Prupe.4G205600_v2.0.a1

disulfide-isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0009964
Physical Location & Seq
Reverse (-)
12817620 .. 12825973
8354 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G205600.1

Sequence Viewer

Length: 1443 bp
ATGATTTCCACGGGCAAGATCAAGTCCGTCGATTTTTACAGGAAAATTCCAAGAGATTTGACTGAAGCATCATTATCGGGTGCAGGATTATCTATAATAGCAGCTCTTGCCATGATGTTTTTATTTGGAATGGAACTGAATAGTTATTTGGCCTTCAGCACCTCTACATCTGTTATTGTTGACAAGAGTTCTGATGGGGACTTCTTACGTATTGAATTTAATATAAGTTTTCCTGCACTCTCATGTGAATTTGCATCCATTGACGTGAGTGATGTGTTGGGAACAAACAGATTGAATATAACGAAAACAATTCGCAAGTTCTCTATAGGTCCAGATTTAAAACCCACTGGCTCTGAGTTCCACTCAGGACCCGCTTTCCATGACATTAAGCATGGGGATGGTGATGAATATGGTGGTGATGGCTCTGTTTCAATAACCGCTCGAACTTTTGAAAAGTTTACTCACCAGCATCCAATTTTGGTTGTTAATTTTTATGCTCCTTGGTGCTACTGGAGCAATCGTCTGAAACCTTCATGGGAGAAGGCCGCCAAAATAATAAGAGAAAGATATGATCCAGAAATAGATGGGCGTATTCTTTTGGCGAAAGTAGATTGTACTGAAGAAGGTGACTTGTGTAAGAGGAATCACATTCAAGGATATCCATCAATTCGTATCTTTCGTAAAGGAAGTGATGTGAGGGATGACCATGGACACCATGATCATGAATCTTATTATGGAGATCGAGATACAGATAGTCTGGTTAAGACAATGGAGACTTTGGTAGCACCTATCCCTGTTGAGGCCCAAAAACTTGCTTTGGAGGGTAAATCTGACAATGGGACTGACAATGCAAAAAGACCAGCACCACTGACAGGAGGGTGTAGAATTGAAGGCTATGTGCGTGTGAAGAAGGTTCCAGGAAACCTTGTAATTTCCGCGCATTCAGGAGCCCATTCCTTCGATGCTTCTCAAATGAACATGTCACACGTCATATCACATTTTTCATTTGGTAGGATGATTGCTCCTAAGGTGATGAGTGATGTCAAGCGATTGGTACCTTATCTTGGTGGAAGCCATGACAGGTTGAATGGTCGGTCTTTCATAAATCATCGTGATCTAGGTGCTAATGTTACAATAGAGCATTACCTTCAAATAGTGAAAAGTGAAGTTATAACAGGAAGAAATCATAAATTAATTGAGGAGTATGAGTACACAGCCCACAGCAGCTTGGTGCAAAGTCTTCAAATACCAGTTGCAAAATTCCATTTCGAGCTCTCTCCCATGCAGGTGTTAATAACAGAAAATCAGAAATCCTTTTCACATTTTATCACAAACGTGTGCGCAATAATTGGAGGTGTTTTCACGGTAGCAGGAATAGTGGATTCAATTCTGCACAACACCATTAGAATGATGAGAAAGGTTGAACTAGGCAAAAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003756 GO:0003824 GO:0016853 GO:0016860 GO:0016864 GO:0140096
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N Thioredoxin

Protein Analysis

481

Amino Acids

53.48

Weight (kDa)

