MD03G1023300.v1.1

DNA-damage-repair toleration protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
1893102 .. 1894205
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1023300.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGGAGCTGTGCGTCTTTACTTAACGGCAGTGGCCATTACACTCTTCGCAGTTACTTGTGCCGTTCAGGGCTGTCCGCCTTCAGACCGGGCAGCTCTGCTGGCTTTCAAGTCGGCGCTCCACGAATCGAAGCATGGGATCTTCAACTCGTGGGTCGGTACCGATTGCTGCCACAACTGGAAAGGCATCAGCTGCGATCAACAGTCCCGCCGTGTTGCCGACATAAACCTGAGGGGCGAGTCCGAGGACCCGATTTACGAGAAGTCCCACCGGACCGGGTACATGACCGGTACGATCTCCCCGGCCATCTGCCGCCTCACTCGTCTCTCCAGCGTCACCATCGCCGACTGGAAGGGAATTACCGGCGAGATTCCGAAATGCATCACTACGCTCCCTTTCCTCCGCATCCTTGACCTCATCGGAAACAGAATTTCCGGCGAGATTCCTGCCGGTATCGGACGGCTACACCGTCTCACGGTTCTCAACTTCGCCGATAACCTCATCTCCGGCCCAATACCAGCCTCGCTCACCAACCTCTCCAGCCTCATGCACCTTGACCTCCGAAACAACAAAATATCGGGCGAGTTGCCCCGAGATTTTGGCCGACTAGGAATGCTGAGCCGGGCTTTGCTGAGCCGAAACTTGATCACCGGTACCATCCCGAGCTCGATCTCGCAAATTTACCGTCTCGCGGATCTGGATCTTTCCTTGAACCAGCTTTCGGGTCCGATTCCTGCTACAATCGGCAAAATGGCGGTTCTTGCAACGCTAAATCTCGATTGCAACAAAATATCGGGTCGTATACCGCCCAGTTTAATTGTATCGGCCATTAGCAACTTGAACTTGAGCCGAAACTCTCTTTCGGGCCTGATACCGGATGTTTTCGGACCGCGATCCTACTTCACGGCGATTGATTTGTCGTTCAATAGTTTAAGGGGCGATATCCCGAAATCTATCATTTCGGCTTCATATATCGGGCACTTAGATTTGAGCCACAACCACCTTTGCGGGCGGATTCCGGCCGGCTCGCCGTTCGACCACCTTGAAGCGTCGTCTTTTAGTTACAACGATTGCTTATGTGGCAAGCCACTAAAAACTTGCTAG

Protein Analysis

368

Amino Acids

39.62

Weight (kDa)

8.93

Isoelectric Point (pI)

