Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012849

Physical Location & Seq

Genomic Coordinates Reverse (-)

83378149 .. 83382631

Gene Structure 4483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGGGACGAAGAAGAAGAAGAGATAGAGATGAATAGAGAGAATGAGGGTGTCGGGCTCGTGGCTGTGCTCTTCTCGTTGTTACAGTCCCTGCAGTATTACTATTACTCAGATCGAAATCCTGGGCAAGAATTCAATTCGATCATTCTGAAGACAGATCATAGGTTTCTTGGCATTTTTCAATATTGGCTCACCGGACCACTCCCGACCGACATCGGCCGGCTCCAGAGGCTCACCGTCCTCAACGTCGCCGACAACCTCATCTCCGGTACAATCCCAGAGTCCCTCACGAAAATCTCAACCCTCATGCACCTCGACCTCCGCAACAACAAAATTTCCGGCAAGTTGCCGGCAGATTTCGGCCAGCTCGGCATGCTCAGCCGAGCTTTGCTCAGCCGAAACCTGCTTTCCGGTTCCATTCCCGCCTCCATCTCTCAAATCTACCGTCTGGCCGATCTTGATCTCTCTCTCAACCAACTCTCCGGTCCGATTCCGGCCTCTCTAGGCAAAATGGCAGTCCTCGCAACCCTGAATCTCGACTGTAACAACATCACGGGAACTATTCCCCCGAGTTTGATCGTCTCAGCTATAAGCAACTTGAACTTGAGCCGAAACTCCCTCCAGGGTTTTATTCCAAACGTGTTTGGGCCGAGATCTTACTTCACTGTGATAGACCTGTCGTACAATAGGTTTAGGGGTAATATTCCGTCGACCCTATCGTTGGCTTCTTACATCGGTCACTTGGATTTGAGCCACAACCACCTCTGTGGAAAGATTCCGGTCGGTTCGCCGTTCGATCACCTTGAAGCATCGTCTTTTAGTTACAACGATTGCTTATGTGGGAAGCCACTAAGAGCTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

288

Amino Acids

31.63

Weight (kDa)