7.36

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50950 AT3G20560 AT4G27080
fragaria_vesca FvH4_3g21990 FvH4_3g21990 FvH4_3g21990
malus_domestica MD03G1209500.v1.1 MD11G1224300.v1.1
prunus_persica Prupe.4G205600_v2.0.a1
pyrus_communis pycom03g15830 pycom11g19790 pycom11g19800
rosa_chinensis RchiOBHm_Chr5g0037841
rosa_laevigata RLG00000033816
rosa_multiflora Rmu_sc0005416.1_g000015
rosa_roxburghii Rroxscaffold_1G00043080
rosa_rugosa Rorug05G0168000 Rorug05G0168100
rosa_samantha Rh5AG256900 Rh5DG269200
rosa_wichuraiana Rw5G023820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1172
AarI CACCTGC 1 cut(s) 1276
Acc16I TGCGCA 1 cut(s) 1342
Acc36I ACCTGC 1 cut(s) 1276
Acc65I GGTACC 1 cut(s) 1054
AccB1I GGYRCC 1 cut(s) 1054
AccBSI CCGCTC 1 cut(s) 440
AccII CGCG 1 cut(s) 938
AciI CCGC 4 cut(s) 372, 438, 546, 936
AclWI GGATC 1 cut(s) 566
AcsI RAATTY 5 cut(s) 45, 215, 248, 1259, 1435
AcuI CTGAAG 3 cut(s) 84, 139, 639
AfaI GTAC 3 cut(s) 616, 1056, 1211
AfiI CCNNNNNNNGG 3 cut(s) 799, 872, 1064
AflIII ACRYGT 3 cut(s) 978, 985, 1335
AjiI CACGTC 2 cut(s) 265, 988
AjnI CCWGG 1 cut(s) 916
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AleI CACNNNNGTG 1 cut(s) 1334
AluBI AGCT 3 cut(s) 104, 1227, 1273
AluI AGCT 3 cut(s) 104, 1227, 1273
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 1 cut(s) 767
AlwI GGATC 1 cut(s) 566
AoxI GGCC 3 cut(s) 150, 543, 801
ApeKI GCWGC 2 cut(s) 101, 1224
ApoI RAATTY 5 cut(s) 45, 215, 248, 1259, 1435
AseI ATTAAT 1 cut(s) 1193
Asp718I GGTACC 1 cut(s) 1054
AspLEI GCGC 2 cut(s) 940, 1343
AspS9I GGNCC 3 cut(s) 329, 368, 802
AsuHPI GGTGA 5 cut(s) 413, 428, 455, 638, 1042
AvaII GGWCC 2 cut(s) 329, 368
AxyI CCTNAGG 1 cut(s) 1026
BanI GGYRCC 1 cut(s) 1054
BanII GRGCYC 2 cut(s) 952, 1275
BbsI GAAGAC 1 cut(s) 1232
Bbv12I GWGCWC 1 cut(s) 1275
BbvI GCAGC 2 cut(s) 113, 1236
BccI CCATC 5 cut(s) 188, 392, 413, 578, 670
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 918
BclI TGATCA 1 cut(s) 718
BcoDI GTCTC 1 cut(s) 767
BfaI CTAG 2 cut(s) 1118, 1427
BfmI CTRYAG 1 cut(s) 324
BfuAI ACCTGC 1 cut(s) 1276
BisI GCNGC 3 cut(s) 102, 546, 1225
BlsI GCNGC 3 cut(s) 103, 547, 1226
Bme1390I CCNGG 1 cut(s) 918
Bme18I GGWCC 2 cut(s) 329, 368
BmgBI CACGTC 2 cut(s) 265, 988
BmgT120I GGNCC 3 cut(s) 329, 368, 802
BmiI GGNNCC 4 cut(s) 370, 915, 949, 1056
BmrFI CCNGG 1 cut(s) 918
BmsI GCATC 4 cut(s) 77, 263, 478, 952
BpiI GAAGAC 1 cut(s) 1232
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BpmI CTGGAG 1 cut(s) 532
BsaAI YACGTR 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 661
