AT3G20560

Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7182013 .. 7186567
4555 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20560.1

Sequence Viewer

Length: 1452 bp
ATGGTTTCCTCCACCAAACTCAAATCCGTTGATTTCTACAGGAAAATTCCGAGAGATTTGACGGAGGCATCTCTATCAGGCGCTGGGTTATCAATTGTAGCTGCTCTCTTTATGATGTTTTTGTTTGGAATGGAGCTGAGTAGTTATTTGGAAGTTAACACTACCACAGCTGTTATAGTTGACAAGAGCAGTGATGGTGACTTCTTACGCATTGATTTCAACATCAGTTTTCCTGCTCTTTCCTGTGAATTTGCATCCGTTGATGTGAGCGATGTCTTGGGAACGAATAGGTTGAATATAACAAAAACAGTTCGCAAGTTTCCAATTGATCCACATTTAAGGTCCACCGGCGCAGAATTCCACTCTGGCCTTGCATTACATAACATAAACCATGGAGAAGAAACTAAGGAAGAGTTTCCTGATGGTGCTATACCATTGACCAGTGCTAGTTTTGAAGCATTATCACATCACTTTCCAATATTGGTTGTTAACTTTAATGCACCATGGTGCTACTGGAGTAATCGTCTGAAACCTTCATGGGAGAAAGCAGCTAATATAATAAAACAAAGATATGATCCTGAAGCTGATGGCCGTGTTCTTCTAGGAAATGTTGATTGCACGGAAGAACCTGCGCTATGTAAGAGGAATCACATACAAGGCTATCCATCTATTCGTATTTTCCGCAAAGGCAGTGACCTTAGAGAGGACCATGGACACCACGAACATGAATCTTACTATGGAGATCGGGACACAGACAGTATAGTTAAGATGGTGGAGGGACTGGTCGCACCTATCCACCCGGAGACTCACAAGGTGGCTTTGGATGGAAAATCCAATGATACTGTAAAACATCTTAAAAAGGGACCAGTTACAGGAGGTTGTAGAGTTGAAGGTTATGTACGTGTAAAGAAGGTTCCAGGAAATCTCGTGATCTCAGCTCATTCAGGAGCTCATTCATTTGATTCTTCTCAAATGAACATGTCGCATGTTGTTTCTCATTTTTCGTTTGGGAGGATGATTTCTCCTAGGCTGCTGACCGATATGAAGCGATTGTTGCCATATCTTGGCCTAAGCCATGACAGGCTGGATGGAAAGGCATTCATAAATCAACATGAGTTTGGTGCCAATGTCACTATCGAACACTACCTTCAAACAGTCAAAACAGAGGTCATTACAAGAAGATCCGGTCAAGAACATTCACTGATAGAGGAATATGAATACACCGCTCACAGCAGCGTGGCTCAGACTTACTACTTACCCGTTGCGAAGTTTCACTTTGAGCTCTCTCCTATGCAGATCTTAATAACCGAAAACCCGAAGTCCTTCTCACACTTCATCACAAATCTGTGTGCCATTATTGGTGGTGTTTTCACGGTTGCCGGAATACTAGATTCGATTTTTCACAATACAGTAAGACTGGTAAAAAAGGTCGAACTTGGGAAAAACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

53.99

Weight (kDa)

6.7

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ERGIC_N PF13850 7 - 97 8.9e-24 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Thioredoxin PF00085 146 - 242 8.7e-14 Thioredoxin
COPIIcoated_ERV PF07970 287 - 464 2.1e-26 Endoplasmic reticulum vesicle transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009964)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 1121
AccB7I CCANNNNNTGG 1 cut(s) 1064
AccBSI CCGCTC 1 cut(s) 1226
AciI CCGC 2 cut(s) 682, 1224
AclWI GGATC 3 cut(s) 323, 569, 1176
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 3 cut(s) 45, 248, 356
AcuI CTGAAG 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 814
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 3 cut(s) 703, 872, 1064
AflIII ACRYGT 2 cut(s) 901, 978
AgsI TTSAA 5 cut(s) 220, 295, 455, 890, 1151
AjnI CCWGG 1 cut(s) 916
AleI CACNNNNGTG 1 cut(s) 505
AluBI AGCT 8 cut(s) 101, 136, 170, 551, 584, 938, 950, 1282
AluI AGCT 8 cut(s) 101, 136, 170, 551, 584, 938, 950, 1282
