Rorug05G0168000

Early nodulin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009964
Physical Location & Seq
Forward (+)
15585423 .. 15589821
4399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0168000.1

Sequence Viewer

Length: 2580 bp
ATGTGGGTTCCTTCAATTACACTGAGTTTTCCCAGAAAGCTCATTCAATCACCAAGAACTAATCTCAACCATTTTAAGCTCATCAATTGGTTTTCAAGTTTCTCACTTTCTGATGATAATGATTGTTGCACTACAAACACTAACACAAGCACCCAAGAGGTTTATGGTGGTGGGATTGTGTGTGGTTTCAAGTGGGCATCGCCGCAGCAACCGGCTATTGCCCACTGTGATTCAAGGTCTTCAGAGTCTGGTGGTATTAGTTCAGTTACTGATTGCAGAACAGACATTACCAATGCCAAGAGGAACAGTTTGGTTGCGGACTTGGAGACGTCGGAGGTTGTTAACAAGCTCAATGGGTTTAAAAGCAAACCCAATTCGGCGTTTTCCTTGTTCCGCCAGTTGAAGGAAGAAGGGTTCCAGCACAATGTTTTGACATACTGTGCGCTTGTAAGGATATTGTGTTATTGGCGTTTGGATAGGAAGTTGGATTCTCTGTTCTTGGAGGTTATTAGTGGCGCTCGAGACATTGGATTTCGATTATTGGATTTGTTGGAAGCGATGGAGGAGGAAATTGAGGTTTCCCCGTCAATAGCTCGGGGTTTTGATGCATTGGTTAAGTCTCTTGTCAATCTCAACATGTTTGATGAGGCTAGTGATGTTTTGTTCCATACCAGAAGGTGTGGATTTGTGCCGCATATCTTTACAGTTAATTTTCTGATGAATCGGTTGATTGAGCATGGTGAAGTGGGTGCGGCTTTGTCTATATACAAGCAGTTGAAGGGGATTGGTTTGGTCCCTAATGATTACACCTATGCAATTGTCATCAAGGGATTTTGTAAGGAGGGTAGGTTGGAAGAGGCTGGGGAAGTGTTTGAGGAGATGGAGTTAGCCGGGGTAGCCCCTAGCGTGTTTGCTTACACAGCATATATTGAAGGACTTTGCAACAAGGGGCGTTCTGATGTAGGATGTCAAGTGCTCCAATATTGCAAAAGTGAAAATATCCTTCTTGATGCCTATGCATATAAAGCTGTCATTCGTGGGTTCTGTGATGAGATGAAATTTGATGAAGCAGAAAGTCTCTTTTTTGACATGGAAAAGCAAGGCGTGGTGCCTGATTCATGCATCTATAGTGCAATGATCAGTGGCTACTGCAAGAATTACAATTTGTTAAAGGCTTTGGCTCTCCATAATGACATGGTGTCAAAGGGTATAAAAACAAATTGTGTGATTGTTGGTTTTATTCTTCAGTGCCTCTGTAAGATTGGAATGCCTTCTGATGCTGTGGATCAATTCATAGAATTTAAGAGCATGGGGATATATCTTGATGAGGTTACCTACAATATTGCGGTTGATGCTTTATGCACACTGCGGAGAGTGGAAGAAGCCTCCGAATTGCTGGAAGAGATGAAGCTTAAGCATATGAGCTTAGATATTATGCATTACACCACGTTACTTAAAGGGTACTGTCTCCAAGGGAAAGTTGTTGATGCCACGAATCTTTTGGAGGAAATGTATGAGAAGGGTTTGAAGCCAGATATTATTACTTACAATGTCCTTGCTGCAGGGTTTTCTAGAAATGGACTGGTATCTAAGGCGCTTGGCCTTTTGGTTTATATGGAGGCACAGGGTTTTAAACCGGACTCTGTTACACACAGCATGGTAATTGAGAATCTCTGCATAGGAGGAAAAGTCAAAGAAGCTGAAGCATTTTTAAATAATTTGGTAGATAAGAGTGAAGAGACCTACACTGCTCTGATCCGTGGATACTGTGAAGCTAACAATACAAGGAAGGCCTATGAACTTATTTCTAGGCTGGCAAAGCAGGGAACCATTAACAAAGGTGCTTGCTTTAAAGTACTTGGTAACCTTTGTATGGAAGGTGATAATGACAGTGCTATCTTGTTGTTTGAGAGAATGTTCGCCTTAAATGTGGAACCTAAGAGAATTATGTACAGCAAACTCATAGCTTCTCTCTGCCAGGCTGGAGAGGTGCAAAAGGCCCGCCTGTTTTTTGATTCTTCAGTTGCGAGAGGGTTTACTCCTGATGTCATTGACTACACAGTGATGATAAATAGCTACTGCAGGGGGAATTCTTTGCGGGAAGCCCATGATCTCTTCCATGATATGAAAAAGAGAGGGATTCAACCTGATATCATCACTTACACAGTTTTGCTAGATGGATTTTCGAAAAGAAACATAAGAAGGGTTCGTTCCCCTCTAGATGCAAGGGGAAATAGGGAAGAAATGGCGGATGCTTCTACTATACTTTGGACTGAGATGAAGGAAATGGGAATAAGACCTGATGCCATTTGTTATACTGTTTTGATAGACAGGCATTGTAAAACAGACAACCTTCAGGATGCTATTGCACTCTTTGACTTAATGGTTGACAGAGGATTAAAACCTGATACAGTGACGTACACAGCTCTTCTGTCTGGCTGTTGTAATAGAAGAGATGTGGATAGGGCTGTAACCCTAGTTAATGAGATGTCTTCGAAGGGAATCCAGCCAGATGCCTGCACACTGTCGGTTCTACAGCATGGAATCTTAAAAGCCAAAAAAATGCAGTTTCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

859

Amino Acids

96.25

Weight (kDa)

5.91

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 231 - 280 9.3e-11 PPR repeat family
PPR_1 PF12854 263 - 295 3.9e-12 PPR repeat
PPR PF01535 269 - 299 5e-07 PPR repeat
PPR_2 PF13041 273 - 315 8.1e-11 PPR repeat family
PPR_2 PF13041 301 - 350 1.7e-07 PPR repeat family
PPR_2 PF13041 337 - 385 1.2e-10 PPR repeat family
PPR_1 PF12854 368 - 400 6.7e-07 PPR repeat
PPR_2 PF13041 371 - 408 1.9e-07 PPR repeat family
PPR PF01535 375 - 404 1.2e-06 PPR repeat
PPR_2 PF13041 413 - 454 8.1e-07 PPR repeat family
PPR_1 PF12854 437 - 470 4.1e-08 PPR repeat
PPR_3 PF13812 465 - 519 6.3e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 473 - 504 8.7e-08 PPR repeat
PPR_2 PF13041 477 - 524 1.6e-12 PPR repeat family
PPR_1 PF12854 507 - 540 2.4e-06 PPR repeat
PPR_2 PF13041 522 - 559 1e-05 PPR repeat family
PPR_2 PF13041 649 - 695 9.2e-07 PPR repeat family
PPR_3 PF13812 672 - 729 2.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 677 - 710 2.6e-08 PPR repeat
PPR_2 PF13041 681 - 730 1.1e-17 PPR repeat family
PPR PF01535 686 - 714 1.9e-07 PPR repeat
PPR_1 PF12854 763 - 796 8.4e-07 PPR repeat
PPR_2 PF13041 767 - 816 3.4e-16 PPR repeat family
PPR_3 PF13812 791 - 845 3.4e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 798 - 831 1.2e-10 PPR repeat
PPR_2 PF13041 802 - 848 3.3e-13 PPR repeat family
PPR PF01535 805 - 835 2.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50950 AT3G20560 AT4G27080
fragaria_vesca FvH4_3g21990 FvH4_3g21990 FvH4_3g21990
malus_domestica MD03G1209500.v1.1 MD11G1224300.v1.1
prunus_persica Prupe.4G205600_v2.0.a1