6.06

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	55 - 128	7.2e-07	Leucine-rich repeat region
LRR_8	PF13855	77 - 136	5.8e-07	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20820 AT5G12940
fragaria_vesca	FvH4_3g43270
malus_domestica	MD03G1023300.v1.1 MD11G1028200.v1.1
prunus_persica	Prupe.6G022400_v2.0.a1
pyrus_communis	pycom03g01990 pycom11g02190
rosa_chinensis	RchiOBHm_Chr5g0077331
rosa_laevigata	RLG00000036686
rosa_multiflora	Rmu_sc0000433.1_g000028
rosa_roxburghii	Rroxscaffold_1G00004580
rosa_rugosa	Rorug05G0453800
rosa_samantha	Rh5AG509000 Rh5BG530300 Rh5CG554700 Rh5DG542600
rosa_wichuraiana	Rw5G046840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	2 cut(s)	322, 423
AcoI	YGGCCR	3 cut(s)	217, 361, 450
AcsI	RAATTY	2 cut(s)	131, 333
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	2 cut(s)	271, 683
AfiI	CCNNNNNNNGG	1 cut(s)	721
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	136, 182, 601, 806
AjnI	CCWGG	2 cut(s)	121, 621
AleI	CACNNNNGTG	1 cut(s)	765
AluBI	AGCT	4 cut(s)	367, 386, 587, 857
AluI	AGCT	4 cut(s)	367, 386, 587, 857
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	586
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	217, 361, 450, 495, 647
ApoI	RAATTY	2 cut(s)	131, 333
ArsI	GACNNNNNNTTYG	4 cut(s)	430, 462, 501, 533
AspS9I	GGNCC	3 cut(s)	197, 485, 647
AsuHPI	GGTGA	3 cut(s)	184, 226, 791
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	197, 485
BanII	GRGCYC	1 cut(s)	60
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	72
BccI	CCATC	1 cut(s)	437
BceAI	ACGGC	1 cut(s)	775
BciT130I	CCWGG	2 cut(s)	123, 623
BcoDI	GTCTC	1 cut(s)	586
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	92
BfuAI	ACCTGC	1 cut(s)	411
BglI	GCCNNNNNGGC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	653
BlpI	GCTNAGC	2 cut(s)	377, 392
Bme1390I	CCNGG	2 cut(s)	123, 623
Bme18I	GGWCC	2 cut(s)	197, 485
BmeT110I	CYCGRG	1 cut(s)	568
BmgT120I	GGNCC	3 cut(s)	197, 485, 647
BmiI	GGNNCC	2 cut(s)	224, 415
BmrFI	CCNGG	2 cut(s)	123, 623
BmsI	GCATC	1 cut(s)	818
BpiI	GAAGAC	1 cut(s)	158
BplI	GAGNNNNNCTC	2 cut(s)	375, 407
BpmI	CTGGAG	2 cut(s)	209, 605
Bpu1102I	GCTNAGC	2 cut(s)	377, 392
BpuEI	CTTGAG	1 cut(s)	625
BsaBI	GATNNNNATC	2 cut(s)	117, 459
BsaJI	CCNNGG	2 cut(s)	122, 622
BsaWI	WCCGGW	5 cut(s)	194, 266, 410, 482, 778
BsaXI	ACNNNNNCTCC	4 cut(s)	248, 278, 464, 494
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	2 cut(s)	219, 349
Bse8I	GATNNNNATC	2 cut(s)	117, 459
BseBI	CCWGG	2 cut(s)	123, 623
BseDI	CCNNGG	2 cut(s)	122, 622
BseJI	GATNNNNATC	2 cut(s)	117, 459
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMII	CTCAG	4 cut(s)	123, 391, 406, 597
BseX3I	CGGCCG	1 cut(s)	217
Bsh1285I	CGRYCG	3 cut(s)	210, 220, 783
BshFI	GGCC	5 cut(s)	219, 363, 452, 497, 649
BsiEI	CGRYCG	3 cut(s)	210, 220, 783
BsiHKAI	GWGCWC	1 cut(s)	72
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	9 cut(s)	195, 220, 267, 339, 350, 411, 483, 494, 779
BslFI	GGGAC	3 cut(s)	20, 73, 268
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	586
BsmBI	CGTCTC	1 cut(s)	586
BsmFI	GGGAC	3 cut(s)	20, 73, 268
BsnI	GGCC	5 cut(s)	219, 363, 452, 497, 649
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	60, 72
Bsp143I	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
Bsp1720I	GCTNAGC	2 cut(s)	377, 392
BspACI	CCGC	2 cut(s)	322, 423
BspANI	GGCC	5 cut(s)	219, 363, 452, 497, 649
BspCNI	CTCAG	4 cut(s)	122, 390, 405, 596
BspLI	GGNNCC	2 cut(s)	224, 415
BspMAI	CTGCAG	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	411
BspQI	GCTCTTC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	219, 349
BssAI	RCCGGY	2 cut(s)	219, 349
BssECI	CCNNGG	2 cut(s)	122, 622
BssMI	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
BssSI	CACGAG	1 cut(s)	59
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	2 cut(s)	123, 623
Bst4CI	ACNGT	5 cut(s)	87, 238, 446, 542, 667
Bst6I	CTCTTC	2 cut(s)	15, 77
BstC8I	GCNNGC	5 cut(s)	221, 351, 365, 374, 859
BstDEI	CTNAG	5 cut(s)	109, 377, 392, 583, 851
BstKTI	GATC	8 cut(s)	115, 144, 160, 457, 463, 579, 656, 799
BstMAI	GTCTC	1 cut(s)	586
BstMBI	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
BstMCI	CGRYCG	3 cut(s)	210, 220, 783
BstMWI	GCNNNNNNNGC	5 cut(s)	229, 369, 373, 378, 521
BstNI	CCWGG	2 cut(s)	123, 623
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	121, 621
BstSFI	CTRYAG	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	653
BstXI	CCANNNNNNTGG	1 cut(s)	767
BstYI	RGATCY	1 cut(s)	653
BstZI	CGGCCG	1 cut(s)	217
BsuRI	GGCC	5 cut(s)	219, 363, 452, 497, 649
BtsIMutI	CAGTG	1 cut(s)	663
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	5 cut(s)	221, 351, 365, 374, 859
