AT3G20820

leucine-rich repeat family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012849
Physical Location & Seq
Forward (+)
7280792 .. 7282377
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20820.1

Sequence Viewer

Length: 1098 bp
ATGAATCTCAACGTCGTCGTTTTACTCCTACTCCTTCTAATCTCATCCGCCACGTGTTGTCCGCCGTCAGACCGCCGTGCACTTCTAGCTTTCCGATCAGCTCTTCACGAGCCTTACCTCGGCATTTTCAACTCATGGACAGGCCAAGACTGTTGCCACAACTGGTACGGTATTAGCTGCGACTCGCTCACTCACCGAGTCGCCGACATAAATCTCCGCGGCGAGTCAGAAGATCCAATCTTCGAACGAGCTCACCGAACCGGTTACATGACCGGACACATCTCCGCCTCGATATGTGAGCTCACTCGTCTCTCCGCCATTACAATCGCCGATTGGAAAGGTATCTCCGGCGAAATCCCTAAATGTATCACTCGTCTTCCTTTTCTCCGTACACTCGACTTAATCGGAAACCAAATCTCCGGTGGGATTCCATACGACATCGGAAGATTAAACCGGTTAGCTGTTTTAAACGTAGCCGATAACCGAATCTCCGGTTCAATTCCAAAATCATTAACCAATCTCTCTAGCTTAATGCATTTAGATCTCCGTAACAACTTAATCTCCGGTGTAATCCCGTCGGACGTCGGAAGATTAAAAATGCTCAGCCGTGCGTTATTATCCGGTAACCGAATAACCGGTCGGATCCCAGAATCATTAACCAATATCTACCGGTTAGCTGACGTGGATCTCTCCGGTAACCAACTCTACGGTACAATCCCACCGTCTCTAGGACGTATGTCGGTACTAGCCACACTTAACCTCGACGGAAACAAAATCTCCGGCGAGATACCTCAAACTCTGATGACGTCGTCGGTGATGAATCTGAATTTGAGCCGGAACTTGCTACAAGGGAAGATACCTGAAGGGTTTGGACCAAGGTCTTACTTCACAGTTCTTGATTTGTCGTATAATAATCTGAAAGGACCAATACCGAGATCGATCTCAGGTGCGTCGTTTATTGGTCATTTGGATCTTAGCCATAACCATCTCTGTGGGAGGATTCCGGTAGGTTCACCGTTTGATCATCTTGAAGCGGCGTCGTTTATGTTTAACGACTGTCTTTGTGGTAAACCTTTAAGAGCTTGCTTGAAAAATTGA

Protein Analysis

365

Amino Acids

39.86

Weight (kDa)