BsaJI CCNNGG 3 cut(s) 9, 500, 706
BsaXI ACNNNNNCTCC 4 cut(s) 505, 535, 1193, 1223
Bsc4I CCNNNNNNNGG 3 cut(s) 799, 872, 1064
Bse1I ACTGG 3 cut(s) 352, 515, 1250
Bse21I CCTNAGG 1 cut(s) 1026
Bse8I GATNNNNATC 1 cut(s) 661
BseBI CCWGG 1 cut(s) 918
BseDI CCNNGG 3 cut(s) 9, 500, 706
BseGI GGATG 5 cut(s) 254, 403, 469, 706, 1020
BseJI GATNNNNATC 1 cut(s) 661
BseLI CCNNNNNNNGG 3 cut(s) 799, 872, 1064
BseMII CTCAG 2 cut(s) 345, 378
BseNI ACTGG 3 cut(s) 352, 515, 1250
BseRI GAGGAG 1 cut(s) 1214
BseXI GCAGC 2 cut(s) 113, 1236
BsgI GTGCAG 3 cut(s) 102, 219, 1376
Bsh1236I CGCG 1 cut(s) 938
BshFI GGCC 3 cut(s) 152, 545, 803
BshNI GGYRCC 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 1275
BslFI GGGAC 2 cut(s) 212, 853
BslI CCNNNNNNNGG 3 cut(s) 799, 872, 1064
BsmAI GTCTC 1 cut(s) 767
BsmFI GGGAC 2 cut(s) 212, 853
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 3 cut(s) 152, 545, 803
Bsp1286I GDGCHC 2 cut(s) 952, 1275
Bsp143I GATC 5 cut(s) 18, 571, 718, 739, 1114
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 4 cut(s) 372, 438, 546, 936
BspANI GGCC 3 cut(s) 152, 545, 803
BspCNI CTCAG 2 cut(s) 346, 377
BspFNI CGCG 1 cut(s) 938
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 4 cut(s) 370, 915, 949, 1056
BspMI ACCTGC 1 cut(s) 1276
BspPI GGATC 1 cut(s) 566
BspT107I GGYRCC 1 cut(s) 1054
BsrBI CCGCTC 1 cut(s) 440
BsrI ACTGG 3 cut(s) 352, 515, 1250
BssECI CCNNGG 3 cut(s) 9, 500, 706
BssMI GATC 5 cut(s) 18, 571, 718, 739, 1114
BssT1I CCWWGG 2 cut(s) 500, 706
Bst2UI CCWGG 1 cut(s) 918
Bst4CI ACNGT 1 cut(s) 1366
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 209
BstDEI CTNAG 3 cut(s) 354, 364, 1026
BstDSI CCRYGG 2 cut(s) 9, 706
BstF5I GGATG 5 cut(s) 254, 403, 469, 706, 1020
BstFNI CGCG 1 cut(s) 938
BstHHI GCGC 2 cut(s) 940, 1343
BstKTI GATC 5 cut(s) 21, 574, 721, 742, 1117
BstMAI GTCTC 1 cut(s) 767
BstMBI GATC 5 cut(s) 18, 571, 718, 739, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 107, 513
BstNI CCWGG 1 cut(s) 918
BstNSI RCATGY 1 cut(s) 982
BstSCI CCNGG 1 cut(s) 916
BstSFI CTRYAG 1 cut(s) 324
BstSNI TACGTA 1 cut(s) 209
BstUI CGCG 1 cut(s) 938
BstV1I GCAGC 2 cut(s) 113, 1236
BstV2I GAAGAC 1 cut(s) 1232
Bsu36I CCTNAGG 1 cut(s) 1026
BsuRI GGCC 3 cut(s) 152, 545, 803
BtgI CCRYGG 2 cut(s) 9, 706
BtrI CACGTC 2 cut(s) 265, 988
BtsCI GGATG 5 cut(s) 254, 403, 469, 706, 1020
BtsIMutI CAGTG 2 cut(s) 345, 866
BveI ACCTGC 1 cut(s) 1276
CciI TCATGA 1 cut(s) 721
CfoI GCGC 2 cut(s) 940, 1343
Cfr13I GGNCC 3 cut(s) 329, 368, 802
Csp6I GTAC 3 cut(s) 615, 1055, 1210
CviQI GTAC 3 cut(s) 615, 1055, 1210
DdeI CTNAG 3 cut(s) 354, 364, 1026