33.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 27 - 66 2.9e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 104 - 188 3.2e-08 Leucine-rich repeat region
LRR_8 PF13855 134 - 192 1.2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20820 AT5G12940
fragaria_vesca FvH4_3g43270
malus_domestica MD03G1023300.v1.1 MD11G1028200.v1.1
prunus_persica Prupe.6G022400_v2.0.a1
pyrus_communis pycom03g01990 pycom11g02190
rosa_chinensis RchiOBHm_Chr5g0077331
rosa_laevigata RLG00000036686
rosa_multiflora Rmu_sc0000433.1_g000028
rosa_roxburghii Rroxscaffold_1G00004580
rosa_rugosa Rorug05G0453800
rosa_samantha Rh5AG509000 Rh5BG530300 Rh5CG554700 Rh5DG542600
rosa_wichuraiana Rw5G046840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 158, 653
AccB1I GGYRCC 2 cut(s) 158, 653
AccI GTMKAC 1 cut(s) 802
AccII CGCG 2 cut(s) 692, 892
AclWI GGATC 4 cut(s) 146, 702, 708, 888
AcoI YGGCCR 5 cut(s) 33, 303, 601, 825, 1020
AcsI RAATTY 2 cut(s) 429, 678
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 4 cut(s) 160, 281, 292, 655
AfiI CCNNNNNNNGG 4 cut(s) 475, 691, 721, 874
AgeI ACCGGT 2 cut(s) 287, 650
AgsI TTSAA 6 cut(s) 109, 145, 712, 841, 925, 1046
AluBI AGCT 5 cut(s) 8, 95, 192, 666, 718
AluI AGCT 5 cut(s) 8, 95, 192, 666, 718
Alw21I GWGCWC 1 cut(s) 668
Alw26I GTCTC 3 cut(s) 329, 476, 692
AlwI GGATC 4 cut(s) 146, 702, 708, 888
Ama87I CYCGRG 2 cut(s) 591, 661
AoxI GGCC 7 cut(s) 33, 303, 508, 601, 825, 865, 1020
ApeKI GCWGC 3 cut(s) 92, 168, 192
ApoI RAATTY 2 cut(s) 429, 678
ArsI GACNNNNNNTTYG 2 cut(s) 670, 702
AsiGI ACCGGT 2 cut(s) 287, 650
Asp718I GGTACC 2 cut(s) 158, 653
AspLEI GCGC 1 cut(s) 118
AspS9I GGNCC 6 cut(s) 247, 273, 509, 725, 865, 887
AsuC2I CCSGG 4 cut(s) 89, 277, 302, 623
AsuHPI GGTGA 3 cut(s) 328, 520, 640
AvaI CYCGRG 2 cut(s) 591, 661
AvaII GGWCC 4 cut(s) 247, 273, 725, 887
AxyI CCTNAGG 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 981
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 2 cut(s) 158, 653
BanII GRGCYC 1 cut(s) 668
BauI CACGAG 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 668
BbvI GCAGC 3 cut(s) 104, 155, 179
BccI CCATC 3 cut(s) 314, 347, 665
BceAI ACGGC 6 cut(s) 42, 47, 195, 476, 921, 1015
BcgI CGANNNNNNTGC 2 cut(s) 428, 462
BclI TGATCA 1 cut(s) 645
BcnI CCSGG 4 cut(s) 89, 277, 302, 623
BcoDI GTCTC 3 cut(s) 329, 476, 692
BfaI CTAG 2 cut(s) 608, 1102
BfoI RGCGCY 1 cut(s) 119
BisI GCNGC 4 cut(s) 93, 169, 193, 313
BlpI GCTNAGC 2 cut(s) 617, 632
BlsI GCNGC 4 cut(s) 94, 170, 194, 314
Bme1390I CCNGG 4 cut(s) 89, 277, 302, 623
Bme18I GGWCC 4 cut(s) 247, 273, 725, 887
BmeT110I CYCGRG 2 cut(s) 591, 661
BmgT120I GGNCC 6 cut(s) 247, 273, 509, 725, 865, 887
BmiI GGNNCC 4 cut(s) 160, 249, 655, 726
BmrFI CCNGG 4 cut(s) 89, 277, 302, 623
BmrI ACTGGG 1 cut(s) 804
BmsI GCATC 3 cut(s) 195, 390, 414
BmuI ACTGGG 1 cut(s) 804
BpmI CTGGAG 2 cut(s) 313, 523
