Prupe.2G212300_v2.0.a1

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014617
Physical Location & Seq
Reverse (-)
24428623 .. 24431270
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G212300.1

Sequence Viewer

Length: 936 bp
ATGTCATTTGTAGTCACCTCCTCTTATTTTAGCAGCCATAGGGTTTCTAAATTAAGAACTTGCGAAAATACTTTGACAACTCCATGTTTTCCTTTTGTTCGTTGCAAAAGTCCATTTTGCCTTGCTGAAAATATCCATACAACTTTGACTAGAAAACCAAATGGTATTTTAAGGTCTACTGTAACGAATTGCACAAAACCAAATTATCAGTCCTTCACCGGAGAAGACGCAGTTTTTCTTGATTTGGGTGATGAAGACGAAACAGGGTCGCCCTGGGAAGGGGCAGTTATTTACAAGAGAAACACTTCCATATCACATGTTGAGTATTGCACAACGTTAGAGAGGCTTGGATTGGGGAACCTTTCAACAGAGGTCTCGAAATCTAAGGCTTCAGTGATGGGATTACGAGTCACCAAAGCTGTGAAGGATTATCCACAGGGTACACCAGTTCAGATCTCCATTGACATAACAAGGAAGAAGCAAAAGTTGAGGCTTGATGGCATCATTAAAACTGTTATCGCACTGACTTGCAGCAGGTGTGAAGATCCAGCGGCCGAGTGCATCTTCTCCAACTTCTCCCTTCTCCTAACTGATGAACCAATTGAAGAACCTGAGATCATCAATATGGGAGTGATATATGGGGACACTGGGATAAGTGGCCAAGGGGAGGAAGATGATGAAGGCACAATTGATTTTGAGGATCAGCTGTATTTTCGCCCAGGGGACAAAGAAATAGATATTTCAAAGCACATAAGAGACATGGTGCATCTAGAGATTACCATCACCGCAACATGTAATCCAAGTTGCAAGGGTTTGTGTCTCAGTTGTGGTAAAAATTTGAACACTGGCAGTTGTAATTGTAGCAAACAGCAGGCAAAGAAGGGTTTTGGACCGCTTGGAAACTTAAAGAAGCAATTGCAGCAGCAAAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

312

Amino Acids

34.38

Weight (kDa)