DpnI GATC 5 cut(s) 20, 573, 720, 741, 1116
DpnII GATC 5 cut(s) 18, 571, 718, 739, 1114
DraI TTTAAA 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 1273
Eco105I TACGTA 1 cut(s) 209
Eco130I CCWWGG 2 cut(s) 500, 706
Eco24I GRGCYC 2 cut(s) 952, 1275
Eco32I GATATC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 329, 368
Eco53kI GAGCTC 1 cut(s) 1273
Eco57I CTGAAG 3 cut(s) 84, 139, 639
Eco81I CCTNAGG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 1273
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 916
EcoRV GATATC 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 500, 706
EcoT38I GRGCYC 2 cut(s) 952, 1275
ErhI CCWWGG 2 cut(s) 500, 706
FaqI GGGAC 2 cut(s) 212, 853
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 718
Fnu4HI GCNGC 3 cut(s) 102, 546, 1225
FokI GGATG 5 cut(s) 241, 410, 456, 713, 1027
FriOI GRGCYC 2 cut(s) 952, 1275
Fsp4HI GCNGC 3 cut(s) 102, 546, 1225
FspBI CTAG 2 cut(s) 1118, 1427
FspI TGCGCA 1 cut(s) 1342
GlaI GCGC 2 cut(s) 939, 1342
GluI GCNGC 3 cut(s) 102, 546, 1225
GsuI CTGGAG 1 cut(s) 532
HaeIII GGCC 3 cut(s) 152, 545, 803
HhaI GCGC 2 cut(s) 940, 1343
Hin6I GCGC 2 cut(s) 938, 1341
HinP1I GCGC 2 cut(s) 938, 1341
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 3 cut(s) 643, 725, 1382
HphI GGTGA 5 cut(s) 413, 428, 455, 638, 1042
Hpy166II GTNNAC 3 cut(s) 181, 459, 1212
Hpy188I TCNGA 5 cut(s) 193, 355, 525, 832, 1308
Hpy188III TCNNGA 7 cut(s) 332, 366, 575, 722, 743, 945, 1112
Hpy8I GTNNAC 3 cut(s) 181, 459, 1212
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 8 cut(s) 163, 535, 540, 617, 884, 904, 967, 1157
HpyCH4III ACNGT 1 cut(s) 1366
HpyCH4IV ACGT 4 cut(s) 208, 264, 987, 1335
HpyCH4V TGCA 8 cut(s) 83, 236, 254, 851, 1234, 1256, 1285, 1393
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 513
HpyF3I CTNAG 3 cut(s) 354, 364, 1026
HpySE526I ACGT 4 cut(s) 208, 264, 987, 1335
HspAI GCGC 2 cut(s) 938, 1341
KpnI GGTACC 1 cut(s) 1058
Ksp22I TGATCA 1 cut(s) 718
Kzo9I GATC 5 cut(s) 18, 571, 718, 739, 1114
LmnI GCTCC 4 cut(s) 502, 513, 947, 1027
Lsp1109I GCAGC 2 cut(s) 113, 1236
LweI GCATC 4 cut(s) 77, 263, 478, 952
MaeI CTAG 2 cut(s) 1118, 1427
MaeII ACGT 4 cut(s) 208, 264, 987, 1335
MaeIII GTNAC 3 cut(s) 626, 981, 1129
MalI GATC 5 cut(s) 20, 573, 720, 741, 1116
MbiI CCGCTC 1 cut(s) 440
MboI GATC 5 cut(s) 18, 571, 718, 739, 1114
MboII GAAGA 4 cut(s) 632, 919, 1191, 1232
MhlI GDGCHC 2 cut(s) 952, 1275
MnlI CCTC 8 cut(s) 172, 633, 690, 793, 814, 869, 1192, 1346
MseI TTAA 7 cut(s) 219, 338, 387, 486, 762, 1193, 1292
MslI CAYNNNNRTG 7 cut(s) 241, 263, 396, 720, 1286, 1334, 1406
