AT3G20898

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012953
Physical Location & Seq
Forward (+)
7323635 .. 7324634
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20898.1

Sequence Viewer

Length: 327 bp
ATGGCATCAAAAAAAGCAAGAAAACCAAACCGAGCCGAAAAGAAACTCACAAGAAGCTGTTTCAAGAAACAAGTTCCTCAACACAACAACATCAACACAAACACAATCTACTCTGTTCCCTCTCCATCCCCAGCAGCGGTGCTGACGTCACCAGGCGGTTGTTGTACCCCGAAAGCCAAGAAGTCTAGGATACCGGAGATGCTGACGTGTCCACCGGCGCCGAAGAAGCAAAGGGTCTCGAAAAACTGTGTGTTACGACGGAGACAGATCGTTTTCTTTGCTCCGCCGGAGATAGAGCTCTTCTTCGTCAACGCACACGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.13

Weight (kDa)

10.54

Isoelectric Point (pI)

81.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51355 AT3G20898
fragaria_vesca FvH4_3g28800
malus_domestica MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica Prupe.4G249800_v2.0.a1
pyrus_communis pycom03g13210 pycom11g16830
rosa_chinensis RchiOBHm_Chr5g0052211
rosa_laevigata RLG00000034836
rosa_multiflora Rmu_sc0006157.1_g000012
rosa_roxburghii Rroxscaffold_1G00028030
rosa_rugosa Rorug05G0274100
rosa_samantha Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana Rw5G032730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 217
AciI CCGC 3 cut(s) 137, 156, 284
AcyI GRCGYC 2 cut(s) 146, 218
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 1 cut(s) 64
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 57, 298
AluI AGCT 2 cut(s) 57, 298
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 241, 256
ApeKI GCWGC 1 cut(s) 134
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 141
BanI GGYRCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 241, 256
BfaI CTAG 1 cut(s) 186
BfoI RGCGCY 1 cut(s) 221
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 14, 189
Bsa29I ATCGAT 1 cut(s) 322
BsaHI GRCGYC 2 cut(s) 146, 218
BsaI GGTCTC 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 214
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 322
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 146
BseYI CCCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 322
BshNI GGYRCC 1 cut(s) 217
BshVI ATCGAT 1 cut(s) 322
BsiEI CGRYCG 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 300
BsiSI CCGG 3 cut(s) 194, 215, 287
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 2 cut(s) 241, 256
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 267, 319
BspACI CCGC 3 cut(s) 137, 156, 284
BspDI ATCGAT 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 219
BspQI GCTCTTC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssMI GATC 2 cut(s) 267, 319
BssNI GRCGYC 2 cut(s) 146, 218
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 305
BstACI GRCGYC 2 cut(s) 146, 218
BstF5I GGATG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 270, 322
BstMAI GTCTC 2 cut(s) 241, 256
BstMBI GATC 2 cut(s) 267, 319
BstMCI CGRYCG 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 322
BsuI GTATCC 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 322
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 125
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 214
ClaI ATCGAT 1 cut(s) 322
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 4 cut(s) 35, 57, 176, 298
CviKI_1 RGCY 4 cut(s) 35, 57, 176, 298
CviQI GTAC 1 cut(s) 165
DinI GGCGCC 1 cut(s) 219
DpnI GATC 2 cut(s) 269, 321
DpnII GATC 2 cut(s) 267, 319
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
EciI GGCGGA 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 300
EgeI GGCGCC 1 cut(s) 219
EheI GGCGCC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 186
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 221
HapII CCGG 3 cut(s) 194, 215, 287
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 2 cut(s) 146, 218
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HpaII CCGG 3 cut(s) 194, 215, 287
HphI GGTGA 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 212, 310
Hpy188III TCNNGA 2 cut(s) 64, 238
Hpy8I GTNNAC 2 cut(s) 212, 310
Hpy99I CGWCG 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 2 cut(s) 146, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpySE526I ACGT 2 cut(s) 146, 206
Hsp92I GRCGYC 2 cut(s) 146, 218
HspAI GCGC 1 cut(s) 218
KasI GGCGCC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 267, 319
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 6 cut(s) 138, 144, 165, 207, 228, 300
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 2 cut(s) 14, 189
MaeI CTAG 1 cut(s) 186
MaeII ACGT 2 cut(s) 146, 206
MaeIII GTNAC 2 cut(s) 147, 252
MalI GATC 2 cut(s) 269, 321
MboI GATC 2 cut(s) 267, 319
MboII GAAGA 3 cut(s) 235, 292, 295
MhlI GDGCHC 1 cut(s) 300
Mly113I GGCGCC 1 cut(s) 218
MnlI CCTC 2 cut(s) 87, 130
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 194, 215, 287
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 226
NarI GGCGCC 1 cut(s) 218
NdeII GATC 2 cut(s) 267, 319
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 136
Ple19I CGATCG 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 219
PvuI CGATCG 1 cut(s) 322
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SacI GAGCTC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 305
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 2 cut(s) 267, 319
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 300
SetI ASST 4 cut(s) 59, 149, 209, 300
SfaNI GCATC 2 cut(s) 14, 189
SfoI GGCGCC 1 cut(s) 219
SgrAI CRCCGGYG 1 cut(s) 214
SsiI CCGC 3 cut(s) 137, 156, 284
SspDI GGCGCC 1 cut(s) 217
SspMI CTAG 1 cut(s) 186
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 2 cut(s) 149, 209
TaqI TCGA 2 cut(s) 239, 322
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 274
XspI CTAG 1 cut(s) 186
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.