Rh5DG542600

DNA-damage-repair toleration protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
83480874 .. 83482770
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG542600.1

Sequence Viewer

Length: 1095 bp
ATGAGAACACTTCTCGTATTTGTTGCAGTATTGTTGGCTGCTGGTACTTGGGCCGTCCGGGCTTGTCCTCCTTCAGACCGGGCGGCCCTGCTCGCTTTCAAAGCGAGCCTCCATGAGCCCTACTTGGGAATTTTCAAATCATGGACCGGCGCCGACTGCTGCCACAAATGGTACGGTATCAGCTGCGACCAGGAGACCCGCCGTGTCGCCGACATAAATCTCCGGGGTGAGTCCGAGGACCCGATTTTCGAACGTGCCAAAAGAACCGGCTACATGACCGGGACGATCTCGCCGGCCATCTGCCGCCTGACCCGCCTCTCCAGCATCACCATCGCCGACTGGAAGGGAATCTCCGGCGAGATTCCCCGGTGCATCTCCAACTTACCCTTCCTTCGGATCCTCGACCTCATCGGAAACAAGCTCACTGGACCGCTTCCGTCCGACATTGGCCGGCTCCAGAGGCTCACCGTCCTCAACGTCGCCGACAACCTCATCTCAGGCACAATCCCAGAGTCCCTCACGAAAATCTCAACCCTCATGCACCTCGACCTCCGCAACAACAAAATTTCCGGCAAGTTGCCGGCAGATTTCGGCCGGCTCGGCATGCTCAGCCGCGCTTTGCTCAGCCGAAATCTGCTTTCCGGTTCCATTCCCGCCTCCATCTCTCAAATCTACCGTCTGGCCGATCTTGATCTCTCTCTCAACCAACTCTCCGGTCCGATTCCGGCCTCTCTAGGCAAAATGGCCGTCCTCGCAACCCTAAATCTCGACTGTAACAACATCACCGGAACTATTCCCCCGAGTTTGATTGTCTCAGCTATAAGCAACTTGAACTTGAGCCGAAACTCCCTACAGGGTTTTATTCCAAACGTGTTTGGGCCGAGATCCTACTTCACTATGATCGACCTGTCGTACAATAGGTTCAGGGGTAATATTCCGTCGACCCTATCGTCGGCTTCTTACATCGGTCACTTGGATTTGAGCCACAACCACCTCTGTGGAAAGATTCCGGTGGGTTCGCCGTTCGATCACCTTGAAGCATCGTCTTTTAGTTACAACGATTGCTTATGTGGGAAGCCACTAAGAGCTTGCTAA

Protein Analysis

364

Amino Acids

39.55

Weight (kDa)