CaiI	CAGNNNCTG	1 cut(s)	91
Cfr10I	RCCGGY	2 cut(s)	219, 349
Cfr13I	GGNCC	3 cut(s)	197, 485, 647
CpoI	CGGWCCG	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	270, 682
CspI	CGGWCCG	1 cut(s)	485
CviAII	CATG	2 cut(s)	307, 373
CviQI	GTAC	2 cut(s)	270, 682
DdeI	CTNAG	5 cut(s)	109, 377, 392, 583, 851
DpnI	GATC	8 cut(s)	114, 143, 159, 456, 462, 578, 655, 798
DpnII	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
EaeI	YGGCCR	3 cut(s)	217, 361, 450
EagI	CGGCCG	1 cut(s)	217
Eam1104I	CTCTTC	2 cut(s)	15, 77
EarI	CTCTTC	2 cut(s)	15, 77
EclXI	CGGCCG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	197, 485
Eco52I	CGGCCG	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	170
Eco88I	CYCGRG	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	121, 621
EcoT38I	GRGCYC	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	586
FaeI	CATG	2 cut(s)	310, 376
FaiI	YATR	5 cut(s)	162, 308, 374, 590, 838
FaqI	GGGAC	3 cut(s)	20, 73, 268
FatI	CATG	2 cut(s)	306, 372
FauI	CCCGC	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	710
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	503
GsuI	CTGGAG	2 cut(s)	209, 605
HaeIII	GGCC	5 cut(s)	219, 363, 452, 497, 649
HapII	CCGG	9 cut(s)	195, 220, 267, 339, 350, 411, 483, 494, 779
Hin1II	CATG	2 cut(s)	310, 376
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HinfI	GANTC	4 cut(s)	281, 490, 532, 775
HpaII	CCGG	9 cut(s)	195, 220, 267, 339, 350, 411, 483, 494, 779
HphI	GGTGA	3 cut(s)	184, 226, 791
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	3 cut(s)	112, 150, 489
Hpy188III	TCNNGA	5 cut(s)	205, 226, 289, 458, 536
Hpy8I	GTNNAC	1 cut(s)	711
Hpy99I	CGWCG	2 cut(s)	251, 712
HpyCH4III	ACNGT	5 cut(s)	87, 238, 446, 542, 667
HpyCH4IV	ACGT	2 cut(s)	246, 639
HpyCH4V	TGCA	2 cut(s)	94, 310
HpyF10VI	GCNNNNNNNGC	5 cut(s)	229, 369, 373, 378, 521
HpyF3I	CTNAG	5 cut(s)	109, 377, 392, 583, 851
HpySE526I	ACGT	2 cut(s)	246, 639
Hsp92II	CATG	2 cut(s)	310, 376
KroI	GCCGGC	2 cut(s)	219, 349
KroNI	GCCGGC	2 cut(s)	221, 351
Kzo9I	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	1 cut(s)	228
LweI	GCATC	1 cut(s)	818
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	2 cut(s)	246, 639
MaeIII	GTNAC	4 cut(s)	81, 542, 737, 821
MalI	GATC	8 cut(s)	114, 143, 159, 456, 462, 578, 655, 798
MboI	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
MboII	GAAGA	6 cut(s)	23, 26, 29, 32, 64, 163
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	2 cut(s)	60, 72
MluCI	AATT	3 cut(s)	131, 136, 333
MlyI	GAGTC	1 cut(s)	290
MroNI	GCCGGC	2 cut(s)	219, 349
MslI	CAYNNNNRTG	1 cut(s)	765
MspI	CCGG	9 cut(s)	195, 220, 267, 339, 350, 411, 483, 494, 779
MspR9I	CCNGG	2 cut(s)	123, 623
MvaI	CCWGG	2 cut(s)	123, 623
MwoI	GCNNNNNNNGC	5 cut(s)	229, 369, 373, 378, 521
NaeI	GCCGGC	2 cut(s)	221, 351
NdeII	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
NgoMIV	GCCGGC	2 cut(s)	219, 349
NlaIII	CATG	2 cut(s)	310, 376
NlaIV	GGNNCC	2 cut(s)	224, 415
NmeAIII	GCCGAG	3 cut(s)	348, 407, 675
NmuCI	GTSAC	1 cut(s)	737
NspI	RCATGY	1 cut(s)	376
OliI	CACNNNNGTG	1 cut(s)	765
PaeI	GCATGC	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	77
PcsI	WCGNNNNNNNCGW	1 cut(s)	716
PdiI	GCCGGC	2 cut(s)	221, 351
PfeI	GAWTC	3 cut(s)	490, 532, 775
PleI	GAGTC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	121, 621
PspGI	CCWGG	2 cut(s)	121, 621
PspN4I	GGNNCC	2 cut(s)	224, 415
PspPI	GGNCC	3 cut(s)	197, 485, 647
PstI	CTGCAG	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	2 cut(s)	271, 683
RsaNI	GTAC	2 cut(s)	270, 682
RseI	CAYNNNNRTG	1 cut(s)	765
Rsr2I	CGGWCCG	1 cut(s)	485
RsrII	CGGWCCG	1 cut(s)	485
SalI	GTCGAC	1 cut(s)	709
SapI	GCTCTTC	1 cut(s)	77
Sau3AI	GATC	8 cut(s)	112, 141, 157, 454, 460, 576, 653, 796
Sau96I	GGNCC	3 cut(s)	197, 485, 647
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	123, 623
SduI	GDGCHC	2 cut(s)	60, 72
SfaNI	GCATC	1 cut(s)	818
SfcI	CTRYAG	1 cut(s)	92
SinI	GGWCC	2 cut(s)	197, 485
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
SphI	GCATGC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	131, 136, 333
SsiI	CCGC	2 cut(s)	322, 423
SspI	AATATT	2 cut(s)	185, 703
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	121, 621
TaaI	ACNGT	5 cut(s)	87, 238, 446, 542, 667
TaiI	ACGT	2 cut(s)	249, 642
TaqI	TCGA	6 cut(s)	115, 140, 315, 537, 710, 795
TaqII	GACCGA	2 cut(s)	224, 725
TasI	AATT	3 cut(s)	131, 136, 333
TfiI	GAWTC	3 cut(s)	490, 532, 775
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	2 cut(s)	197, 485
XapI	RAATTY	2 cut(s)	131, 333
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	710
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.