pyrus_communis pycom03g15830 pycom11g19790 pycom11g19800
rosa_chinensis RchiOBHm_Chr5g0037841
rosa_laevigata RLG00000033816
rosa_multiflora Rmu_sc0005416.1_g000015
rosa_roxburghii Rroxscaffold_1G00043080
rosa_rugosa Rorug05G0168000 Rorug05G0168100
rosa_samantha Rh5AG256900 Rh5DG269200
rosa_wichuraiana Rw5G023820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 1108
AclWI GGATC 2 cut(s) 1293, 1750
AcsI RAATTY 3 cut(s) 1058, 1298, 2089
AcuI CTGAAG 5 cut(s) 225, 1229, 1722, 2004, 2339
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 4 cut(s) 1463, 1857, 1952, 2420
AfiI CCNNNNNNNGG 2 cut(s) 403, 1873
AflII CTTAAG 1 cut(s) 1412
AflIII ACRYGT 1 cut(s) 636
AhdI GACNNNNNGTC 1 cut(s) 1198
AjnI CCWGG 1 cut(s) 1977
AloI GAACNNNNNNTCC 4 cut(s) 398, 430, 479, 511
Alw21I GWGCWC 1 cut(s) 978
Alw26I GTCTC 6 cut(s) 320, 516, 624, 1082, 1472, 1733
AlwI GGATC 2 cut(s) 1293, 1750
AlwNI CAGNNNCTG 2 cut(s) 248, 269
Ama87I CYCGRG 2 cut(s) 519, 594
AoxI GGCC 3 cut(s) 1600, 1791, 1998
ApeKI GCWGC 2 cut(s) 205, 1559
ApoI RAATTY 3 cut(s) 1058, 1298, 2089
Asp700I GAANNNNTTC 1 cut(s) 1270
AspLEI GCGC 3 cut(s) 445, 518, 1597
AspS9I GGNCC 2 cut(s) 793, 1999
AsuC2I CCSGG 1 cut(s) 892
AsuHPI GGTGA 3 cut(s) 42, 752, 1892
AsuII TTCGAA 2 cut(s) 2186, 2495
AvaI CYCGRG 2 cut(s) 519, 594
AvaII GGWCC 1 cut(s) 793
BanI GGYRCC 1 cut(s) 1108
BbsI GAAGAC 2 cut(s) 231, 2484
Bbv12I GWGCWC 1 cut(s) 978
BbvI GCAGC 2 cut(s) 217, 1546
BccI CCATC 3 cut(s) 553, 874, 2171
BciT130I CCWGG 1 cut(s) 1979
BciVI GTATCC 1 cut(s) 1757
BclI TGATCA 1 cut(s) 1137
BcnI CCSGG 1 cut(s) 892
BcoDI GTCTC 6 cut(s) 320, 516, 624, 1082, 1472, 1733
BfaI CTAG 7 cut(s) 651, 903, 1572, 1809, 2174, 2219, 2477
BfmI CTRYAG 4 cut(s) 1126, 1560, 2080, 2534
BfoI RGCGCY 2 cut(s) 519, 1598
BfrI CTTAAG 1 cut(s) 1412
BfuI GTATCC 1 cut(s) 1757
BisI GCNGC 5 cut(s) 203, 206, 692, 753, 1560
BlsI GCNGC 5 cut(s) 204, 207, 693, 754, 1561
BmcAI AGTACT 1 cut(s) 1857
Bme1390I CCNGG 2 cut(s) 892, 1979
Bme18I GGWCC 1 cut(s) 793
BmeRI GACNNNNNGTC 1 cut(s) 1198
BmeT110I CYCGRG 2 cut(s) 519, 594
BmgT120I GGNCC 2 cut(s) 793, 1999
BmiI GGNNCC 6 cut(s) 9, 416, 795, 1110, 1828, 1935
BmrFI CCNGG 2 cut(s) 892, 1979
BpiI GAAGAC 2 cut(s) 231, 2484
BpmI CTGGAG 1 cut(s) 2004
Bpu14I TTCGAA 2 cut(s) 2186, 2495
BpuMI CCSGG 1 cut(s) 892