Bpu1102I GCTNAGC 2 cut(s) 617, 632
BpuEI CTTGAG 1 cut(s) 865
BpuMI CCSGG 4 cut(s) 89, 277, 302, 623
BsaBI GATNNNNATC 1 cut(s) 699
BsaJI CCNNGG 2 cut(s) 243, 300
BsaWI WCCGGW 4 cut(s) 270, 287, 650, 874
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 475, 691, 721, 874
Bse118I RCCGGY 5 cut(s) 287, 362, 449, 650, 1022
Bse1I ACTGG 3 cut(s) 182, 353, 810
Bse21I CCTNAGG 1 cut(s) 230
Bse8I GATNNNNATC 1 cut(s) 699
BseDI CCNNGG 2 cut(s) 243, 300
BseGI GGATG 3 cut(s) 405, 657, 883
BseJI GATNNNNATC 1 cut(s) 699
BseLI CCNNNNNNNGG 4 cut(s) 475, 691, 721, 874
BseMII CTCAG 3 cut(s) 221, 608, 623
BseNI ACTGG 3 cut(s) 182, 353, 810
BseSI GKGCMC 1 cut(s) 981
BseX3I CGGCCG 1 cut(s) 1020
BseXI GCAGC 3 cut(s) 104, 155, 179
Bsh1236I CGCG 2 cut(s) 692, 892
Bsh1285I CGRYCG 1 cut(s) 1023
BshFI GGCC 7 cut(s) 35, 305, 510, 603, 827, 867, 1022
BshNI GGYRCC 2 cut(s) 158, 653
BshTI ACCGGT 2 cut(s) 287, 650
BsiEI CGRYCG 1 cut(s) 1023
BsiHKAI GWGCWC 1 cut(s) 668
BsiHKCI CYCGRG 2 cut(s) 591, 661
BslFI GGGAC 2 cut(s) 190, 250
BslI CCNNNNNNNGG 4 cut(s) 475, 691, 721, 874
BsmAI GTCTC 3 cut(s) 329, 476, 692
BsmBI CGTCTC 3 cut(s) 329, 476, 692
BsmFI GGGAC 2 cut(s) 190, 250
BsmI GAATGC 1 cut(s) 618
BsnI GGCC 7 cut(s) 35, 305, 510, 603, 827, 867, 1022
BsoBI CYCGRG 2 cut(s) 591, 661
Bsp1286I GDGCHC 2 cut(s) 668, 981
Bsp143I GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
Bsp1720I GCTNAGC 2 cut(s) 617, 632
BspANI GGCC 7 cut(s) 35, 305, 510, 603, 827, 867, 1022
BspCNI CTCAG 3 cut(s) 222, 609, 624
BspFNI CGCG 2 cut(s) 692, 892
BspLI GGNNCC 4 cut(s) 160, 249, 655, 726
BspPI GGATC 4 cut(s) 146, 702, 708, 888
BspT107I GGYRCC 2 cut(s) 158, 653
BsrFI RCCGGY 5 cut(s) 287, 362, 449, 650, 1022
BsrI ACTGG 3 cut(s) 182, 353, 810
BssAI RCCGGY 5 cut(s) 287, 362, 449, 650, 1022
BssECI CCNNGG 2 cut(s) 243, 300
BssMI GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
BssNAI GTATAC 1 cut(s) 803
BssSI CACGAG 1 cut(s) 148
Bst1107I GTATAC 1 cut(s) 803
Bst2BI CACGAG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 204, 470, 478, 686
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 192
BstC8I GCNNGC 5 cut(s) 102, 1010, 1024, 1028, 1085
BstDEI CTNAG 4 cut(s) 230, 617, 632, 982
BstF5I GGATG 3 cut(s) 405, 657, 883
BstFNI CGCG 2 cut(s) 692, 892
BstH2I RGCGCY 1 cut(s) 119
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 8 cut(s) 141, 199, 297, 648, 672, 697, 703, 896
BstMAI GTCTC 3 cut(s) 329, 476, 692
BstMBI GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
BstMCI CGRYCG 1 cut(s) 1023
BstMWI GCNNNNNNNGC 4 cut(s) 101, 192, 761, 1080
BstSCI CCNGG 4 cut(s) 87, 275, 300, 621
BstSLI GKGCMC 1 cut(s) 981
BstUI CGCG 2 cut(s) 692, 892
BstV1I GCAGC 3 cut(s) 104, 155, 179
BstX2I RGATCY 3 cut(s) 138, 694, 700
BstYI RGATCY 3 cut(s) 138, 694, 700
BstZ17I GTATAC 1 cut(s) 803
BstZI CGGCCG 1 cut(s) 1020
Bsu36I CCTNAGG 1 cut(s) 230
BsuRI GGCC 7 cut(s) 35, 305, 510, 603, 827, 867, 1022
