Rorug01G0304400

Uncharacterized ACR, COG1399

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014617
Physical Location & Seq
Forward (+)
41966535 .. 41967404
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0304400.1

Sequence Viewer

Length: 438 bp
ATGAAGAACCTCGAGCTTCCGATCATCGAGCCCGGCGGCCAGGAGCTCAAAATCGAAGCCGAGTCGCTCTGCTCAAGCCGTACTCCAATATTTCGTAATCTCAATGTCCGGAAGGCATCTGAATTGGAGAATGAGATTTTGTTGTCGCCGACTTGGGGCAAATTGGAGTCGCTCGGAGATCTGATAGGCCTGTGCTCGTTGATCACCTCCTCCGATTGTATTCCCATCACCGTCATCGACACCTCATCCAGTATTAAGCGCAGTGAAGAACTCAAGCGAGTTGATGCAGTGATGCTAATGTACTCCTATGATCAGCCAATGACGCTTACTCGTATCTCTAGCTTCTGGCTCCCTAAGCTTCGTCGATTGGAGGTTCCTGATGCATTCTATTATGCTCAAAAGGCAATTCTTCATCCAACATTGCCTTTGTTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF177

Protein Analysis

145

Amino Acids

16.41

Weight (kDa)

5.26

Isoelectric Point (pI)