BsaHI GRCGYC 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 1733
BsaJI CCNNGG 3 cut(s) 891, 1471, 1759
BsaWI WCCGGW 1 cut(s) 1636
BsaXI ACNNNNNCTCC 8 cut(s) 833, 863, 869, 899, 1496, 1526, 1674, 1704
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 1873
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 2 cut(s) 397, 1587
Bse3DI GCAATG 1 cut(s) 1140
BseBI CCWGG 1 cut(s) 1979
BseDI CCNNGG 3 cut(s) 891, 1471, 1759
BseGI GGATG 3 cut(s) 971, 2257, 2365
BseLI CCNNNNNNNGG 2 cut(s) 403, 1873
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 2 cut(s) 14, 2265
BseNI ACTGG 2 cut(s) 397, 1587
BseRI GAGGAG 2 cut(s) 578, 890
BseXI GCAGC 2 cut(s) 217, 1546
BseYI CCCAGC 1 cut(s) 860
BsgI GTGCAG 1 cut(s) 2503
BshFI GGCC 3 cut(s) 1602, 1793, 2000
BshNI GGYRCC 1 cut(s) 1108
BsiHKAI GWGCWC 1 cut(s) 978
BsiHKCI CYCGRG 2 cut(s) 519, 594
BsiSI CCGG 3 cut(s) 212, 891, 1637
BslFI GGGAC 1 cut(s) 779
BslI CCNNNNNNNGG 2 cut(s) 403, 1873
BsmAI GTCTC 6 cut(s) 320, 516, 624, 1082, 1472, 1733
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 779
BsmI GAATGC 1 cut(s) 1272
BsnI GGCC 3 cut(s) 1602, 1793, 2000
Bso31I GGTCTC 1 cut(s) 1733
BsoBI CYCGRG 2 cut(s) 519, 594
Bsp119I TTCGAA 2 cut(s) 2186, 2495
Bsp1286I GDGCHC 1 cut(s) 978
Bsp1407I TGTACA 1 cut(s) 1950
Bsp143I GATC 4 cut(s) 1137, 1285, 1755, 2110
BspANI GGCC 3 cut(s) 1602, 1793, 2000
BspCNI CTCAG 2 cut(s) 15, 2266
BspLI GGNNCC 6 cut(s) 9, 416, 795, 1110, 1828, 1935
BspMAI CTGCAG 2 cut(s) 1564, 2084
BspPI GGATC 2 cut(s) 1293, 1750
BspQI GCTCTTC 1 cut(s) 2433
BspT104I TTCGAA 2 cut(s) 2186, 2495
BspT107I GGYRCC 1 cut(s) 1108
BspTI CTTAAG 1 cut(s) 1412
BspTNI GGTCTC 1 cut(s) 1733
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 1 cut(s) 211
BsrGI TGTACA 1 cut(s) 1950
BsrI ACTGG 2 cut(s) 397, 1587
BssAI RCCGGY 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 891, 1471, 1759
BssMI GATC 4 cut(s) 1137, 1285, 1755, 2110
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 1471
Bst2UI CCWGG 1 cut(s) 1979
Bst6I CTCTTC 6 cut(s) 849, 1395, 1731, 2120, 2433, 2446
BstACI GRCGYC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 1412
BstAUI TGTACA 1 cut(s) 1950
BstBI TTCGAA 2 cut(s) 2186, 2495
BstC8I GCNNGC 4 cut(s) 1815, 1846, 2002, 2518
BstDEI CTNAG 5 cut(s) 23, 1426, 1590, 1938, 2274