9.16

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 24 - 63 7.1e-12 Leucine rich repeat N-terminal domain
LRR_8 PF13855 154 - 213 1.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20820 AT5G12940
fragaria_vesca FvH4_3g43270
malus_domestica MD03G1023300.v1.1 MD11G1028200.v1.1
prunus_persica Prupe.6G022400_v2.0.a1
pyrus_communis pycom03g01990 pycom11g02190
rosa_chinensis RchiOBHm_Chr5g0077331
rosa_laevigata RLG00000036686
rosa_multiflora Rmu_sc0000433.1_g000028
rosa_roxburghii Rroxscaffold_1G00004580
rosa_rugosa Rorug05G0453800
rosa_samantha Rh5AG509000 Rh5BG530300 Rh5CG554700 Rh5DG542600
rosa_wichuraiana Rw5G046840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 941
AccII CGCG 1 cut(s) 615
AciI CCGC 8 cut(s) 83, 199, 304, 313, 431, 553, 613, 654
AclWI GGATC 3 cut(s) 391, 404, 879
AcoI YGGCCR 5 cut(s) 294, 448, 592, 681, 744
AcsI RAATTY 2 cut(s) 129, 564
AcuI CTGAAG 1 cut(s) 57
AcyI GRCGYC 1 cut(s) 150
AfaI GTAC 3 cut(s) 46, 173, 914
AfiI CCNNNNNNNGG 3 cut(s) 125, 393, 952
AflIII ACRYGT 1 cut(s) 870
AgsI TTSAA 4 cut(s) 100, 136, 832, 1037
AjnI CCWGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AleI CACNNNNGTG 1 cut(s) 996
AluBI AGCT 4 cut(s) 183, 421, 818, 1088
AluI AGCT 4 cut(s) 183, 421, 818, 1088
Alw26I GTCTC 2 cut(s) 188, 817
AlwI GGATC 3 cut(s) 391, 404, 879
Ama87I CYCGRG 1 cut(s) 799
AoxI GGCC 9 cut(s) 51, 84, 294, 448, 592, 681, 726, 744, 878
ApeKI GCWGC 3 cut(s) 38, 159, 183
ApoI RAATTY 2 cut(s) 129, 564
ArsI GACNNNNNNTTYG 6 cut(s) 230, 262, 661, 693, 732, 764
AspLEI GCGC 2 cut(s) 152, 617
AspS9I GGNCC 7 cut(s) 51, 85, 144, 238, 428, 716, 878
AsuC2I CCSGG 5 cut(s) 59, 80, 224, 280, 367
AsuHPI GGTGA 5 cut(s) 239, 319, 457, 775, 1022
AsuII TTCGAA 1 cut(s) 249
AvaI CYCGRG 1 cut(s) 799
AvaII GGWCC 4 cut(s) 144, 238, 428, 716
BamHI GGATCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 25, 146, 170
BccI CCATC 3 cut(s) 305, 338, 668
BceAI ACGGC 4 cut(s) 38, 186, 731, 1006
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 5 cut(s) 59, 80, 224, 280, 367
BcoDI GTCTC 2 cut(s) 188, 817
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 1 cut(s) 851
BfoI RGCGCY 1 cut(s) 153
BglI GCCNNNNNGGC 2 cut(s) 59, 600
BisI GCNGC 6 cut(s) 39, 84, 160, 184, 304, 613
BlpI GCTNAGC 2 cut(s) 608, 623
BlsI GCNGC 6 cut(s) 40, 85, 161, 185, 305, 614
Bme1390I CCNGG 6 cut(s) 59, 80, 191, 224, 280, 367
Bme18I GGWCC 4 cut(s) 144, 238, 428, 716
BmeT110I CYCGRG 1 cut(s) 799
BmgT120I GGNCC 7 cut(s) 51, 85, 144, 238, 428, 716, 878
BmiI GGNNCC 5 cut(s) 151, 240, 398, 455, 646
BmrFI CCNGG 6 cut(s) 59, 80, 191, 224, 280, 367
BmsI GCATC 3 cut(s) 333, 381, 1049
BpmI CTGGAG 2 cut(s) 304, 440
Bpu1102I GCTNAGC 2 cut(s) 608, 623
Bpu14I TTCGAA 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 856
BpuMI CCSGG 5 cut(s) 59, 80, 224, 280, 367
BsaBI GATNNNNATC 1 cut(s) 690
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 223, 234, 365
BsaWI WCCGGW 4 cut(s) 641, 713, 785, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 393, 952
Bse118I RCCGGY 6 cut(s) 146, 266, 292, 450, 580, 594
Bse1I ACTGG 2 cut(s) 344, 430
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 3 cut(s) 223, 234, 365
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 3 cut(s) 125, 393, 952
BseMII CTCAG 4 cut(s) 510, 622, 637, 828
BseNI ACTGG 2 cut(s) 344, 430
BseX3I CGGCCG 1 cut(s) 592
BseXI GCAGC 3 cut(s) 25, 146, 170
Bsh1236I CGCG 1 cut(s) 615
Bsh1285I CGRYCG 1 cut(s) 595
BshFI GGCC 9 cut(s) 53, 86, 296, 450, 594, 683, 728, 746, 880
BshNI GGYRCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 799
BslFI GGGAC 2 cut(s) 295, 499
BslI CCNNNNNNNGG 3 cut(s) 125, 393, 952
BsmAI GTCTC 2 cut(s) 188, 817
BsmFI GGGAC 2 cut(s) 295, 499
BsnI GGCC 9 cut(s) 53, 86, 296, 450, 594, 683, 728, 746, 880
