Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012849

Physical Location & Seq

Genomic Coordinates Forward (+)

1798907 .. 1800144

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G022400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAAACAGCCATACGCCTTCACTTAACAGTCGTCGCCGTCATACTCTTCGCCGTTACTTTTGCCTCCGTCAGGGCCTGTCCGCCATCGGACCTGGCCGCCCTTCTCGCAATCAAAGCGGCGCTCCACGAGCCGCATTTCGGGATTTTCAACTCCTGGACCGGCACCGACTGCTGCCACAACTGGCACGGCGTCAGCTGCGACCCGGAGACCGGTCGAGTCGCCGACATAAACCTCCGGGGCGAGGCCGAAGACCCGATTTACGAGAAGAATCACCGAACCGGGTACATGACCGGGACCATCTCTCCCGCCATCTGCCGCCTGACCCGGCTCTCCAGCCTCACCATCGCCGATTGGAAGGGAATCACCGGCGAGATTCCGAAATGTATCACGACGCTGCCGTTCCTCCGAATCTTCGACCTCATGGGAAACAAAATATCAGGCCAGATTCCGGCAGGTATCGGCCGGCTACACCGGCTCACAGTCCTCAACTTCGCCGACAACCTCATCTCCGGCCCTATCCCGACCTCACTCACTAACCTCTCCAGCCTCATGCACCTCGACCTCCGAAACAACAAAATTTCGGGGGAGCTGCCCCGAGATTTCGGCCGACTCGGCATGCTGAGCCGGGCCTTGCTGAGCAGAAACCTCATAGGCGGTACAATCCCGAGTTCGATTGCTCAAATTTACCGCCTCGCGGATCTGGATCTTTCCTTGAATCAGATTTCAGGTCCGATCCCCCCTACAATCGGCAAAATGGCGGTTCTCGCGACGCTAAATCTTGATTCCAACAAAATATCAGGTCGCATACCGCCGAGTTTGCTTGTCTCGGGCATTAGCAACTTGAATTTGAGCAAGAACTTTCTCGATGGTATTATACCGGATGTGTTTGGGCCGAGTTCTTACTTCACCGTGATCGATTTATCGTTCAACAAATTGAGGGGCAATATCCCGAAATCTATAATTTCGGCTTCGTATATCGGGCACTTGGATTTGAGCCATAACCACTTGTGTGGGAGAATTCCGGCTGGGTCGCCGTTCGATCACCTCGAACCGTCGTCATTTACTTACAACGATTGTCTTTGCGGAAAGCCACTAAAAACCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

370

Amino Acids

39.91

Weight (kDa)