BstDSI CCRYGG 1 cut(s) 1759
BstEII GGTNACC 2 cut(s) 1330, 1862
BstF5I GGATG 3 cut(s) 971, 2257, 2365
BstH2I RGCGCY 2 cut(s) 519, 1598
BstHHI GCGC 3 cut(s) 445, 518, 1597
BstKTI GATC 4 cut(s) 1140, 1288, 1758, 2113
BstMAI GTCTC 6 cut(s) 320, 516, 624, 1082, 1472, 1733
BstMBI GATC 4 cut(s) 1137, 1285, 1755, 2110
BstMWI GCNNNNNNNGC 5 cut(s) 896, 920, 1025, 1352, 1819
BstNI CCWGG 1 cut(s) 1979
BstNSI RCATGY 1 cut(s) 640
BstPI GGTNACC 2 cut(s) 1330, 1862
BstSCI CCNGG 2 cut(s) 890, 1977
BstSFI CTRYAG 4 cut(s) 1126, 1560, 2080, 2534
BstV1I GCAGC 2 cut(s) 217, 1546
BstV2I GAAGAC 2 cut(s) 231, 2484
BsuI GTATCC 1 cut(s) 1757
BsuRI GGCC 3 cut(s) 1602, 1793, 2000
BtgI CCRYGG 1 cut(s) 1759
BtgZI GCGATG 2 cut(s) 183, 572
BtsCI GGATG 3 cut(s) 971, 2257, 2365
BtsI GCAGTG 2 cut(s) 1364, 1746
Cac8I GCNNGC 4 cut(s) 1815, 1846, 2002, 2518
CaiI CAGNNNCTG 2 cut(s) 248, 269
CfoI GCGC 3 cut(s) 445, 518, 1597
Cfr10I RCCGGY 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 793, 1999
Csp6I GTAC 4 cut(s) 1462, 1856, 1951, 2419
CviQI GTAC 4 cut(s) 1462, 1856, 1951, 2419
DdeI CTNAG 5 cut(s) 23, 1426, 1590, 1938, 2274
DpnI GATC 4 cut(s) 1139, 1287, 1757, 2112
DpnII GATC 4 cut(s) 1137, 1285, 1755, 2110
DraI TTTAAA 4 cut(s) 361, 1633, 1713, 1852
DriI GACNNNNNGTC 1 cut(s) 1198
Eam1104I CTCTTC 6 cut(s) 849, 1395, 1731, 2120, 2433, 2446
Eam1105I GACNNNNNGTC 1 cut(s) 1198
EarI CTCTTC 6 cut(s) 849, 1395, 1731, 2120, 2433, 2446
EciI GGCGGA 2 cut(s) 383, 2264
Eco130I CCWWGG 1 cut(s) 1471
Eco147I AGGCCT 1 cut(s) 1793
Eco31I GGTCTC 1 cut(s) 1733
Eco32I GATATC 1 cut(s) 2152
Eco47I GGWCC 1 cut(s) 793
Eco57I CTGAAG 5 cut(s) 225, 1229, 1722, 2004, 2339
Eco88I CYCGRG 2 cut(s) 519, 594
Eco91I GGTNACC 2 cut(s) 1330, 1862
EcoO65I GGTNACC 2 cut(s) 1330, 1862
EcoRI GAATTC 1 cut(s) 2089
EcoRII CCWGG 1 cut(s) 1977
EcoRV GATATC 1 cut(s) 2152
EcoT14I CCWWGG 1 cut(s) 1471
EcoT22I ATGCAT 4 cut(s) 610, 1021, 1124, 1440
ErhI CCWWGG 1 cut(s) 1471
Esp3I CGTCTC 1 cut(s) 320
FaqI GGGAC 1 cut(s) 779
FauI CCCGC 2 cut(s) 2009, 2091
FauNDI CATATG 1 cut(s) 1419
FbaI TGATCA 1 cut(s) 1137
Fnu4HI GCNGC 5 cut(s) 203, 206, 692, 753, 1560
FokI GGATG 3 cut(s) 978, 2264, 2372
Fsp4HI GCNGC 5 cut(s) 203, 206, 692, 753, 1560
FspBI CTAG 7 cut(s) 651, 903, 1572, 1809, 2174, 2219, 2477
