s) 349
PdmI GAANNNNTTC 2 cut(s) 337, 394
PfeI GAWTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 3 cut(s) 598, 719, 794
PpsI GAGTC 3 cut(s) 598, 719, 794
PscI ACATGT 1 cut(s) 349
PspEI GGTNACC 1 cut(s) 442
PspPI GGNCC 1 cut(s) 935
PstNI CAGNNNCTG 1 cut(s) 587
PvuII CAGCTG 2 cut(s) 587, 748
RsaI GTAC 3 cut(s) 88, 359, 364
RsaNI GTAC 3 cut(s) 87, 358, 363
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 3 cut(s) 48, 188, 540
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 4 cut(s) 268, 534, 577, 742
Sau96I GGNCC 1 cut(s) 935
ScaI AGTACT 2 cut(s) 88, 359
SchI GAGTC 3 cut(s) 599, 719, 794
SfaNI GCATC 2 cut(s) 110, 817
SinI GGWCC 1 cut(s) 935
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 7 cut(s) 205, 220, 729, 844, 865, 877, 892
SsiI CCGC 1 cut(s) 757
SspMI CTAG 3 cut(s) 66, 417, 888
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 6 cut(s) 160, 199, 250, 362, 406, 547
TaqI TCGA 4 cut(s) 118, 341, 354, 738
TasI AATT 7 cut(s) 205, 220, 729, 844, 865, 877, 892
TatI WGTACW 3 cut(s) 86, 357, 362
TfiI GAWTC 1 cut(s) 299
Tru1I TTAA 3 cut(s) 48, 188, 540
Tru9I TTAA 3 cut(s) 48, 188, 540
TscAI CASTG 5 cut(s) 64, 165, 241, 432, 561
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 5 cut(s) 90, 218, 255, 294, 642
TspRI CASTG 5 cut(s) 64, 165, 241, 432, 561
VpaK11BI GGWCC 1 cut(s) 935
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 877
XceI RCATGY 2 cut(s) 353, 837
XmnI GAANNNNTTC 2 cut(s) 337, 394
XspI CTAG 3 cut(s) 66, 417, 888
ZrmI AGTACT 2 cut(s) 88, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.