8.51

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20820 AT5G12940
fragaria_vesca	FvH4_3g43270
malus_domestica	MD03G1023300.v1.1 MD11G1028200.v1.1
prunus_persica	Prupe.6G022400_v2.0.a1
pyrus_communis	pycom03g01990 pycom11g02190
rosa_chinensis	RchiOBHm_Chr5g0077331
rosa_laevigata	RLG00000036686
rosa_multiflora	Rmu_sc0000433.1_g000028
rosa_roxburghii	Rroxscaffold_1G00004580
rosa_rugosa	Rorug05G0453800
rosa_samantha	Rh5AG509000 Rh5BG530300 Rh5CG554700 Rh5DG542600
rosa_wichuraiana	Rw5G046840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	1 cut(s)	164
AccII	CGCG	2 cut(s)	698, 770
AclWI	GGATC	3 cut(s)	708, 714, 730
AcoI	YGGCCR	3 cut(s)	96, 463, 607
AcsI	RAATTY	4 cut(s)	579, 684, 847, 1020
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	2 cut(s)	287, 661
AfiI	CCNNNNNNNGG	7 cut(s)	72, 140, 212, 244, 451, 697, 749
AgeI	ACCGGT	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	151, 718, 847, 931
AjnI	CCWGG	2 cut(s)	93, 155
AleI	CACNNNNGTG	1 cut(s)	1011
AluBI	AGCT	2 cut(s)	198, 592
AluI	AGCT	2 cut(s)	198, 592
Alw26I	GTCTC	2 cut(s)	203, 832
AlwI	GGATC	3 cut(s)	708, 714, 730
AlwNI	CAGNNNCTG	1 cut(s)	78
Ama87I	CYCGRG	3 cut(s)	597, 667, 829
AoxI	GGCC	9 cut(s)	75, 96, 246, 442, 463, 514, 607, 630, 893
ApeKI	GCWGC	4 cut(s)	174, 198, 397, 592
ApoI	RAATTY	4 cut(s)	579, 684, 847, 1020
AsiGI	ACCGGT	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	8 cut(s)	75, 91, 159, 297, 515, 630, 731, 893
AsuC2I	CCSGG	6 cut(s)	206, 239, 283, 295, 328, 629
AsuHPI	GGTGA	5 cut(s)	266, 334, 358, 901, 1037
AvaI	CYCGRG	3 cut(s)	597, 667, 829
AvaII	GGWCC	4 cut(s)	91, 159, 297, 731
BaeGI	GKGCMC	1 cut(s)	987
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	161, 185, 384, 579
BccI	CCATC	5 cut(s)	94, 308, 320, 353, 863
BceAI	ACGGC	5 cut(s)	23, 38, 205, 385, 1021
BciT130I	CCWGG	2 cut(s)	95, 157
BcnI	CCSGG	6 cut(s)	206, 239, 283, 295, 328, 629
BcoDI	GTCTC	2 cut(s)	203, 832
BfoI	RGCGCY	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	615
BisI	GCNGC	8 cut(s)	99, 120, 134, 175, 199, 319, 398, 593
BlpI	GCTNAGC	2 cut(s)	623, 638
BlsI	GCNGC	8 cut(s)	100, 121, 135, 176, 200, 320, 399, 594
Bme1390I	CCNGG	8 cut(s)	95, 157, 206, 239, 283, 295, 328, 629
Bme18I	GGWCC	4 cut(s)	91, 159, 297, 731
BmeT110I	CYCGRG	3 cut(s)	597, 667, 829
BmgT120I	GGNCC	8 cut(s)	75, 91, 159, 297, 515, 630, 731, 893
BmiI	GGNNCC	2 cut(s)	166, 298
BmrFI	CCNGG	8 cut(s)	95, 157, 206, 239, 283, 295, 328, 629
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	2 cut(s)	319, 529
Bpu1102I	GCTNAGC	2 cut(s)	623, 638
BpuMI	CCSGG	6 cut(s)	206, 239, 283, 295, 328, 629
Bsa29I	ATCGAT	1 cut(s)	918
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	212, 880
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 494, 524
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 140, 212, 244, 451, 697, 749
Bse118I	RCCGGY	5 cut(s)	161, 212, 368, 465, 474
Bse1I	ACTGG	1 cut(s)	188
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	2 cut(s)	95, 157
BseCI	ATCGAT	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	889
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	7 cut(s)	72, 140, 212, 244, 451, 697, 749
BseMII	CTCAG	2 cut(s)	614, 629
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	987
BseX3I	CGGCCG	2 cut(s)	463, 607
BseXI	GCAGC	4 cut(s)	161, 185, 384, 579
BseYI	CCCAGC	1 cut(s)	1028
Bsh1236I	CGCG	2 cut(s)	698, 770
Bsh1285I	CGRYCG	3 cut(s)	217, 466, 610
BshFI	GGCC	9 cut(s)	77, 98, 248, 444, 465, 516, 609, 632, 895
BshNI	GGYRCC	1 cut(s)	164
BshTI	ACCGGT	1 cut(s)	212
BshVI	ATCGAT	1 cut(s)	918
BsiEI	CGRYCG	3 cut(s)	217, 466, 610
BsiHKCI	CYCGRG	3 cut(s)	597, 667, 829