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
Bsp1720I GCTNAGC 2 cut(s) 608, 623
BspACI CCGC 8 cut(s) 83, 199, 304, 313, 431, 553, 613, 654
BspANI GGCC 9 cut(s) 53, 86, 296, 450, 594, 683, 728, 746, 880
BspCNI CTCAG 4 cut(s) 509, 621, 636, 827
BspFNI CGCG 1 cut(s) 615
BspLI GGNNCC 5 cut(s) 151, 240, 398, 455, 646
BspPI GGATC 3 cut(s) 391, 404, 879
BspT104I TTCGAA 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 188
BsrFI RCCGGY 6 cut(s) 146, 266, 292, 450, 580, 594
BsrI ACTGG 2 cut(s) 344, 430
BssAI RCCGGY 6 cut(s) 146, 266, 292, 450, 580, 594
BssECI CCNNGG 3 cut(s) 223, 234, 365
BssMI GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
BssNI GRCGYC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 4 cut(s) 176, 469, 677, 773
BstACI GRCGYC 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 8 cut(s) 93, 106, 294, 452, 582, 596, 605, 1090
BstDEI CTNAG 5 cut(s) 496, 608, 623, 814, 1082
BstFNI CGCG 1 cut(s) 615
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 2 cut(s) 152, 617
BstKTI GATC 7 cut(s) 288, 399, 688, 694, 887, 903, 1030
BstMAI GTCTC 2 cut(s) 188, 817
BstMBI GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
BstMCI CGRYCG 1 cut(s) 595
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 6 cut(s) 57, 78, 189, 222, 278, 365
BstSFI CTRYAG 1 cut(s) 851
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 3 cut(s) 25, 146, 170
BstX2I RGATCY 2 cut(s) 396, 884
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 2 cut(s) 396, 884
BstZI CGGCCG 1 cut(s) 592
BsuRI GGCC 9 cut(s) 53, 86, 296, 450, 594, 683, 728, 746, 880
BtgZI GCGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 8 cut(s) 93, 106, 294, 452, 582, 596, 605, 1090
CfoI GCGC 2 cut(s) 152, 617
Cfr10I RCCGGY 6 cut(s) 146, 266, 292, 450, 580, 594
Cfr13I GGNCC 7 cut(s) 51, 85, 144, 238, 428, 716, 878
CpoI CGGWCCG 1 cut(s) 716
Csp6I GTAC 3 cut(s) 45, 172, 913
CspI CGGWCCG 1 cut(s) 716
CviAII CATG 5 cut(s) 113, 141, 274, 538, 604
CviQI GTAC 3 cut(s) 45, 172, 913
DdeI CTNAG 5 cut(s) 496, 608, 623, 814, 1082
DinI GGCGCC 1 cut(s) 151
DpnI GATC 7 cut(s) 287, 398, 687, 693, 886, 902, 1029
DpnII GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
DrdI GACNNNNNNGTC 1 cut(s) 949
DseDI GACNNNNNNGTC 1 cut(s) 949
EaeI YGGCCR 5 cut(s) 294, 448, 592, 681, 744
EagI CGGCCG 1 cut(s) 592
EclXI CGGCCG 1 cut(s) 592
Eco24I GRGCYC 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 4 cut(s) 144, 238, 428, 716
Eco52I CGGCCG 1 cut(s) 592
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 120
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
FaeI CATG 5 cut(s) 116, 144, 277, 541, 607
FaiI YATR 9 cut(s) 114, 142, 215, 275, 539, 605, 821, 899, 1069
FaqI GGGAC 2 cut(s) 295, 499
FatI CATG 5 cut(s) 112, 140, 273, 537, 603
FauI CCCGC 3 cut(s) 206, 320, 661
FblI GTMKAC 1 cut(s) 941
Fnu4HI GCNGC 6 cut(s) 39, 84, 160, 184, 304, 613
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 39, 84, 160, 184, 304, 613
FspBI CTAG 1 cut(s) 734
GlaI GCGC 2 cut(s) 151, 616
GluI GCNGC 6 cut(s) 39, 84, 160, 184, 304, 613
GsuI CTGGAG 2 cut(s) 304, 440
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 9 cut(s) 53, 86, 296, 450, 594, 683, 728, 746, 880
HhaI GCGC 2 cut(s) 152, 617
Hin1I GRCGYC 1 cut(s) 150
Hin1II CATG 5 cut(s) 116, 144, 277, 541, 607
Hin6I GCGC 2 cut(s) 150, 615
HinP1I GCGC 2 cut(s) 150, 615
HincII GTYRAC 1 cut(s) 942
HindII GTYRAC 1 cut(s) 942
HinfI GANTC 6 cut(s) 230, 348, 361, 512, 721, 1006
HphI GGTGA 5 cut(s) 239, 319, 457, 775, 1022
Hpy166II GTNNAC 1 cut(s) 942
Hpy188I TCNGA 6 cut(s) 76, 235, 396, 413, 442, 720
Hpy188III TCNNGA 4 cut(s) 457, 520, 689, 767
Hpy8I GTNNAC 1 cut(s) 942
Hpy99I CGWCG 3 cut(s) 482, 943, 955
HpyAV CCTTC 4 cut(s) 81, 337, 397, 401
HpyCH4III ACNGT 4 cut(s) 176, 469, 677, 773
