pycom11g19790

disulfide-isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0009964
Physical Location & Seq
Forward (+)
22304184 .. 22305763
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19790.2

Sequence Viewer

Length: 585 bp
ATGGAAAGTTTGGTTGCATCTATCCCTGTAGATTCTGAAAAACTCGCTTTGGAGGGTAAATCTGACAACAGGGGTGAGAATGCAAAAAGACCAGCACCATTGACAGGAGGGTGTAGAATTGAAGGATATGTGCGTGTTCCAGGAAACCTTGTCATTTCCGCTCATTCGGGAGCTCATTCCTTAGATGCTTCTCAACTGAACATATCTCACGTCATTTCACAATTTTCATTCGGTAGGATGATTGCTCCTAAGGTGATGAGTGATGTCAAGCGATTGGTACCTTATCTTGGTGCAAGCCATGATAGGTTGAATGGTCGGTCTTTCATAAATCACCGTGATTTAGGTGCTAATGTTACAGAAGTCGTAACAGGGAGATCTCATAATTCGATTGAGAAATATGAGTACACGGCGCTCAGCAGCTTGGTGCAAAGCCTCCAAATACCAGTTGCCAAGTTCCATTTCGAGCTCTCCCCCATGCAGGTTTTAATAACAGAAAATCCGAAATCCTTTTCACATTTTATCACGGATGCGTGCGCTATTATTGATGACGTTTTTGCCAAAATAGTTTCTCTTTTTGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003756 GO:0003824 GO:0016853 GO:0016860 GO:0016864 GO:0140096
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COPIIcoated_ERV ERGIC_N Thioredoxin

Protein Analysis

195

Amino Acids

21.15

Weight (kDa)