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	7 cut(s)	72, 140, 212, 244, 451, 697, 749
BsmAI	GTCTC	2 cut(s)	203, 832
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	9 cut(s)	77, 98, 248, 444, 465, 516, 609, 632, 895
Bso31I	GGTCTC	1 cut(s)	203
BsoBI	CYCGRG	3 cut(s)	597, 667, 829
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp143I	GATC	5 cut(s)	700, 706, 735, 915, 1042
Bsp1720I	GCTNAGC	2 cut(s)	623, 638
Bsp68I	TCGCGA	1 cut(s)	770
BspANI	GGCC	9 cut(s)	77, 98, 248, 444, 465, 516, 609, 632, 895
BspCNI	CTCAG	2 cut(s)	615, 630
BspDI	ATCGAT	1 cut(s)	918
BspFNI	CGCG	2 cut(s)	698, 770
BspLI	GGNNCC	2 cut(s)	166, 298
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	3 cut(s)	708, 714, 730
BspT107I	GGYRCC	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	203
BsrFI	RCCGGY	5 cut(s)	161, 212, 368, 465, 474
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	5 cut(s)	161, 212, 368, 465, 474
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	5 cut(s)	700, 706, 735, 915, 1042
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	95, 157
Bst4CI	ACNGT	4 cut(s)	31, 484, 913, 1056
Bst6I	CTCTTC	1 cut(s)	53
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	467, 620
BstDEI	CTNAG	2 cut(s)	623, 638
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	889
BstFNI	CGCG	2 cut(s)	698, 770
BstH2I	RGCGCY	1 cut(s)	125
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	5 cut(s)	703, 709, 738, 918, 1045
BstMAI	GTCTC	2 cut(s)	203, 832
BstMBI	GATC	5 cut(s)	700, 706, 735, 915, 1042
BstMCI	CGRYCG	3 cut(s)	217, 466, 610
BstNI	CCWGG	2 cut(s)	95, 157
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	8 cut(s)	93, 155, 204, 237, 281, 293, 326, 627
BstSLI	GKGCMC	1 cut(s)	987
BstUI	CGCG	2 cut(s)	698, 770
BstV1I	GCAGC	4 cut(s)	161, 185, 384, 579
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	700, 706
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	2 cut(s)	700, 706
BstZI	CGGCCG	2 cut(s)	463, 607
Bsu15I	ATCGAT	1 cut(s)	918
BsuRI	GGCC	9 cut(s)	77, 98, 248, 444, 465, 516, 609, 632, 895
BsuTUI	ATCGAT	1 cut(s)	918
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	889
BtuMI	TCGCGA	1 cut(s)	770
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	467, 620
CaiI	CAGNNNCTG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	5 cut(s)	161, 212, 368, 465, 474
Cfr13I	GGNCC	8 cut(s)	75, 91, 159, 297, 515, 630, 731, 893
ClaI	ATCGAT	1 cut(s)	918
CseI	GACGC	3 cut(s)	181, 403, 781
Csp6I	GTAC	2 cut(s)	286, 660
CspAI	ACCGGT	1 cut(s)	212
CviAII	CATG	4 cut(s)	289, 424, 553, 619
CviQI	GTAC	2 cut(s)	286, 660
DdeI	CTNAG	2 cut(s)	623, 638
DpnI	GATC	5 cut(s)	702, 708, 737, 917, 1044
DpnII	GATC	5 cut(s)	700, 706, 735, 915, 1042
EaeI	YGGCCR	3 cut(s)	96, 463, 607
EagI	CGGCCG	2 cut(s)	463, 607
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	72
EclXI	CGGCCG	2 cut(s)	463, 607
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	4 cut(s)	91, 159, 297, 731
Eco52I	CGGCCG	2 cut(s)	463, 607
Eco88I	CYCGRG	3 cut(s)	597, 667, 829
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	1020
EcoRII	CCWGG	2 cut(s)	93, 155
FaeI	CATG	4 cut(s)	292, 427, 556, 622
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	288, 423, 552, 618
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	8 cut(s)	99, 120, 134, 175, 199, 319, 398, 593
FokI	GGATG	1 cut(s)	896
Fsp4HI	GCNGC	8 cut(s)	99, 120, 134, 175, 199, 319, 398, 593
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	8 cut(s)	99, 120, 134, 175, 199, 319, 398, 593
GsaI	CCCAGC	1 cut(s)	1032
GsuI	CTGGAG	2 cut(s)	319, 529
HaeII	RGCGCY	1 cut(s)	125
HaeIII	GGCC	9 cut(s)	77, 98, 248, 444, 465, 516, 609, 632, 895