6.54

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 525
AccI GTMKAC 1 cut(s) 176
AciI CCGC 3 cut(s) 551, 786, 893
AclI AACGTT 1 cut(s) 335
AclWI GGATC 2 cut(s) 539, 708
AcoI YGGCCR 2 cut(s) 552, 658
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 1 cut(s) 442
AfiI CCNNNNNNNGG 3 cut(s) 278, 279, 667
AflIII ACRYGT 2 cut(s) 316, 791
AgsI TTSAA 4 cut(s) 366, 605, 744, 841
AjnI CCWGG 2 cut(s) 272, 718
AluBI AGCT 2 cut(s) 419, 706
AluI AGCT 2 cut(s) 419, 706
Alw26I GTCTC 3 cut(s) 379, 750, 824
AlwI GGATC 2 cut(s) 539, 708
AoxI GGCC 2 cut(s) 552, 658
ApeKI GCWGC 4 cut(s) 33, 531, 919, 922
ApoI RAATTY 1 cut(s) 835
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
Asp700I GAANNNNTTC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 5 cut(s) 7, 208, 260, 403, 775
AvaII GGWCC 1 cut(s) 890
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BalI TGGCCA 1 cut(s) 660
BbsI GAAGAC 2 cut(s) 231, 261
BbvI GCAGC 3 cut(s) 45, 543, 931
BccI CCATC 3 cut(s) 391, 491, 788
BciT130I CCWGG 2 cut(s) 274, 720
BcoDI GTCTC 3 cut(s) 379, 750, 824
BfaI CTAG 2 cut(s) 150, 770
BfuAI ACCTGC 1 cut(s) 525
BglII AGATCT 1 cut(s) 453
BisI GCNGC 5 cut(s) 34, 532, 552, 920, 923
BlsI GCNGC 5 cut(s) 35, 533, 553, 921, 924
Bme1390I CCNGG 2 cut(s) 274, 720
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 2 cut(s) 274, 720
BmrI ACTGGG 1 cut(s) 657
BmsI GCATC 3 cut(s) 510, 570, 775
BmuI ACTGGG 1 cut(s) 657
BpiI GAAGAC 2 cut(s) 231, 261
BsaBI GATNNNNATC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 5 cut(s) 272, 273, 661, 718, 719
BsaWI WCCGGW 1 cut(s) 218
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 279, 667
Bse1I ACTGG 3 cut(s) 446, 652, 850
Bse8I GATNNNNATC 1 cut(s) 779
BseBI CCWGG 2 cut(s) 274, 720
BseDI CCNNGG 5 cut(s) 272, 273, 661, 718, 719
BseJI GATNNNNATC 1 cut(s) 779
BseLI CCNNNNNNNGG 3 cut(s) 278, 279, 667
BseMII CTCAG 2 cut(s) 603, 835
BseNI ACTGG 3 cut(s) 446, 652, 850
BseRI GAGGAG 1 cut(s) 10
BseX3I CGGCCG 1 cut(s) 552
BseXI GCAGC 3 cut(s) 45, 543, 931
Bsh1285I CGRYCG 1 cut(s) 555
BshFI GGCC 2 cut(s) 554, 660
BsiEI CGRYCG 1 cut(s) 555
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 656, 737
BslI CCNNNNNNNGG 3 cut(s) 278, 279, 667
BsmAI GTCTC 3 cut(s) 379, 750, 824
BsmFI GGGAC 2 cut(s) 656, 737
BsnI GGCC 2 cut(s) 554, 660
Bso31I GGTCTC 1 cut(s) 379
Bsp143I GATC 4 cut(s) 453, 544, 615, 700
BspACI CCGC 3 cut(s) 551, 786, 893
BspANI GGCC 2 cut(s) 554, 660
BspCNI CTCAG 2 cut(s) 604, 834
BspLI GGNNCC 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 525
BspPI GGATC 2 cut(s) 539, 708
BspTNI GGTCTC 1 cut(s) 379
BsrI ACTGG 3 cut(s) 446, 652, 850
BssECI CCNNGG 5 cut(s) 272, 273, 661, 718, 719
BssMI GATC 4 cut(s) 453, 544, 615, 700
BssT1I CCWWGG 1 cut(s) 661
Bst2UI CCWGG 2 cut(s) 274, 720
Bst4CI ACNGT 2 cut(s) 181, 514
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 3 cut(s) 384, 612, 821
BstKTI GATC 4 cut(s) 456, 547, 618, 703
BstMAI GTCTC 3 cut(s) 379, 750, 824
BstMBI GATC 4 cut(s) 453, 544, 615, 700
BstMCI CGRYCG 1 cut(s) 555
BstMWI GCNNNNNNNGC 1 cut(s) 919
BstNI CCWGG 2 cut(s) 274, 720
BstNSI RCATGY 2 cut(s) 320, 795
BstSCI CCNGG 2 cut(s) 272, 718
BstV1I GCAGC 3 cut(s) 45, 543, 931
BstV2I GAAGAC 2 cut(s) 231, 261
BstX2I RGATCY 2 cut(s) 453, 544
BstYI RGATCY 2 cut(s) 453, 544
BstZI CGGCCG 1 cut(s) 552
BsuRI GGCC 2 cut(s) 554, 660
BtsIMutI CAGTG 4 cut(s) 399, 521, 645, 843
BveI ACCTGC 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 873
Cfr13I GGNCC 1 cut(s) 890
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 441
CviAII CATG 4 cut(s) 84, 317, 760, 792
CviJI RGCY 8 cut(s) 36, 346, 389, 419, 493, 554, 660, 706
CviKI_1 RGCY 8 cut(s) 36, 346, 389, 419, 493, 554, 660, 706
CviQI GTAC 1 cut(s) 441
DdeI CTNAG 3 cut(s) 384, 612, 821
DpnI GATC 4 cut(s) 455, 546, 617, 702
DpnII GATC 4 cut(s) 453, 544, 615, 700
EaeI YGGCCR 2 cut(s) 552, 658
EagI CGGCCG 1 cut(s) 552
EclXI CGGCCG 1 cut(s) 552
Eco130I CCWWGG 1 cut(s) 661
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 890
Eco52I CGGCCG 1 cut(s) 552
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 2 cut(s) 272, 718