GlaI GCGC 3 cut(s) 444, 517, 1596
GluI GCNGC 5 cut(s) 203, 206, 692, 753, 1560
GsaI CCCAGC 1 cut(s) 864
GsuI CTGGAG 1 cut(s) 2004
HaeII RGCGCY 2 cut(s) 519, 1598
HaeIII GGCC 3 cut(s) 1602, 1793, 2000
HapII CCGG 3 cut(s) 212, 891, 1637
HhaI GCGC 3 cut(s) 445, 518, 1597
Hin1I GRCGYC 1 cut(s) 329
Hin6I GCGC 3 cut(s) 443, 516, 1595
HinP1I GCGC 3 cut(s) 443, 516, 1595
HincII GTYRAC 2 cut(s) 343, 2389
HindII GTYRAC 2 cut(s) 343, 2389
HindIII AAGCTT 1 cut(s) 1409
HpaI GTTAAC 1 cut(s) 343
HpaII CCGG 3 cut(s) 212, 891, 1637
HphI GGTGA 3 cut(s) 42, 752, 1892
Hpy166II GTNNAC 4 cut(s) 343, 2037, 2389, 2421
Hpy188I TCNGA 9 cut(s) 112, 244, 334, 717, 958, 1276, 1390, 1755, 2574
Hpy188III TCNNGA 7 cut(s) 521, 1007, 1322, 1572, 2042, 2219, 2357
Hpy8I GTNNAC 4 cut(s) 343, 2037, 2389, 2421
Hpy99I CGWCG 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 329, 1448, 2417
HpyF10VI GCNNNNNNNGC 5 cut(s) 896, 920, 1025, 1352, 1819
HpyF3I CTNAG 5 cut(s) 23, 1426, 1590, 1938, 2274
HpySE526I ACGT 3 cut(s) 329, 1448, 2417
Hsp92I GRCGYC 1 cut(s) 329
HspAI GCGC 3 cut(s) 443, 516, 1595
Ksp22I TGATCA 1 cut(s) 1137
KspAI GTTAAC 1 cut(s) 343
Kzo9I GATC 4 cut(s) 1137, 1285, 1755, 2110
LguI GCTCTTC 1 cut(s) 2433
LmnI GCTCC 1 cut(s) 981
Lsp1109I GCAGC 2 cut(s) 217, 1546
MaeI CTAG 7 cut(s) 651, 903, 1572, 1809, 2174, 2219, 2477
MaeII ACGT 3 cut(s) 329, 1448, 2417
MaeIII GTNAC 7 cut(s) 265, 1330, 1449, 1645, 1862, 2413, 2470
MalI GATC 4 cut(s) 1139, 1287, 1757, 2112
MboI GATC 4 cut(s) 1137, 1285, 1755, 2110
MfeI CAATTG 2 cut(s) 85, 816
MhlI GDGCHC 1 cut(s) 978
MlyI GAGTC 2 cut(s) 254, 1634
MmeI TCCRAC 4 cut(s) 312, 465, 531, 831
Mph1103I ATGCAT 4 cut(s) 610, 1021, 1124, 1440
MroXI GAANNNNTTC 1 cut(s) 1270
MslI CAYNNNNRTG 1 cut(s) 2063
MspCI CTTAAG 1 cut(s) 1412
MspI CCGG 3 cut(s) 212, 891, 1637
MspR9I CCNGG 2 cut(s) 892, 1979
MunI CAATTG 2 cut(s) 85, 816
Mva1269I GAATGC 1 cut(s) 1272
MvaI CCWGG 1 cut(s) 1979
MwoI GCNNNNNNNGC 5 cut(s) 896, 920, 1025, 1352, 1819
NciI CCSGG 1 cut(s) 892
NdeI CATATG 1 cut(s) 1419
NdeII GATC 4 cut(s) 1137, 1285, 1755, 2110
NlaIV GGNNCC 6 cut(s) 9, 416, 795, 1110, 1828, 1935
NmuCI GTSAC 1 cut(s) 2413
NsiI ATGCAT 4 cut(s) 610, 1021, 1124, 1440
NspI RCATGY 1 cut(s) 640
NspV TTCGAA 2 cut(s) 2186, 2495