8.77

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 22 - 61 2.3e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 97 - 185 5.5e-09 Leucine-rich repeat region
LRR_8 PF13855 152 - 211 4.6e-08 Leucine rich repeat
LRR_8 PF13855 271 - 330 5.6e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20820 AT5G12940
fragaria_vesca FvH4_3g43270
malus_domestica MD03G1023300.v1.1 MD11G1028200.v1.1
prunus_persica Prupe.6G022400_v2.0.a1
pyrus_communis pycom03g01990 pycom11g02190
rosa_chinensis RchiOBHm_Chr5g0077331
rosa_laevigata RLG00000036686
rosa_multiflora Rmu_sc0000433.1_g000028
rosa_roxburghii Rroxscaffold_1G00004580
rosa_rugosa Rorug05G0453800
rosa_samantha Rh5AG509000 Rh5BG530300 Rh5CG554700 Rh5DG542600
rosa_wichuraiana Rw5G046840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 585, 809
AccII CGCG 1 cut(s) 219
AciI CCGC 8 cut(s) 48, 62, 73, 217, 219, 285, 315, 1034
AclWI GGATC 5 cut(s) 227, 637, 650, 693, 978
AcsI RAATTY 1 cut(s) 826
AcuI CTGAAG 1 cut(s) 882
AcvI CACGTG 1 cut(s) 54
AcyI GRCGYC 3 cut(s) 582, 806, 1037
AfaI GTAC 4 cut(s) 167, 391, 712, 744
AfiI CCNNNNNNNGG 2 cut(s) 119, 728
AflIII ACRYGT 1 cut(s) 53
AgeI ACCGGT 4 cut(s) 260, 453, 635, 669
AgsI TTSAA 4 cut(s) 130, 498, 1031, 1090
AjiI CACGTC 1 cut(s) 682
AluBI AGCT 9 cut(s) 89, 101, 177, 251, 301, 461, 528, 677, 1082
AluI AGCT 9 cut(s) 89, 101, 177, 251, 301, 461, 528, 677, 1082
Alw21I GWGCWC 3 cut(s) 82, 253, 303
Alw26I GTCTC 2 cut(s) 314, 729
Alw44I GTGCAC 1 cut(s) 78
AlwI GGATC 5 cut(s) 227, 637, 650, 693, 978
AoxI GGCC 1 cut(s) 142
ApaLI GTGCAC 1 cut(s) 78
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 826
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AsiGI ACCGGT 4 cut(s) 260, 453, 635, 669
AspS9I GGNCC 2 cut(s) 872, 923
AsuHPI GGTGA 4 cut(s) 185, 245, 826, 1005
AsuII TTCGAA 1 cut(s) 243
AvaII GGWCC 2 cut(s) 872, 923
BaeGI GKGCMC 1 cut(s) 82
BamHI GGATCC 1 cut(s) 642
BanII GRGCYC 2 cut(s) 253, 303
BauI CACGAG 1 cut(s) 107
BbrPI CACGTG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 3 cut(s) 82, 253, 303
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 993
BceAI ACGGC 3 cut(s) 49, 60, 591
BclI TGATCA 1 cut(s) 1021
BcoDI GTCTC 2 cut(s) 314, 729
BfaI CTAG 4 cut(s) 86, 525, 728, 746
BglII AGATCT 1 cut(s) 541
BisI GCNGC 3 cut(s) 178, 220, 1035
BlpI GCTNAGC 1 cut(s) 602
BlsI GCNGC 3 cut(s) 179, 221, 1036
Bme18I GGWCC 2 cut(s) 872, 923
BmgBI CACGTC 1 cut(s) 682
BmgT120I GGNCC 2 cut(s) 872, 923
BmiI GGNNCC 1 cut(s) 644
BoxI GACNNNNGTC 2 cut(s) 736, 877
BpiI GAAGAC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 243
Bsa29I ATCGAT 1 cut(s) 938
BsaAI YACGTR 1 cut(s) 54
BsaHI GRCGYC 3 cut(s) 582, 806, 1037
BsaJI CCNNGG 3 cut(s) 118, 217, 875
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 728
Bse118I RCCGGY 4 cut(s) 260, 453, 635, 669
Bse1I ACTGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 938
BseDI CCNNGG 3 cut(s) 118, 217, 875
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 119, 728
BseMII CTCAG 2 cut(s) 616, 957
BseNI ACTGG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 1 cut(s) 144
BshTI ACCGGT 4 cut(s) 260, 453, 635, 669
BshVI ATCGAT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 640
BsiHKAI GWGCWC 3 cut(s) 82, 253, 303
BslI CCNNNNNNNGG 2 cut(s) 119, 728
BsmAI GTCTC 2 cut(s) 314, 729
BsmBI CGTCTC 2 cut(s) 314, 729
BsnI GGCC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 243
Bsp1286I GDGCHC 3 cut(s) 82, 253, 303
Bsp143I GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