62.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014617)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19810 AT3G19810
fragaria_vesca FvH4_7g19250
malus_domestica MD01G1107600.v1.1
prunus_persica Prupe.2G212300_v2.0.a1
pyrus_communis pycom01g13450
rosa_chinensis RchiOBHm_Chr1g0363071
rosa_laevigata RLG00000027596
rosa_multiflora Rmu_sc0014047.1_g000001
rosa_roxburghii Rroxscaffold_4G00293490
rosa_rugosa Rorug01G0304300 Rorug01G0304400
rosa_samantha Rh1AG313400 Rh1BG276500 Rh1CG293300 Rh1DG307200
rosa_wichuraiana Rw1G027760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 37
AfaI GTAC 2 cut(s) 82, 302
AfiI CCNNNNNNNGG 1 cut(s) 155
AjnI CCWGG 1 cut(s) 39
AluBI AGCT 4 cut(s) 16, 46, 342, 358
AluI AGCT 4 cut(s) 16, 46, 342, 358
Alw21I GWGCWC 2 cut(s) 48, 197
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 2 cut(s) 37, 187
AspLEI GCGC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 196, 220
AvaI CYCGRG 1 cut(s) 11
BanII GRGCYC 2 cut(s) 33, 48
Bbv12I GWGCWC 2 cut(s) 48, 197
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 41
BclI TGATCA 2 cut(s) 201, 310
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 1 cut(s) 339
BglII AGATCT 1 cut(s) 178
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 2 cut(s) 33, 41
BmeT110I CYCGRG 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 350, 375
BmrFI CCNGG 2 cut(s) 33, 41
BmsI GCATC 4 cut(s) 125, 274, 282, 370
Bpu10I CCTNAGC 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 58, 257
BpuMI CCSGG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 419
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 1 cut(s) 41
BseGI GGATG 2 cut(s) 245, 412
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 249
BseRI GAGGAG 1 cut(s) 199
BshFI GGCC 2 cut(s) 39, 189
BsiHKAI GWGCWC 2 cut(s) 48, 197
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 33, 109
BslI CCNNNNNNNGG 1 cut(s) 155
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 2 cut(s) 39, 189
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 3 cut(s) 33, 48, 197
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 4 cut(s) 21, 178, 201, 310
BspACI CCGC 1 cut(s) 36
BspANI GGCC 2 cut(s) 39, 189
BspEI TCCGGA 1 cut(s) 108
BspLI GGNNCC 2 cut(s) 350, 375
BsrDI GCAATG 1 cut(s) 419
BsrI ACTGG 1 cut(s) 249
BssMI GATC 4 cut(s) 21, 178, 201, 310
Bst2UI CCWGG 1 cut(s) 41
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 245, 412
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 4 cut(s) 24, 181, 204, 313
BstMBI GATC 4 cut(s) 21, 178, 201, 310
BstMWI GCNNNNNNNGC 3 cut(s) 322, 355, 401
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 2 cut(s) 31, 39
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 2 cut(s) 39, 189
BtsCI GGATG 2 cut(s) 245, 412
BtsI GCAGTG 2 cut(s) 268, 294
BtsIMutI CAGTG 2 cut(s) 268, 294
CfoI GCGC 1 cut(s) 261
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 81, 301
CviQI GTAC 2 cut(s) 81, 301
DdeI CTNAG 1 cut(s) 354
DpnI GATC 4 cut(s) 23, 180, 203, 312
DpnII GATC 4 cut(s) 21, 178, 201, 310
EaeI YGGCCR 1 cut(s) 37
Ecl136II GAGCTC 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 33, 48
Eco53kI GAGCTC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 11
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 2 cut(s) 33, 48
FaiI YATR 2 cut(s) 309, 393
FbaI TGATCA 2 cut(s) 201, 310
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 2 cut(s) 232, 399
FriOI GRGCYC 2 cut(s) 33, 48
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 1 cut(s) 339
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 37
HaeIII GGCC 2 cut(s) 39, 189
HapII CCGG 2 cut(s) 33, 109
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 261
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 62, 167
HpaII CCGG 2 cut(s) 33, 109
HphI GGTGA 2 cut(s) 196, 220
Hpy188I TCNGA 5 cut(s) 21, 121, 176, 183, 214
Hpy188III TCNNGA 2 cut(s) 109, 377
Hpy99I CGWCG 1 cut(s) 366
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 287, 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 355, 401
HpyF3I CTNAG 1 cut(s) 354
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 108
Ksp22I TGATCA 2 cut(s) 201, 310
Kzo9I GATC 4 cut(s) 21, 178, 201, 310
LmnI GCTCC 2 cut(s) 43, 354
LpnPI CCDG 8 cut(s) 26, 46, 53, 122, 203, 262, 331, 390
LweI GCATC 4 cut(s) 125, 274, 282, 370
MaeI CTAG 1 cut(s) 339
MalI GATC 4 cut(s) 23, 180, 203, 312
MboI GATC 4 cut(s) 21, 178, 201, 310
MboII GAAGA 3 cut(s) 16, 278, 401
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 3 cut(s) 33, 48, 197
MluCI AATT 3 cut(s) 122, 161, 405
MlyI GAGTC 2 cut(s) 71, 176
MnlI CCTC 5 cut(s) 20, 217, 220, 253, 364
Mph1103I ATGCAT 1 cut(s) 385
MroI TCCGGA 1 cut(s) 108
MseI TTAA 2 cut(s) 255, 436
MspI CCGG 2 cut(s) 33, 109
MspR9I CCNGG 2 cut(s) 33, 41
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 3 cut(s) 322, 355, 401
NciI CCSGG 1 cut(s) 33
NdeII GATC 4 cut(s) 21, 178, 201, 310
NlaIV GGNNCC 2 cut(s) 350, 375
NmeAIII GCCGAG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 385
PaeR7I CTCGAG 1 cut(s) 11
PceI AGGCCT 1 cut(s) 189
PctI GAATGC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 2 cut(s) 70, 175
PpsI GAGTC 2 cut(s) 70, 175
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 350, 375
PspXI VCTCGAGB 1 cut(s) 11
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 2 cut(s) 82, 302
RsaNI GTAC 2 cut(s) 81, 301
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 255, 436
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 4 cut(s) 21, 178, 201, 310
SchI GAGTC 2 cut(s) 71, 176
ScrFI CCNGG 2 cut(s) 33, 41
SduI GDGCHC 3 cut(s) 33, 48, 197
SetI ASST 8 cut(s) 12, 18, 48, 209, 245, 344, 360, 375
SfaNI GCATC 4 cut(s) 125, 274, 282, 370
Sfr274I CTCGAG 1 cut(s) 11
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 3 cut(s) 11, 73, 272
SmoI CTYRAG 3 cut(s) 11, 73, 272
Sse9I AATT 3 cut(s) 122, 161, 405
SseBI AGGCCT 1 cut(s) 189
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 339
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 31, 39
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 5 cut(s) 12, 27, 54, 237, 364
TasI AATT 3 cut(s) 122, 161, 405
TatI WGTACW 1 cut(s) 300
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 2 cut(s) 255, 436
Tru9I TTAA 2 cut(s) 255, 436
TscAI CASTG 2 cut(s) 268, 294
TspDTI ATGAA 2 cut(s) 17, 401
TspRI CASTG 2 cut(s) 268, 294
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 339
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.