Alw21I GWGCWC 2 cut(s) 952, 1284
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 3 cut(s) 323, 569, 1176
AlwNI CAGNNNCTG 1 cut(s) 83
AoxI GGCC 3 cut(s) 367, 589, 1066
ApeKI GCWGC 4 cut(s) 101, 548, 1030, 1233
ApoI RAATTY 3 cut(s) 45, 248, 356
ArsI GACNNNNNNTTYG 2 cut(s) 1152, 1184
Asp700I GAANNNNTTC 2 cut(s) 414, 1322
AspA2I CCTAGG 1 cut(s) 1025
AspLEI GCGC 3 cut(s) 83, 353, 634
AspS9I GGNCC 3 cut(s) 342, 706, 863
AsuC2I CCSGG 1 cut(s) 800
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 3 cut(s) 342, 706, 863
AvrII CCTAGG 1 cut(s) 1025
BanI GGYRCC 1 cut(s) 1121
BanII GRGCYC 2 cut(s) 952, 1284
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
BauI CACGAG 1 cut(s) 926
Bbv12I GWGCWC 2 cut(s) 952, 1284
BbvI GCAGC 4 cut(s) 88, 560, 1017, 1245
BccI CCATC 7 cut(s) 188, 416, 581, 673, 763, 818, 1082
BceAI ACGGC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 918
BcnI CCSGG 1 cut(s) 800
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 4 cut(s) 447, 602, 1026, 1388
BfmI CTRYAG 1 cut(s) 37
BfoI RGCGCY 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 637
BglII AGATCT 1 cut(s) 1296
BisI GCNGC 4 cut(s) 102, 549, 1031, 1234
BlnI CCTAGG 1 cut(s) 1025
BlsI GCNGC 4 cut(s) 103, 550, 1032, 1235
Bme1390I CCNGG 2 cut(s) 800, 918
Bme18I GGWCC 3 cut(s) 342, 706, 863
BmgT120I GGNCC 3 cut(s) 342, 706, 863
BmiI GGNNCC 3 cut(s) 864, 915, 1123
BmrFI CCNGG 2 cut(s) 800, 918
BmsI GCATC 2 cut(s) 77, 263
BpmI CTGGAG 1 cut(s) 535
Bpu10I CCTNAGC 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 800
BsaAI YACGTR 1 cut(s) 902
BsaJI CCNNGG 4 cut(s) 391, 503, 709, 1025
BsaWI WCCGGW 1 cut(s) 1184
BsaXI ACNNNNNCTCC 2 cut(s) 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 703, 872, 1064
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 5 cut(s) 441, 518, 786, 866, 1422
BseBI CCWGG 1 cut(s) 918
BseDI CCNNGG 4 cut(s) 391, 503, 709, 1025
BseGI GGATG 4 cut(s) 254, 829, 1020, 1093
BseLI CCNNNNNNNGG 3 cut(s) 703, 872, 1064
BseMII CTCAG 3 cut(s) 128, 948, 1256
BseNI ACTGG 5 cut(s) 441, 518, 786, 866, 1422
BseXI GCAGC 4 cut(s) 88, 560, 1017, 1245
BseYI CCCAGC 1 cut(s) 83
BshFI GGCC 3 cut(s) 369, 591, 1068
BshNI GGYRCC 1 cut(s) 1121
BsiHKAI GWGCWC 2 cut(s) 952, 1284
BsiSI CCGG 4 cut(s) 348, 800, 1185, 1380
BslFI GGGAC 3 cut(s) 761, 792, 876
BslI CCNNNNNNNGG 3 cut(s) 703, 872, 1064
BsmAI GTCTC 1 cut(s) 797
BsmFI GGGAC 3 cut(s) 761, 792, 876
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 3 cut(s) 369, 591, 1068
Bsp1286I GDGCHC 2 cut(s) 952, 1284
Bsp143I GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
Bsp19I CCATGG 3 cut(s) 391, 503, 709
BspACI CCGC 2 cut(s) 682, 1224