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 3 cut(s) 405, 657, 883
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 5 cut(s) 102, 1010, 1024, 1028, 1085
CfoI GCGC 1 cut(s) 118
Cfr10I RCCGGY 5 cut(s) 287, 362, 449, 650, 1022
Cfr13I GGNCC 6 cut(s) 247, 273, 509, 725, 865, 887
CpoI CGGWCCG 2 cut(s) 273, 887
CseI GACGC 3 cut(s) 2, 322, 1038
Csp6I GTAC 4 cut(s) 159, 280, 291, 654
CspAI ACCGGT 2 cut(s) 287, 650
CspI CGGWCCG 2 cut(s) 273, 887
CviAII CATG 3 cut(s) 134, 283, 547
CviQI GTAC 4 cut(s) 159, 280, 291, 654
DdeI CTNAG 4 cut(s) 230, 617, 632, 982
DpnI GATC 8 cut(s) 140, 198, 296, 647, 671, 696, 702, 895
DpnII GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
EaeI YGGCCR 5 cut(s) 33, 303, 601, 825, 1020
EagI CGGCCG 1 cut(s) 1020
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 2 cut(s) 66, 1027
Ecl136II GAGCTC 1 cut(s) 666
EclXI CGGCCG 1 cut(s) 1020
Eco24I GRGCYC 1 cut(s) 668
Eco32I GATATC 1 cut(s) 943
Eco47I GGWCC 4 cut(s) 247, 273, 725, 887
Eco52I CGGCCG 1 cut(s) 1020
Eco53kI GAGCTC 1 cut(s) 666
Eco57I CTGAAG 1 cut(s) 66
Eco81I CCTNAGG 1 cut(s) 230
Eco88I CYCGRG 2 cut(s) 591, 661
EcoICRI GAGCTC 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 247
EcoRV GATATC 1 cut(s) 943
EcoT22I ATGCAT 1 cut(s) 383
EcoT38I GRGCYC 1 cut(s) 668
Esp3I CGTCTC 3 cut(s) 329, 476, 692
FaeI CATG 3 cut(s) 137, 286, 550
FaiI YATR 8 cut(s) 135, 224, 284, 548, 803, 970, 972, 1078
FaqI GGGAC 2 cut(s) 190, 250
FatI CATG 3 cut(s) 133, 282, 546
FauI CCCGC 2 cut(s) 215, 1001
FbaI TGATCA 1 cut(s) 645
FblI GTMKAC 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 93, 169, 193, 313
FokI GGATG 3 cut(s) 392, 644, 890
FriOI GRGCYC 1 cut(s) 668
Fsp4HI GCNGC 4 cut(s) 93, 169, 193, 313
FspBI CTAG 2 cut(s) 608, 1102
GlaI GCGC 1 cut(s) 117
GluI GCNGC 4 cut(s) 93, 169, 193, 313
GsuI CTGGAG 2 cut(s) 313, 523
HaeII RGCGCY 1 cut(s) 119
HaeIII GGCC 7 cut(s) 35, 305, 510, 603, 827, 867, 1022
HgaI GACGC 3 cut(s) 2, 322, 1038
HhaI GCGC 1 cut(s) 118
Hin1II CATG 3 cut(s) 137, 286, 550
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HinfI GANTC 6 cut(s) 125, 239, 370, 442, 730, 1015
HphI GGTGA 3 cut(s) 328, 520, 640
Hpy166II GTNNAC 1 cut(s) 803
Hpy188I TCNGA 8 cut(s) 85, 244, 375, 422, 458, 563, 729, 887
Hpy188III TCNNGA 4 cut(s) 661, 698, 776, 946
Hpy8I GTNNAC 1 cut(s) 803
Hpy99I CGWCG 1 cut(s) 1054
HpyAV CCTTC 2 cut(s) 90, 346
HpyCH4III ACNGT 4 cut(s) 204, 470, 478, 686
HpyCH4V TGCA 4 cut(s) 381, 550, 764, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 192, 761, 1080
HpyF3I CTNAG 4 cut(s) 230, 617, 632, 982
Hsp92II CATG 3 cut(s) 137, 286, 550
HspAI GCGC 1 cut(s) 116
KpnI GGTACC 2 cut(s) 162, 657
KroI GCCGGC 1 cut(s) 1022
KroNI GCCGGC 1 cut(s) 1024
Ksp22I TGATCA 1 cut(s) 645
Kzo9I GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
LmnI GCTCC 3 cut(s) 5, 123, 396