Bsp1720I GCTNAGC 1 cut(s) 602
BspACI CCGC 8 cut(s) 48, 62, 73, 217, 219, 285, 315, 1034
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 2 cut(s) 615, 956
BspDI ATCGAT 1 cut(s) 938
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 1 cut(s) 644
BspPI GGATC 5 cut(s) 227, 637, 650, 693, 978
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 243
BsrFI RCCGGY 4 cut(s) 260, 453, 635, 669
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 4 cut(s) 260, 453, 635, 669
BssECI CCNNGG 3 cut(s) 118, 217, 875
BssMI GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
BssNI GRCGYC 3 cut(s) 582, 806, 1037
BssSI CACGAG 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 875
Bst2BI CACGAG 1 cut(s) 107
Bst4CI ACNGT 7 cut(s) 152, 170, 710, 723, 892, 1017, 1058
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 3 cut(s) 582, 806, 1037
BstBAI YACGTR 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 1084
BstDEI CTNAG 3 cut(s) 602, 943, 974
BstDSI CCRYGG 1 cut(s) 217
BstEII GGTNACC 2 cut(s) 623, 695
BstF5I GGATG 1 cut(s) 44
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 9 cut(s) 98, 235, 544, 645, 688, 938, 942, 973, 1024
BstMAI GTCTC 2 cut(s) 314, 729
BstMBI GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstPAI GACNNNNGTC 2 cut(s) 736, 877
BstPI GGTNACC 2 cut(s) 623, 695
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 368
BstX2I RGATCY 5 cut(s) 232, 541, 642, 685, 970
BstXI CCANNNNNNTGG 1 cut(s) 992
BstYI RGATCY 5 cut(s) 232, 541, 642, 685, 970
Bsu15I ATCGAT 1 cut(s) 938
BsuRI GGCC 1 cut(s) 144
BsuTUI ATCGAT 1 cut(s) 938
BtgI CCRYGG 1 cut(s) 217
BtrI CACGTC 1 cut(s) 682
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 1 cut(s) 1084
Cfr10I RCCGGY 4 cut(s) 260, 453, 635, 669
Cfr13I GGNCC 2 cut(s) 872, 923
Cfr42I CCGCGG 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 938
CseI GACGC 2 cut(s) 939, 1026
Csp6I GTAC 4 cut(s) 166, 390, 711, 743
CspAI ACCGGT 4 cut(s) 260, 453, 635, 669
CviAII CATG 2 cut(s) 135, 268
CviQI GTAC 4 cut(s) 166, 390, 711, 743
DdeI CTNAG 3 cut(s) 602, 943, 974
DpnI GATC 9 cut(s) 97, 234, 543, 644, 687, 937, 941, 972, 1023
DpnII GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
DraI TTTAAA 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 4 cut(s) 37, 51, 274, 304
Ecl136II GAGCTC 2 cut(s) 251, 301
Eco130I CCWWGG 1 cut(s) 875
Eco24I GRGCYC 2 cut(s) 253, 303
Eco47I GGWCC 2 cut(s) 872, 923
Eco53kI GAGCTC 2 cut(s) 251, 301
Eco57I CTGAAG 1 cut(s) 882
Eco72I CACGTG 1 cut(s) 54
Eco91I GGTNACC 2 cut(s) 623, 695
EcoICRI GAGCTC 2 cut(s) 251, 301
EcoO65I GGTNACC 2 cut(s) 623, 695
EcoT14I CCWWGG 1 cut(s) 875
EcoT22I ATGCAT 1 cut(s) 537
EcoT38I GRGCYC 2 cut(s) 253, 303
ErhI CCWWGG 1 cut(s) 875
Esp3I CGTCTC 2 cut(s) 314, 729
FaeI CATG 2 cut(s) 138, 271
FaiI YATR 9 cut(s) 136, 209, 269, 295, 433, 737, 909, 981, 1046
FatI CATG 2 cut(s) 134, 267
FbaI TGATCA 1 cut(s) 1021
Fnu4HI GCNGC 3 cut(s) 178, 220, 1035
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 2 cut(s) 253, 303
Fsp4HI GCNGC 3 cut(s) 178, 220, 1035
FspBI CTAG 4 cut(s) 86, 525, 728, 746
GluI GCNGC 3 cut(s) 178, 220, 1035
HaeIII GGCC 1 cut(s) 144
HgaI GACGC 2 cut(s) 939, 1026
Hin1I GRCGYC 3 cut(s) 582, 806, 1037
Hin1II CATG 2 cut(s) 138, 271
HinfI GANTC 9 cut(s) 4, 182, 198, 224, 427, 486, 650, 820, 1000
HphI GGTGA 4 cut(s) 185, 245, 826, 1005
Hpy166II GTNNAC 4 cut(s) 80, 392, 1013, 1070
Hpy188III TCNNGA 3 cut(s) 107, 896, 1028
Hpy8I GTNNAC 4 cut(s) 80, 392, 1013, 1070
