Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012953

Physical Location & Seq

Genomic Coordinates Reverse (-)

21789306 .. 21791041

Gene Structure 1736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCCCACCGGAAGAACAAGAGCAAGCAGGCCTAAAACAGCAAGAAAGGCAAGAAGAACCATTGTCAAGAAGCCGGTAGTAGTTGTCAAGCCAAAGCAAAAGATTCAGAAGACGCCTCCTCCTCCTCCGAGTTCACCTTCCAAGTCCTCCTCCTCCTTGATCTCTAGTGGCCTTTCGAAGACCGAAAGCATAGATTTCGAGGCTGTTGATGTCTCTGCAACTTCTAGCCCTTGCTCCACACCAAAAGCTCAGAGATTTCGAATACCCCAGATTGTGTCATGCCCACCAGCACCAAAGAAGCCAAGAGTGAGTTCAAATTGCTTGTTCCGGAGATCTCCAATCGCCTTCTTTGCTCCACCGGAATTGGAGCTCTTCTTCTACTACGCAAATCGCGGTATTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.84

Weight (kDa)

11.06

Isoelectric Point (pI)

71.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51355 AT3G20898
fragaria_vesca	FvH4_3g28800
malus_domestica	MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica	Prupe.4G249800_v2.0.a1
pyrus_communis	pycom03g13210 pycom11g16830
rosa_chinensis	RchiOBHm_Chr5g0052211
rosa_laevigata	RLG00000034836
rosa_multiflora	Rmu_sc0006157.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028030
rosa_rugosa	Rorug05G0274100
rosa_samantha	Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana	Rw5G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	318
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	2 cut(s)	251, 373
AluI	AGCT	2 cut(s)	251, 373
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	220
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	2 cut(s)	32, 172
AsuHPI	GGTGA	1 cut(s)	129
AsuII	TTCGAA	2 cut(s)	179, 262
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	2 cut(s)	119, 188
Bbv12I	GWGCWC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	168, 228
BglII	AGATCT	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	6
BpiI	GAAGAC	2 cut(s)	119, 188
Bpu14I	TTCGAA	2 cut(s)	179, 262
BsaHI	GRCGYC	1 cut(s)	116
BsaWI	WCCGGW	3 cut(s)	11, 330, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse118I	RCCGGY	1 cut(s)	76
BseAI	TCCGGA	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	5 cut(s)	111, 114, 117, 142, 145
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	34, 174
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	12, 77, 331, 362
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	34, 174
Bsp119I	TTCGAA	2 cut(s)	179, 262
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	162, 335
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	34, 174
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	380
BspT104I	TTCGAA	2 cut(s)	179, 262
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	2 cut(s)	162, 335
BssNI	GRCGYC	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	116
BstBI	TTCGAA	2 cut(s)	179, 262
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	2 cut(s)	165, 338
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	162, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 353
BstUI	CGCG	1 cut(s)	396
BstV2I	GAAGAC	2 cut(s)	119, 188
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	34, 174
Cac8I	GCNNGC	2 cut(s)	28, 32
Cfr10I	RCCGGY	1 cut(s)	76
CseI	GACGC	1 cut(s)	124
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	164, 337
DpnII	GATC	2 cut(s)	162, 335
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	1 cut(s)	285
FaiI	YATR	2 cut(s)	194, 283
FatI	CATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	375
FspBI	CTAG	2 cut(s)	168, 228
HaeIII	GGCC	2 cut(s)	34, 174
HapII	CCGG	4 cut(s)	12, 77, 331, 362
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	285
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	4 cut(s)	12, 77, 331, 362
HphI	GGTGA	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	111, 132, 255
Hpy188III	TCNNGA	2 cut(s)	70, 331
Hpy8I	GTNNAC	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	150, 358
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 353
HpyF3I	CTNAG	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	285
Kpn2I	TCCGGA	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	162, 335
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	4 cut(s)	10, 242, 361, 370
LpnPI	CCDG	7 cut(s)	16, 25, 90, 284, 303, 344, 375
MaeI	CTAG	2 cut(s)	168, 228
MalI	GATC	2 cut(s)	164, 337
MboI	GATC	2 cut(s)	162, 335
MboII	GAAGA	6 cut(s)	27, 69, 124, 193, 367, 370
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	319, 365
MnlI	CCTC	8 cut(s)	129, 132, 135, 138, 160, 163, 166, 196
MroI	TCCGGA	1 cut(s)	330
MseI	TTAA	1 cut(s)	409
MspI	CCGG	4 cut(s)	12, 77, 331, 362
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	50, 353
NdeII	GATC	2 cut(s)	162, 335
NlaIII	CATG	1 cut(s)	285
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	2 cut(s)	179, 262
PceI	AGGCCT	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	162, 335
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	3 cut(s)	142, 253, 375
SfuI	TTCGAA	2 cut(s)	179, 262
Sse9I	AATT	2 cut(s)	319, 365
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	2 cut(s)	168, 228
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	34
TaqI	TCGA	3 cut(s)	179, 201, 262
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	319, 365
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
XspI	CTAG	2 cut(s)	168, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.