HpyCH4IV ACGT 3 cut(s) 253, 477, 870
HpyCH4V TGCA 3 cut(s) 26, 372, 541
HpyF3I CTNAG 5 cut(s) 496, 608, 623, 814, 1082
HpySE526I ACGT 3 cut(s) 253, 477, 870
Hsp92I GRCGYC 1 cut(s) 150
Hsp92II CATG 5 cut(s) 116, 144, 277, 541, 607
HspAI GCGC 2 cut(s) 150, 615
KasI GGCGCC 1 cut(s) 149
KroI GCCGGC 4 cut(s) 292, 450, 580, 594
KroNI GCCGGC 4 cut(s) 294, 452, 582, 596
Kzo9I GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
LmnI GCTCC 1 cut(s) 459
Lsp1109I GCAGC 3 cut(s) 25, 146, 170
LweI GCATC 3 cut(s) 333, 381, 1049
MaeI CTAG 1 cut(s) 734
MaeII ACGT 3 cut(s) 253, 477, 870
MaeIII GTNAC 3 cut(s) 773, 968, 1052
MalI GATC 7 cut(s) 287, 398, 687, 693, 886, 902, 1029
MboI GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
MflI RGATCY 2 cut(s) 396, 884
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 2 cut(s) 129, 564
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 2 cut(s) 239, 521
MmeI TCCRAC 2 cut(s) 402, 465
MroNI GCCGGC 4 cut(s) 292, 450, 580, 594
MslI CAYNNNNRTG 1 cut(s) 996
MspA1I CMGCKG 1 cut(s) 183
MspR9I CCNGG 6 cut(s) 59, 80, 191, 224, 280, 367
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 615
NaeI GCCGGC 4 cut(s) 294, 452, 582, 596
NarI GGCGCC 1 cut(s) 150
NciI CCSGG 5 cut(s) 59, 80, 224, 280, 367
NdeII GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
NgoMIV GCCGGC 4 cut(s) 292, 450, 580, 594
NlaIII CATG 5 cut(s) 116, 144, 277, 541, 607
NlaIV GGNNCC 5 cut(s) 151, 240, 398, 455, 646
NmeAIII GCCGAG 2 cut(s) 579, 906
NmuCI GTSAC 1 cut(s) 968
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 249
OliI CACNNNNGTG 1 cut(s) 996
PaeI GCATGC 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 947
PdiI GCCGGC 4 cut(s) 294, 452, 582, 596
PfeI GAWTC 4 cut(s) 348, 361, 721, 1006
PkrI GCNGC 6 cut(s) 40, 85, 161, 185, 305, 614
PleI GAGTC 2 cut(s) 238, 520
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 2 cut(s) 238, 520
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 5 cut(s) 151, 240, 398, 455, 646
PspPI GGNCC 7 cut(s) 51, 85, 144, 238, 428, 716, 878
PspPPI RGGWCCY 1 cut(s) 238
PsrI GAACNNNNNNTAC 2 cut(s) 905, 937
PsuI RGATCY 2 cut(s) 396, 884
PvuII CAGCTG 1 cut(s) 183
RsaI GTAC 3 cut(s) 46, 173, 914
RsaNI GTAC 3 cut(s) 45, 172, 913
RseI CAYNNNNRTG 1 cut(s) 996
Rsr2I CGGWCCG 1 cut(s) 716
RsrII CGGWCCG 1 cut(s) 716
SalI GTCGAC 1 cut(s) 940
SatI GCNGC 6 cut(s) 39, 84, 160, 184, 304, 613
Sau3AI GATC 7 cut(s) 285, 396, 685, 691, 884, 900, 1027
Sau96I GGNCC 7 cut(s) 51, 85, 144, 238, 428, 716, 878
SchI GAGTC 2 cut(s) 239, 521
ScrFI CCNGG 6 cut(s) 59, 80, 191, 224, 280, 367
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 3 cut(s) 333, 381, 1049
SfcI CTRYAG 1 cut(s) 851
SfoI GGCGCC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 4 cut(s) 144, 238, 428, 716
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 1 cut(s) 835
SmoI CTYRAG 1 cut(s) 835
SphI GCATGC 1 cut(s) 607
Sse9I AATT 2 cut(s) 129, 564
SsiI CCGC 8 cut(s) 83, 199, 304, 313, 431, 553, 613, 654
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 1 cut(s) 934
SspMI CTAG 1 cut(s) 734
StyD4I CCNGG 6 cut(s) 57, 78, 189, 222, 278, 365
TaaI ACNGT 4 cut(s) 176, 469, 677, 773
TaiI ACGT 3 cut(s) 256, 480, 873
TaqI TCGA 7 cut(s) 249, 402, 546, 768, 903, 941, 1026
TaqII GACCGA 1 cut(s) 956
TasI AATT 2 cut(s) 129, 564
TauI GCSGC 3 cut(s) 86, 306, 615
TfiI GAWTC 4 cut(s) 348, 361, 721, 1006
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 1 cut(s) 968
TseI GCWGC 3 cut(s) 38, 159, 183
Tsp45I GTSAC 1 cut(s) 968
TspGWI ACGGA 2 cut(s) 426, 927
TspRI CASTG 1 cut(s) 430
VpaK11BI GGWCC 4 cut(s) 144, 238, 428, 716
XapI RAATTY 2 cut(s) 129, 564
XceI RCATGY 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 941
XspI CTAG 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.