Hpy99I CGWCG 9 cut(s) 17, 20, 580, 587, 767, 811, 814, 955, 1042
HpyAV CCTTC 2 cut(s) 44, 857
HpyCH4III ACNGT 7 cut(s) 152, 170, 710, 723, 892, 1017, 1058
HpyCH4IV ACGT 7 cut(s) 12, 53, 471, 582, 681, 733, 806
HpyCH4V TGCA 2 cut(s) 80, 535
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 602, 943, 974
HpySE526I ACGT 7 cut(s) 12, 53, 471, 582, 681, 733, 806
Hsp92I GRCGYC 3 cut(s) 582, 806, 1037
Hsp92II CATG 2 cut(s) 138, 271
Ksp22I TGATCA 1 cut(s) 1021
KspI CCGCGG 1 cut(s) 220
Kzo9I GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
LguI GCTCTTC 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 164
MaeI CTAG 4 cut(s) 86, 525, 728, 746
MaeII ACGT 7 cut(s) 12, 53, 471, 582, 681, 733, 806
MaeIII GTNAC 4 cut(s) 263, 548, 623, 695
MalI GATC 9 cut(s) 97, 234, 543, 644, 687, 937, 941, 972, 1023
MboI GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
MboII GAAGA 7 cut(s) 95, 232, 242, 368, 456, 600, 865
MflI RGATCY 5 cut(s) 232, 541, 642, 685, 970
MhlI GDGCHC 3 cut(s) 82, 253, 303
MluCI AATT 3 cut(s) 498, 826, 1093
MlyI GAGTC 3 cut(s) 176, 207, 233
MmeI TCCRAC 3 cut(s) 558, 565, 620
MnlI CCTC 5 cut(s) 128, 298, 770, 801, 990
Mph1103I ATGCAT 1 cut(s) 537
MslI CAYNNNNRTG 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 219
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
NlaIII CATG 2 cut(s) 138, 271
NlaIV GGNNCC 1 cut(s) 644
NmeAIII GCCGAG 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 537
NspV TTCGAA 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PfeI GAWTC 6 cut(s) 4, 427, 486, 650, 820, 1000
PflFI GACNNNGTC 1 cut(s) 808
PinAI ACCGGT 4 cut(s) 260, 453, 635, 669
PkrI GCNGC 3 cut(s) 179, 221, 1036
PleI GAGTC 3 cut(s) 176, 206, 232
PmaCI CACGTG 1 cut(s) 54
PmlI CACGTG 1 cut(s) 54
PpsI GAGTC 3 cut(s) 176, 206, 232
Ppu21I YACGTR 1 cut(s) 54
PshAI GACNNNNGTC 2 cut(s) 736, 877
Psp124BI GAGCTC 2 cut(s) 253, 303
PspCI CACGTG 1 cut(s) 54
PspEI GGTNACC 2 cut(s) 623, 695
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 2 cut(s) 872, 923
PsuI RGATCY 5 cut(s) 232, 541, 642, 685, 970
PsyI GACNNNGTC 1 cut(s) 808
RsaI GTAC 4 cut(s) 167, 391, 712, 744
RsaNI GTAC 4 cut(s) 166, 390, 711, 743
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 2 cut(s) 253, 303
SacII CCGCGG 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 108
SatI GCNGC 3 cut(s) 178, 220, 1035
Sau3AI GATC 9 cut(s) 95, 232, 541, 642, 685, 935, 939, 970, 1021
Sau96I GGNCC 2 cut(s) 872, 923
SchI GAGTC 3 cut(s) 176, 207, 233
SduI GDGCHC 3 cut(s) 82, 253, 303
Sfr303I CCGCGG 1 cut(s) 220
SfuI TTCGAA 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 220
SinI GGWCC 2 cut(s) 872, 923
SmiMI CAYNNNNRTG 1 cut(s) 990
Sse9I AATT 3 cut(s) 498, 826, 1093
SsiI CCGC 8 cut(s) 48, 62, 73, 217, 219, 285, 315, 1034
SspMI CTAG 4 cut(s) 86, 525, 728, 746
SstI GAGCTC 2 cut(s) 253, 303
StyI CCWWGG 1 cut(s) 875
TaaI ACNGT 7 cut(s) 152, 170, 710, 723, 892, 1017, 1058
TaiI ACGT 7 cut(s) 15, 56, 474, 585, 684, 736, 809
TaqI TCGA 5 cut(s) 243, 290, 396, 762, 938
TasI AATT 3 cut(s) 498, 826, 1093
TauI GCSGC 2 cut(s) 222, 1037
TfiI GAWTC 6 cut(s) 4, 427, 486, 650, 820, 1000
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 2 cut(s) 17, 833
TspGWI ACGGA 3 cut(s) 377, 536, 780
Tth111I GACNNNGTC 1 cut(s) 808
VneI GTGCAC 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 872, 923
XapI RAATTY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 419
XspI CTAG 4 cut(s) 86, 525, 728, 746
ZraI GACGTC 2 cut(s) 583, 807
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.