MspR9I CCNGG 1 cut(s) 918
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 918
MvnI CGCG 1 cut(s) 938
MwoI GCNNNNNNNGC 2 cut(s) 107, 513
NcoI CCATGG 1 cut(s) 706
NdeII GATC 5 cut(s) 18, 571, 718, 739, 1114
NlaIV GGNNCC 4 cut(s) 370, 915, 949, 1056
NmuCI GTSAC 2 cut(s) 626, 981
NsbI TGCGCA 1 cut(s) 1342
NspI RCATGY 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 1334
PagI TCATGA 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 1276
PciI ACATGT 1 cut(s) 978
PcsI WCGNNNNNNNCGW 1 cut(s) 676
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 3 cut(s) 643, 725, 1382
PfoI TCCNGGA 1 cut(s) 916
PkrI GCNGC 3 cut(s) 103, 547, 1226
Ppu21I YACGTR 1 cut(s) 209
PpuMI RGGWCCY 1 cut(s) 368
PscI ACATGT 1 cut(s) 978
PshBI ATTAAT 1 cut(s) 1193
PsiI TTATAA 1 cut(s) 1172
Psp124BI GAGCTC 1 cut(s) 1275
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 916
PspGI CCWGG 1 cut(s) 916
PspN4I GGNNCC 4 cut(s) 370, 915, 949, 1056
PspPI GGNCC 3 cut(s) 329, 368, 802
PspPPI RGGWCCY 1 cut(s) 368
RsaI GTAC 3 cut(s) 616, 1056, 1211
RsaNI GTAC 3 cut(s) 615, 1055, 1210
RseI CAYNNNNRTG 7 cut(s) 241, 263, 396, 720, 1286, 1334, 1406
SacI GAGCTC 1 cut(s) 1275
SaqAI TTAA 7 cut(s) 219, 338, 387, 486, 762, 1193, 1292
SatI GCNGC 3 cut(s) 102, 546, 1225
Sau3AI GATC 5 cut(s) 18, 571, 718, 739, 1114
Sau96I GGNCC 3 cut(s) 329, 368, 802
ScrFI CCNGG 1 cut(s) 918
SduI GDGCHC 2 cut(s) 952, 1275
SfaNI GCATC 4 cut(s) 77, 263, 478, 952
SfcI CTRYAG 1 cut(s) 324
SinI GGWCC 2 cut(s) 329, 368
SmiMI CAYNNNNRTG 7 cut(s) 241, 263, 396, 720, 1286, 1334, 1406
SnaBI TACGTA 1 cut(s) 209
SsiI CCGC 4 cut(s) 372, 438, 546, 936
SspMI CTAG 2 cut(s) 1118, 1427
SstI GAGCTC 1 cut(s) 1275
StyD4I CCNGG 1 cut(s) 916
StyI CCWWGG 2 cut(s) 500, 706
TaaI ACNGT 1 cut(s) 1366
TaiI ACGT 4 cut(s) 211, 267, 990, 1338
TaqI TCGA 5 cut(s) 30, 442, 742, 960, 1269
TaqII GACCGA 1 cut(s) 1083
TatI WGTACW 2 cut(s) 614, 1209
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 3 cut(s) 643, 725, 1382
Tru1I TTAA 7 cut(s) 219, 338, 387, 486, 762, 1193, 1292
Tru9I TTAA 7 cut(s) 219, 338, 387, 486, 762, 1193, 1292
TscAI CASTG 2 cut(s) 352, 873
TseFI GTSAC 2 cut(s) 626, 981
TseI GCWGC 2 cut(s) 101, 1224
Tsp45I GTSAC 2 cut(s) 626, 981
TspDTI ATGAA 6 cut(s) 420, 522, 738, 989, 993, 1090
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 352, 873
VpaK11BI GGWCC 2 cut(s) 329, 368
VspI ATTAAT 1 cut(s) 1193
XapI RAATTY 5 cut(s) 45, 215, 248, 1259, 1435
XceI RCATGY 1 cut(s) 982
XspI CTAG 2 cut(s) 1118, 1427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.