HgaI	GACGC	3 cut(s)	181, 403, 781
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	292, 427, 556, 622
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	9 cut(s)	219, 271, 363, 376, 411, 448, 612, 718, 785
HphI	GGTGA	5 cut(s)	266, 334, 358, 901, 1037
Hpy188I	TCNGA	6 cut(s)	91, 381, 410, 569, 723, 735
Hpy188III	TCNNGA	9 cut(s)	142, 391, 523, 667, 704, 769, 782, 866, 952
Hpy99I	CGWCG	4 cut(s)	38, 397, 775, 1060
HpyAV	CCTTC	3 cut(s)	29, 113, 352
HpyCH4III	ACNGT	4 cut(s)	31, 484, 913, 1056
HpyCH4V	TGCA	1 cut(s)	556
HpyF3I	CTNAG	2 cut(s)	623, 638
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	292, 427, 556, 622
HspAI	GCGC	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	465
KroNI	GCCGGC	1 cut(s)	467
Kzo9I	GATC	5 cut(s)	700, 706, 735, 915, 1042
LmnI	GCTCC	2 cut(s)	129, 589
Lsp1109I	GCAGC	4 cut(s)	161, 185, 384, 579
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	702, 708, 737, 917, 1044
MboI	GATC	5 cut(s)	700, 706, 735, 915, 1042
MboII	GAAGA	4 cut(s)	40, 263, 280, 406
MflI	RGATCY	2 cut(s)	700, 706
MhlI	GDGCHC	1 cut(s)	987
MluCI	AATT	6 cut(s)	579, 684, 847, 935, 963, 1020
MlyI	GAGTC	2 cut(s)	228, 606
MmeI	TCCRAC	1 cut(s)	813
MroNI	GCCGGC	1 cut(s)	465
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	1011
MspA1I	CMGCKG	1 cut(s)	198
MspR9I	CCNGG	8 cut(s)	95, 157, 206, 239, 283, 295, 328, 629
MvaI	CCWGG	2 cut(s)	95, 157
MvnI	CGCG	2 cut(s)	698, 770
NaeI	GCCGGC	1 cut(s)	467
NciI	CCSGG	6 cut(s)	206, 239, 283, 295, 328, 629
NdeII	GATC	5 cut(s)	700, 706, 735, 915, 1042
NgoMIV	GCCGGC	1 cut(s)	465
NlaIII	CATG	4 cut(s)	292, 427, 556, 622
NlaIV	GGNNCC	2 cut(s)	166, 298
NmeAIII	GCCGAG	3 cut(s)	594, 840, 921
NruI	TCGCGA	1 cut(s)	770
NspI	RCATGY	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	1011
PaeI	GCATGC	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	2 cut(s)	398, 1047
PdiI	GCCGGC	1 cut(s)	467
PfeI	GAWTC	7 cut(s)	271, 363, 376, 411, 448, 718, 785
PfoI	TCCNGGA	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	212
PkrI	GCNGC	8 cut(s)	100, 121, 135, 176, 200, 320, 399, 594
PleI	GAGTC	2 cut(s)	227, 606
PpsI	GAGTC	2 cut(s)	227, 606
Psp6I	CCWGG	2 cut(s)	93, 155
PspFI	CCCAGC	1 cut(s)	1028
PspGI	CCWGG	2 cut(s)	93, 155
PspN4I	GGNNCC	2 cut(s)	166, 298
PspPI	GGNCC	8 cut(s)	75, 91, 159, 297, 515, 630, 731, 893
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	700, 706
PvuII	CAGCTG	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	770
RsaI	GTAC	2 cut(s)	287, 661
RsaNI	GTAC	2 cut(s)	286, 660
RseI	CAYNNNNRTG	1 cut(s)	1011
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	8 cut(s)	99, 120, 134, 175, 199, 319, 398, 593
Sau3AI	GATC	5 cut(s)	700, 706, 735, 915, 1042
Sau96I	GGNCC	8 cut(s)	75, 91, 159, 297, 515, 630, 731, 893
SchI	GAGTC	2 cut(s)	228, 606
ScrFI	CCNGG	8 cut(s)	95, 157, 206, 239, 283, 295, 328, 629
SduI	GDGCHC	1 cut(s)	987
SgrAI	CRCCGGYG	1 cut(s)	368
SinI	GGWCC	4 cut(s)	91, 159, 297, 731
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SphI	GCATGC	1 cut(s)	622
Sse9I	AATT	6 cut(s)	579, 684, 847, 935, 963, 1020
StyD4I	CCNGG	8 cut(s)	93, 155, 204, 237, 281, 293, 326, 627
TaaI	ACNGT	4 cut(s)	31, 484, 913, 1056
TaqI	TCGA	8 cut(s)	217, 417, 561, 674, 867, 918, 1041, 1050
TasI	AATT	6 cut(s)	579, 684, 847, 935, 963, 1020
TauI	GCSGC	4 cut(s)	101, 122, 136, 321
TfiI	GAWTC	7 cut(s)	271, 363, 376, 411, 448, 718, 785
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	4 cut(s)	174, 198, 397, 592
TspGWI	ACGGA	1 cut(s)	58
VpaK11BI	GGWCC	4 cut(s)	91, 159, 297, 731
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	4 cut(s)	579, 684, 847, 1020
XceI	RCATGY	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.