BspANI GGCC 3 cut(s) 369, 591, 1068
BspCNI CTCAG 3 cut(s) 129, 947, 1255
BspLI GGNNCC 3 cut(s) 864, 915, 1123
BspMI ACCTGC 1 cut(s) 637
BspPI GGATC 3 cut(s) 323, 569, 1176
BspT107I GGYRCC 1 cut(s) 1121
BsrBI CCGCTC 1 cut(s) 1226
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 5 cut(s) 441, 518, 786, 866, 1422
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 391, 503, 709, 1025
BssMI GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
BssSI CACGAG 1 cut(s) 926
BssT1I CCWWGG 4 cut(s) 391, 503, 709, 1025
Bst2BI CACGAG 1 cut(s) 926
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 6 cut(s) 310, 758, 844, 1156, 1375, 1411
Bst6I CTCTTC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 902
BstDEI CTNAG 6 cut(s) 137, 405, 698, 934, 1070, 1242
BstDSI CCRYGG 3 cut(s) 391, 503, 709
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 4 cut(s) 254, 829, 1020, 1093
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 3 cut(s) 83, 353, 634
BstKTI GATC 6 cut(s) 331, 577, 745, 933, 1184, 1299
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
BstMWI GCNNNNNNNGC 1 cut(s) 1054
BstNI CCWGG 1 cut(s) 918
BstNSI RCATGY 2 cut(s) 982, 989
BstSCI CCNGG 2 cut(s) 798, 916
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 4 cut(s) 88, 560, 1017, 1245
BstX2I RGATCY 2 cut(s) 1181, 1296
BstYI RGATCY 2 cut(s) 1181, 1296
BsuRI GGCC 3 cut(s) 369, 591, 1068
BtgI CCRYGG 3 cut(s) 391, 503, 709
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 254, 829, 1020, 1093
BtsI GCAGTG 2 cut(s) 196, 697
BtsIMutI CAGTG 4 cut(s) 196, 448, 697, 1199
BveI ACCTGC 1 cut(s) 637
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 3 cut(s) 83, 353, 634
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 3 cut(s) 342, 706, 863
Csp6I GTAC 1 cut(s) 899
CviAII CATG 9 cut(s) 392, 504, 537, 710, 725, 979, 986, 1076, 1112
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 6 cut(s) 137, 405, 698, 934, 1070, 1242
DpnI GATC 6 cut(s) 330, 576, 744, 932, 1183, 1298
DpnII GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
DraIII CACNNNGTG 1 cut(s) 814
EaeI YGGCCR 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 2 cut(s) 950, 1282
Eco130I CCWWGG 4 cut(s) 391, 503, 709, 1025
Eco24I GRGCYC 2 cut(s) 952, 1284
Eco47I GGWCC 3 cut(s) 342, 706, 863
Eco53kI GAGCTC 2 cut(s) 950, 1282
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 2 cut(s) 950, 1282
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 916
EcoT14I CCWWGG 4 cut(s) 391, 503, 709, 1025
EcoT38I GRGCYC 2 cut(s) 952, 1284
ErhI CCWWGG 4 cut(s) 391, 503, 709, 1025
FaeI CATG 9 cut(s) 395, 507, 540, 713, 728, 982, 989, 1079, 1115
FalI AAGNNNNNCTT 2 cut(s) 1259, 1291
FaqI GGGAC 3 cut(s) 761, 792, 876