Lsp1109I GCAGC 3 cut(s) 104, 155, 179
LweI GCATC 3 cut(s) 195, 390, 414
MaeI CTAG 2 cut(s) 608, 1102
MaeIII GTNAC 3 cut(s) 52, 334, 1061
MalI GATC 8 cut(s) 140, 198, 296, 647, 671, 696, 702, 895
MboI GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
MboII GAAGA 2 cut(s) 37, 133
MflI RGATCY 3 cut(s) 138, 694, 700
MhlI GDGCHC 2 cut(s) 668, 981
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 4 cut(s) 357, 429, 678, 816
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 383
MroNI GCCGGC 1 cut(s) 1022
MscI TGGCCA 1 cut(s) 35
MseI TTAA 3 cut(s) 23, 815, 932
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 192
MspR9I CCNGG 4 cut(s) 89, 277, 302, 623
Mva1269I GAATGC 1 cut(s) 618
MvnI CGCG 2 cut(s) 692, 892
MwoI GCNNNNNNNGC 4 cut(s) 101, 192, 761, 1080
NaeI GCCGGC 1 cut(s) 1024
NciI CCSGG 4 cut(s) 89, 277, 302, 623
NdeII GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
NgoMIV GCCGGC 1 cut(s) 1022
NlaIII CATG 3 cut(s) 137, 286, 550
NlaIV GGNNCC 4 cut(s) 160, 249, 655, 726
NmuCI GTSAC 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 466
PctI GAATGC 1 cut(s) 618
PdiI GCCGGC 1 cut(s) 1024
PfeI GAWTC 5 cut(s) 125, 370, 442, 730, 1015
PinAI ACCGGT 2 cut(s) 287, 650
PkrI GCNGC 4 cut(s) 94, 170, 194, 314
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 668
Psp5II RGGWCCY 1 cut(s) 247
PspN4I GGNNCC 4 cut(s) 160, 249, 655, 726
PspPI GGNCC 6 cut(s) 247, 273, 509, 725, 865, 887
PspPPI RGGWCCY 1 cut(s) 247
PsuI RGATCY 3 cut(s) 138, 694, 700
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 4 cut(s) 160, 281, 292, 655
RsaNI GTAC 4 cut(s) 159, 280, 291, 654
Rsr2I CGGWCCG 2 cut(s) 273, 887
RsrII CGGWCCG 2 cut(s) 273, 887
SacI GAGCTC 1 cut(s) 668
SaqAI TTAA 3 cut(s) 23, 815, 932
SatI GCNGC 4 cut(s) 93, 169, 193, 313
Sau3AI GATC 8 cut(s) 138, 196, 294, 645, 669, 694, 700, 893
Sau96I GGNCC 6 cut(s) 247, 273, 509, 725, 865, 887
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 4 cut(s) 89, 277, 302, 623
SduI GDGCHC 2 cut(s) 668, 981
SfaNI GCATC 3 cut(s) 195, 390, 414
SinI GGWCC 4 cut(s) 247, 273, 725, 887
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 4 cut(s) 357, 429, 678, 816
SspMI CTAG 2 cut(s) 608, 1102
SstI GAGCTC 1 cut(s) 668
StyD4I CCNGG 4 cut(s) 87, 275, 300, 621
TaaI ACNGT 4 cut(s) 204, 470, 478, 686
TaqI TCGA 4 cut(s) 128, 668, 777, 1035
TasI AATT 4 cut(s) 357, 429, 678, 816
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 5 cut(s) 125, 370, 442, 730, 1015
Tru1I TTAA 3 cut(s) 23, 815, 932
Tru9I TTAA 3 cut(s) 23, 815, 932
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 92, 168, 192
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 957
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 4 cut(s) 247, 273, 725, 887
XapI RAATTY 2 cut(s) 429, 678
XmiI GTMKAC 1 cut(s) 802
XspI CTAG 2 cut(s) 608, 1102
Zsp2I ATGCAT 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.