7.85

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009964)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G50950 AT3G20560 AT4G27080
fragaria_vesca FvH4_3g21990 FvH4_3g21990 FvH4_3g21990
malus_domestica MD03G1209500.v1.1 MD11G1224300.v1.1
prunus_persica Prupe.4G205600_v2.0.a1
pyrus_communis pycom03g15830 pycom11g19790 pycom11g19800
rosa_chinensis RchiOBHm_Chr5g0037841
rosa_laevigata RLG00000033816
rosa_multiflora Rmu_sc0005416.1_g000015
rosa_roxburghii Rroxscaffold_1G00043080
rosa_rugosa Rorug05G0168000 Rorug05G0168100
rosa_samantha Rh5AG256900 Rh5DG269200
rosa_wichuraiana Rw5G023820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 469
Acc65I GGTACC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 161
AciI CCGC 1 cut(s) 159
AfaI GTAC 2 cut(s) 279, 404
AfiI CCNNNNNNNGG 3 cut(s) 104, 287, 478
AgsI TTSAA 2 cut(s) 122, 310
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 3 cut(s) 173, 420, 466
AluI AGCT 3 cut(s) 173, 420, 466
Alw21I GWGCWC 2 cut(s) 175, 468
ApeKI GCWGC 1 cut(s) 417
Asp718I GGTACC 1 cut(s) 277
AspLEI GCGC 2 cut(s) 412, 536
AsuHPI GGTGA 3 cut(s) 86, 265, 323
AxyI CCTNAGG 1 cut(s) 249
BanI GGYRCC 1 cut(s) 277
BanII GRGCYC 2 cut(s) 175, 468
Bbv12I GWGCWC 2 cut(s) 175, 468
BbvI GCAGC 1 cut(s) 429
BceAI ACGGC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 413
BfuAI ACCTGC 1 cut(s) 469
BglII AGATCT 1 cut(s) 374
BisI GCNGC 1 cut(s) 418
BlpI GCTNAGC 1 cut(s) 413
BlsI GCNGC 1 cut(s) 419
Bme1390I CCNGG 1 cut(s) 141
BmgBI CACGTC 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 279
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 26, 175, 517
Bpu1102I GCTNAGC 1 cut(s) 413
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 287, 478
Bse1I ACTGG 1 cut(s) 443
Bse21I CCTNAGG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 243, 532
BseLI CCNNNNNNNGG 3 cut(s) 104, 287, 478
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 2 cut(s) 175, 468
BslI CCNNNNNNNGG 3 cut(s) 104, 287, 478
BsmI GAATGC 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 175, 468
Bsp143I GATC 1 cut(s) 374
Bsp1720I GCTNAGC 1 cut(s) 413
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 469
BspT107I GGYRCC 1 cut(s) 277
BsrBI CCGCTC 1 cut(s) 161
BsrI ACTGG 1 cut(s) 443
BssMI GATC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 141
Bst4CI ACNGT 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 295, 532
BstDEI CTNAG 3 cut(s) 181, 249, 413
BstF5I GGATG 2 cut(s) 243, 532
BstH2I RGCGCY 1 cut(s) 413
BstHHI GCGC 2 cut(s) 412, 536
BstKTI GATC 1 cut(s) 377
BstMBI GATC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 243, 532
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 2 cut(s) 295, 532
CfoI GCGC 2 cut(s) 412, 536
Csp6I GTAC 2 cut(s) 278, 403
CviAII CATG 2 cut(s) 299, 475
CviJI RGCY 5 cut(s) 173, 297, 420, 432, 466
CviKI_1 RGCY 5 cut(s) 173, 297, 420, 432, 466
CviQI GTAC 2 cut(s) 278, 403
DdeI CTNAG 3 cut(s) 181, 249, 413
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
Ecl136II GAGCTC 2 cut(s) 173, 466
Eco24I GRGCYC 2 cut(s) 175, 468
Eco53kI GAGCTC 2 cut(s) 173, 466
Eco81I CCTNAGG 1 cut(s) 249
EcoICRI GAGCTC 2 cut(s) 173, 466
EcoRII CCWGG 1 cut(s) 139
EcoT38I GRGCYC 2 cut(s) 175, 468
FaeI CATG 2 cut(s) 302, 478
FaiI YATR 7 cut(s) 129, 203, 300, 326, 381, 399, 476
FatI CATG 2 cut(s) 298, 474
Fnu4HI GCNGC 1 cut(s) 418
FokI GGATG 2 cut(s) 250, 539
FriOI GRGCYC 2 cut(s) 175, 468
Fsp4HI GCNGC 1 cut(s) 418
GlaI GCGC 2 cut(s) 411, 535
GluI GCNGC 1 cut(s) 418
HaeII RGCGCY 1 cut(s) 413
HhaI GCGC 2 cut(s) 412, 536
Hin1II CATG 2 cut(s) 302, 478
Hin6I GCGC 2 cut(s) 410, 534
HinP1I GCGC 2 cut(s) 410, 534
HinfI GANTC 1 cut(s) 32
HphI GGTGA 3 cut(s) 86, 265, 323
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 3 cut(s) 37, 64, 501
Hpy188III TCNNGA 1 cut(s) 168
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 210, 549
HpyCH4V TGCA 5 cut(s) 17, 83, 293, 427, 478
HpyF3I CTNAG 3 cut(s) 181, 249, 413
HpySE526I ACGT 2 cut(s) 210, 549
Hsp92II CATG 2 cut(s) 302, 478
HspAI GCGC 2 cut(s) 410, 534
KpnI GGTACC 1 cut(s) 281
Kzo9I GATC 1 cut(s) 374
LmnI GCTCC 2 cut(s) 170, 250
LpnPI CCDG 9 cut(s) 39, 55, 90, 105, 126, 153, 354, 456, 464
Lsp1109I GCAGC 1 cut(s) 429
LweI GCATC 3 cut(s) 26, 175, 517
MaeII ACGT 2 cut(s) 210, 549
MaeIII GTNAC 2 cut(s) 352, 364
MalI GATC 1 cut(s) 376
MbiI CCGCTC 1 cut(s) 161
MboI GATC 1 cut(s) 374
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 175, 468
MluCI AATT 3 cut(s) 117, 221, 382
MnlI CCTC 3 cut(s) 46, 101, 443
MseI TTAA 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 85
MvaI CCWGG 1 cut(s) 141
NdeII GATC 1 cut(s) 374
NlaIII CATG 2 cut(s) 302, 478
NlaIV GGNNCC 1 cut(s) 279
PctI GAATGC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 419
Psp124BI GAGCTC 2 cut(s) 175, 468
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 279
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 2 cut(s) 279, 404
RsaNI GTAC 2 cut(s) 278, 403
SacI GAGCTC 2 cut(s) 175, 468
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 1 cut(s) 418
Sau3AI GATC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 2 cut(s) 175, 468
SfaNI GCATC 3 cut(s) 26, 175, 517
SfcI CTRYAG 1 cut(s) 27
Sse9I AATT 3 cut(s) 117, 221, 382
SsiI CCGC 1 cut(s) 159
SstI GAGCTC 2 cut(s) 175, 468
StyD4I CCNGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 213, 552
TaqI TCGA 2 cut(s) 386, 462
TaqII GACCGA 1 cut(s) 306
TasI AATT 3 cut(s) 117, 221, 382
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TseI GCWGC 1 cut(s) 417
TspDTI ATGAA 2 cut(s) 216, 313
TspGWI ACGGA 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.