FatI CATG 9 cut(s) 391, 503, 536, 709, 724, 978, 985, 1075, 1111
Fnu4HI GCNGC 4 cut(s) 102, 549, 1031, 1234
FokI GGATG 4 cut(s) 241, 836, 1027, 1100
FriOI GRGCYC 2 cut(s) 952, 1284
Fsp4HI GCNGC 4 cut(s) 102, 549, 1031, 1234
FspBI CTAG 4 cut(s) 447, 602, 1026, 1388
GlaI GCGC 3 cut(s) 82, 352, 633
GluI GCNGC 4 cut(s) 102, 549, 1031, 1234
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 535
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 3 cut(s) 369, 591, 1068
HapII CCGG 4 cut(s) 348, 800, 1185, 1380
HhaI GCGC 3 cut(s) 83, 353, 634
Hin1II CATG 9 cut(s) 395, 507, 540, 713, 728, 982, 989, 1079, 1115
Hin6I GCGC 3 cut(s) 81, 351, 632
HinP1I GCGC 3 cut(s) 81, 351, 632
HincII GTYRAC 3 cut(s) 157, 181, 490
HindII GTYRAC 3 cut(s) 157, 181, 490
HinfI GANTC 5 cut(s) 646, 728, 805, 962, 1391
HpaI GTTAAC 2 cut(s) 157, 490
HpaII CCGG 4 cut(s) 348, 800, 1185, 1380
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 4 cut(s) 157, 181, 345, 490
Hpy188I TCNGA 3 cut(s) 51, 528, 1245
Hpy188III TCNNGA 6 cut(s) 419, 578, 746, 928, 945, 1190
Hpy8I GTNNAC 4 cut(s) 157, 181, 345, 490
HpyAV CCTTC 5 cut(s) 543, 884, 904, 1157, 1333
HpyCH4III ACNGT 6 cut(s) 310, 758, 844, 1156, 1375, 1411
HpyCH4IV ACGT 1 cut(s) 901
HpyCH4V TGCA 5 cut(s) 254, 374, 500, 618, 1294
HpyF10VI GCNNNNNNNGC 1 cut(s) 1054
HpyF3I CTNAG 6 cut(s) 137, 405, 698, 934, 1070, 1242
HpySE526I ACGT 1 cut(s) 901
Hsp92II CATG 9 cut(s) 395, 507, 540, 713, 728, 982, 989, 1079, 1115
HspAI GCGC 3 cut(s) 81, 351, 632
KspAI GTTAAC 2 cut(s) 157, 490
Kzo9I GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
LmnI GCTCC 2 cut(s) 133, 947
Lsp1109I GCAGC 4 cut(s) 88, 560, 1017, 1245
LweI GCATC 2 cut(s) 77, 263
MaeI CTAG 4 cut(s) 447, 602, 1026, 1388
MaeII ACGT 1 cut(s) 901
MaeIII GTNAC 4 cut(s) 197, 692, 868, 1129
MalI GATC 6 cut(s) 330, 576, 744, 932, 1183, 1298
MbiI CCGCTC 1 cut(s) 1226
MboI GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
MboII GAAGA 6 cut(s) 410, 422, 590, 635, 957, 1191
MfeI CAATTG 2 cut(s) 93, 324
MflI RGATCY 2 cut(s) 1181, 1296
MhlI GDGCHC 2 cut(s) 952, 1284
MluCI AATT 5 cut(s) 45, 93, 248, 324, 356
MlyI GAGTC 1 cut(s) 799
MnlI CCTC 9 cut(s) 19, 58, 636, 697, 769, 869, 1005, 1159, 1201
MroXI GAANNNNTTC 2 cut(s) 414, 1322
MseI TTAA 7 cut(s) 156, 338, 489, 495, 765, 855, 1301
MslI CAYNNNNRTG 2 cut(s) 505, 723
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 4 cut(s) 348, 800, 1185, 1380
MspR9I CCNGG 2 cut(s) 800, 918
MunI CAATTG 2 cut(s) 93, 324
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 1 cut(s) 918
MwoI GCNNNNNNNGC 1 cut(s) 1054
NciI CCSGG 1 cut(s) 800
NcoI CCATGG 3 cut(s) 391, 503, 709
NdeII GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