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 4 cut(s) 87, 320, 763, 795
FaqI GGGAC 2 cut(s) 656, 737
FatI CATG 4 cut(s) 83, 316, 759, 791
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 5 cut(s) 34, 532, 552, 920, 923
Fsp4HI GCNGC 5 cut(s) 34, 532, 552, 920, 923
FspBI CTAG 2 cut(s) 150, 770
GluI GCNGC 5 cut(s) 34, 532, 552, 920, 923
HaeIII GGCC 2 cut(s) 554, 660
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 87, 320, 763, 795
HinfI GANTC 1 cut(s) 408
HpaII CCGG 1 cut(s) 219
HphI GGTGA 5 cut(s) 7, 208, 260, 403, 775
Hpy166II GTNNAC 2 cut(s) 177, 443
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 3 cut(s) 239, 376, 770
Hpy8I GTNNAC 2 cut(s) 177, 443
HpyAV CCTTC 6 cut(s) 223, 272, 418, 590, 674, 874
HpyCH4III ACNGT 2 cut(s) 181, 514
HpyCH4IV ACGT 1 cut(s) 335
HpyCH4V TGCA 8 cut(s) 105, 192, 330, 531, 561, 766, 807, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 919
HpyF3I CTNAG 3 cut(s) 384, 612, 821
HpySE526I ACGT 1 cut(s) 335
Hsp92II CATG 4 cut(s) 87, 320, 763, 795
Kzo9I GATC 4 cut(s) 453, 544, 615, 700
Lsp1109I GCAGC 3 cut(s) 45, 543, 931
LweI GCATC 3 cut(s) 510, 570, 775
MaeI CTAG 2 cut(s) 150, 770
MaeII ACGT 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 13, 181, 409
MalI GATC 4 cut(s) 455, 546, 617, 702
MboI GATC 4 cut(s) 453, 544, 615, 700
MboII GAAGA 7 cut(s) 236, 266, 487, 554, 556, 617, 683
MfeI CAATTG 3 cut(s) 600, 687, 914
MflI RGATCY 2 cut(s) 453, 544
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 8 cut(s) 50, 187, 202, 600, 687, 835, 856, 914
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 1 cut(s) 417
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 7 cut(s) 28, 31, 336, 364, 483, 661, 691
Mox20I TGGCCA 1 cut(s) 660
MroXI GAANNNNTTC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 660
MseI TTAA 4 cut(s) 53, 170, 507, 905
MslI CAYNNNNRTG 1 cut(s) 623
Msp20I TGGCCA 1 cut(s) 660
MspA1I CMGCKG 2 cut(s) 551, 706
MspI CCGG 1 cut(s) 219
MspR9I CCNGG 2 cut(s) 274, 720
MunI CAATTG 3 cut(s) 600, 687, 914
MvaI CCWGG 2 cut(s) 274, 720
MwoI GCNNNNNNNGC 1 cut(s) 919
NdeII GATC 4 cut(s) 453, 544, 615, 700
NlaIII CATG 4 cut(s) 87, 320, 763, 795
NlaIV GGNNCC 1 cut(s) 359
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 2 cut(s) 13, 409
NspI RCATGY 2 cut(s) 320, 795
PaqCI CACCTGC 1 cut(s) 525
PasI CCCWGGG 2 cut(s) 273, 719
PciI ACATGT 2 cut(s) 316, 791
PdmI GAANNNNTTC 1 cut(s) 304
PkrI GCNGC 5 cut(s) 35, 533, 553, 921, 924
PleI GAGTC 1 cut(s) 416
PpsI GAGTC 1 cut(s) 416
PscI ACATGT 2 cut(s) 316, 791
Psp1406I AACGTT 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 272, 718
PspGI CCWGG 2 cut(s) 272, 718
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 890
PsuI RGATCY 2 cut(s) 453, 544
PvuII CAGCTG 1 cut(s) 706
RsaI GTAC 1 cut(s) 442
RsaNI GTAC 1 cut(s) 441
RseI CAYNNNNRTG 1 cut(s) 623
SaqAI TTAA 4 cut(s) 53, 170, 507, 905
SatI GCNGC 5 cut(s) 34, 532, 552, 920, 923
Sau3AI GATC 4 cut(s) 453, 544, 615, 700
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 1 cut(s) 417
ScrFI CCNGG 2 cut(s) 274, 720
SetI ASST 9 cut(s) 20, 176, 338, 363, 375, 421, 539, 613, 708
SfaNI GCATC 3 cut(s) 510, 570, 775
SinI GGWCC 1 cut(s) 890
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 8 cut(s) 50, 187, 202, 600, 687, 835, 856, 914
SsiI CCGC 3 cut(s) 551, 786, 893
SspMI CTAG 2 cut(s) 150, 770
StyD4I CCNGG 2 cut(s) 272, 718
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 2 cut(s) 181, 514
TaiI ACGT 1 cut(s) 338
TaqI TCGA 1 cut(s) 377
TasI AATT 8 cut(s) 50, 187, 202, 600, 687, 835, 856, 914
TauI GCSGC 1 cut(s) 554
Tru1I TTAA 4 cut(s) 53, 170, 507, 905
Tru9I TTAA 4 cut(s) 53, 170, 507, 905
TscAI CASTG 4 cut(s) 399, 528, 652, 850
TseFI GTSAC 2 cut(s) 13, 409
TseI GCWGC 4 cut(s) 33, 531, 919, 922
Tsp45I GTSAC 2 cut(s) 13, 409
TspDTI ATGAA 3 cut(s) 267, 609, 693
TspRI CASTG 4 cut(s) 399, 528, 652, 850
VpaK11BI GGWCC 1 cut(s) 890
XapI RAATTY 1 cut(s) 835
XbaI TCTAGA 1 cut(s) 769
XceI RCATGY 2 cut(s) 320, 795
XmiI GTMKAC 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 304
XspI CTAG 2 cut(s) 150, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.