PaeR7I CTCGAG 1 cut(s) 519
PceI AGGCCT 1 cut(s) 1793
PciI ACATGT 1 cut(s) 636
PciSI GCTCTTC 1 cut(s) 2433
PctI GAATGC 1 cut(s) 1272
PdmI GAANNNNTTC 1 cut(s) 1270
PkrI GCNGC 5 cut(s) 204, 207, 693, 754, 1561
PleI GAGTC 2 cut(s) 253, 1634
PpsI GAGTC 2 cut(s) 253, 1634
PscI ACATGT 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 1977
PspEI GGTNACC 2 cut(s) 1330, 1862
PspFI CCCAGC 1 cut(s) 860
PspGI CCWGG 1 cut(s) 1977
PspN4I GGNNCC 6 cut(s) 9, 416, 795, 1110, 1828, 1935
PspPI GGNCC 2 cut(s) 793, 1999
PsrI GAACNNNNNNTAC 2 cut(s) 271, 303
PstI CTGCAG 2 cut(s) 1564, 2084
PstNI CAGNNNCTG 2 cut(s) 248, 269
RsaI GTAC 4 cut(s) 1463, 1857, 1952, 2420
RsaNI GTAC 4 cut(s) 1462, 1856, 1951, 2419
RseI CAYNNNNRTG 1 cut(s) 2063
SapI GCTCTTC 1 cut(s) 2433
SatI GCNGC 5 cut(s) 203, 206, 692, 753, 1560
Sau3AI GATC 4 cut(s) 1137, 1285, 1755, 2110
Sau96I GGNCC 2 cut(s) 793, 1999
ScaI AGTACT 1 cut(s) 1857
SchI GAGTC 2 cut(s) 254, 1634
ScrFI CCNGG 2 cut(s) 892, 1979
SduI GDGCHC 1 cut(s) 978
SfcI CTRYAG 4 cut(s) 1126, 1560, 2080, 2534
Sfr274I CTCGAG 1 cut(s) 519
SfuI TTCGAA 2 cut(s) 2186, 2495
SinI GGWCC 1 cut(s) 793
SlaI CTCGAG 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 2063
SmlI CTYRAG 2 cut(s) 519, 1412
SmoI CTYRAG 2 cut(s) 519, 1412
SseBI AGGCCT 1 cut(s) 1793
SspI AATATT 2 cut(s) 983, 1342
SspMI CTAG 7 cut(s) 651, 903, 1572, 1809, 2174, 2219, 2477
StuI AGGCCT 1 cut(s) 1793
StyD4I CCNGG 2 cut(s) 890, 1977
StyI CCWWGG 1 cut(s) 1471
TaiI ACGT 3 cut(s) 332, 1451, 2420
TaqI TCGA 4 cut(s) 520, 535, 2186, 2495
TatI WGTACW 2 cut(s) 1855, 1950
TauI GCSGC 3 cut(s) 205, 694, 755
TseFI GTSAC 1 cut(s) 2413
TseI GCWGC 2 cut(s) 205, 1559
Tsp45I GTSAC 1 cut(s) 2413
TspDTI ATGAA 9 cut(s) 734, 1070, 1080, 1107, 1282, 1421, 1812, 2141, 2294
TspGWI ACGGA 1 cut(s) 1748
Vha464I CTTAAG 1 cut(s) 1412
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 3 cut(s) 1058, 1298, 2089
XbaI TCTAGA 2 cut(s) 1571, 2218
XceI RCATGY 1 cut(s) 640
XcmI CCANNNNNNNNNTGG 2 cut(s) 161, 1498
XhoI CTCGAG 1 cut(s) 519
XmnI GAANNNNTTC 1 cut(s) 1270
XspI CTAG 7 cut(s) 651, 903, 1572, 1809, 2174, 2219, 2477
ZraI GACGTC 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 1857
Zsp2I ATGCAT 4 cut(s) 610, 1021, 1124, 1440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.