NlaIII CATG 9 cut(s) 395, 507, 540, 713, 728, 982, 989, 1079, 1115
NlaIV GGNNCC 3 cut(s) 864, 915, 1123
NmuCI GTSAC 3 cut(s) 197, 692, 1129
NspI RCATGY 2 cut(s) 982, 989
OliI CACNNNNGTG 1 cut(s) 505
PciI ACATGT 1 cut(s) 978
PctI GAATGC 1 cut(s) 1097
PdmI GAANNNNTTC 2 cut(s) 414, 1322
PfeI GAWTC 4 cut(s) 646, 728, 962, 1391
PflMI CCANNNNNTGG 1 cut(s) 1064
PfoI TCCNGGA 1 cut(s) 916
PkrI GCNGC 4 cut(s) 103, 550, 1032, 1235
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Ppu21I YACGTR 1 cut(s) 902
PscI ACATGT 1 cut(s) 978
Psp124BI GAGCTC 2 cut(s) 952, 1284
Psp6I CCWGG 1 cut(s) 916
PspFI CCCAGC 1 cut(s) 83
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 3 cut(s) 864, 915, 1123
PspPI GGNCC 3 cut(s) 342, 706, 863
PsrI GAACNNNNNNTAC 2 cut(s) 897, 929
PstNI CAGNNNCTG 1 cut(s) 83
PsuI RGATCY 2 cut(s) 1181, 1296
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
RseI CAYNNNNRTG 2 cut(s) 505, 723
SacI GAGCTC 2 cut(s) 952, 1284
SaqAI TTAA 7 cut(s) 156, 338, 489, 495, 765, 855, 1301
SatI GCNGC 4 cut(s) 102, 549, 1031, 1234
Sau3AI GATC 6 cut(s) 328, 574, 742, 930, 1181, 1296
Sau96I GGNCC 3 cut(s) 342, 706, 863
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 2 cut(s) 800, 918
SduI GDGCHC 2 cut(s) 952, 1284
SfaNI GCATC 2 cut(s) 77, 263
SfcI CTRYAG 1 cut(s) 37
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 3 cut(s) 342, 706, 863
SmiMI CAYNNNNRTG 2 cut(s) 505, 723
Sse9I AATT 5 cut(s) 45, 93, 248, 324, 356
SsiI CCGC 2 cut(s) 682, 1224
SspI AATATT 1 cut(s) 480
SspMI CTAG 4 cut(s) 447, 602, 1026, 1388
SstI GAGCTC 2 cut(s) 952, 1284
StyD4I CCNGG 2 cut(s) 798, 916
StyI CCWWGG 4 cut(s) 391, 503, 709, 1025
TaaI ACNGT 6 cut(s) 310, 758, 844, 1156, 1375, 1411
TaiI ACGT 1 cut(s) 904
TaqI TCGA 3 cut(s) 1137, 1394, 1431
TaqII GACCGA 1 cut(s) 1052
TasI AATT 5 cut(s) 45, 93, 248, 324, 356
TfiI GAWTC 4 cut(s) 646, 728, 962, 1391
Tru1I TTAA 7 cut(s) 156, 338, 489, 495, 765, 855, 1301
Tru9I TTAA 7 cut(s) 156, 338, 489, 495, 765, 855, 1301
TscAI CASTG 4 cut(s) 196, 448, 697, 1206
TseFI GTSAC 3 cut(s) 197, 692, 1129
TseI GCWGC 4 cut(s) 101, 548, 1030, 1233
Tsp45I GTSAC 3 cut(s) 197, 692, 1129
TspDTI ATGAA 8 cut(s) 525, 741, 945, 989, 1058, 1090, 1230, 1324
TspGWI ACGGA 4 cut(s) 16, 77, 247, 635
TspRI CASTG 4 cut(s) 196, 448, 697, 1206
Van91I CCANNNNNTGG 1 cut(s) 1064
VpaK11BI GGWCC 3 cut(s) 342, 706, 863
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 3 cut(s) 45, 248, 356
XceI RCATGY 2 cut(s) 982, 989
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmaJI CCTAGG 1 cut(s) 1025
XmnI GAANNNNTTC 2 cut(s) 414, 1322
XspI CTAG 4 cut(s) 447, 602, 1026, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.