Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012953

Physical Location & Seq

Genomic Coordinates Forward (+)

35706777 .. 35707187

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00028030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTCCCTCTGGAAAAACAAGAGCAAGCAGGCCTAAGACAGCAAGAAAGGCAAGAAGAACCATTTTCAAGAAGCCAGTAGTTGTCAAGCCAAAGCAAAAGATTCAAAAGACGCCTCCTCCTCCGAATTCACCTTCCAAGTCCTCCTCTTTGATCTCCGGTGGCCTTCCGCAGACCGAAAGCATAGATTTCGAGGCTGTTGTTCATCATGATGTCTCTGCAACTTCTAGCCCTTGCTCCACACCAAAAGCTCAGAGATATCGGATACCCCAGATTGTGTCATGTCCTCCAGCACCCAAGAAGCAAAGAGTGAATTCAAATTGCTTGTTTCGGAGATCTCCAATCGCCTTCTTCGCTCCACCGGATTTGGAGCTCTTCTTCTACTTCGCAAATCGCGGTATTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

14.99

Weight (kDa)

10.88

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51355 AT3G20898
fragaria_vesca	FvH4_3g28800
malus_domestica	MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica	Prupe.4G249800_v2.0.a1
pyrus_communis	pycom03g13210 pycom11g16830
rosa_chinensis	RchiOBHm_Chr5g0052211
rosa_laevigata	RLG00000034836
rosa_multiflora	Rmu_sc0006157.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028030
rosa_rugosa	Rorug05G0274100
rosa_samantha	Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana	Rw5G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	396
AciI	CCGC	2 cut(s)	170, 396
AcsI	RAATTY	2 cut(s)	127, 313
AcyI	GRCGYC	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	70, 107, 318
AluBI	AGCT	2 cut(s)	251, 373
AluI	AGCT	2 cut(s)	251, 373
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	2 cut(s)	32, 163
ApoI	RAATTY	2 cut(s)	127, 313
AsuHPI	GGTGA	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciVI	GTATCC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	228
BfuI	GTATCC	1 cut(s)	258
BglII	AGATCT	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	113
BsaWI	WCCGGW	2 cut(s)	158, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse1I	ACTGG	1 cut(s)	77
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	3 cut(s)	108, 111, 136
Bsh1236I	CGCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	34, 165
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	159, 362
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	34, 165
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	153, 335
BspACI	CCGC	2 cut(s)	170, 396
BspANI	GGCC	2 cut(s)	34, 165
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	396
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	77
BssMI	GATC	2 cut(s)	153, 335
BssNI	GRCGYC	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	2 cut(s)	36, 252
BstFNI	CGCG	1 cut(s)	396
BstKTI	GATC	2 cut(s)	156, 338
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	153, 335
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 353
BstUI	CGCG	1 cut(s)	396
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	34, 165
Cac8I	GCNNGC	2 cut(s)	28, 32
CciI	TCATGA	1 cut(s)	208
CseI	GACGC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	2 cut(s)	209, 282
CviJI	RGCY	9 cut(s)	5, 34, 76, 91, 165, 197, 231, 251, 373
CviKI_1	RGCY	9 cut(s)	5, 34, 76, 91, 165, 197, 231, 251, 373
DdeI	CTNAG	2 cut(s)	36, 252
DpnI	GATC	2 cut(s)	155, 337
DpnII	GATC	2 cut(s)	153, 335
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
Ecl136II	GAGCTC	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	375
Eco32I	GATATC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	373
EcoRI	GAATTC	2 cut(s)	127, 313
EcoRV	GATATC	1 cut(s)	260
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	2 cut(s)	212, 285
FaiI	YATR	3 cut(s)	185, 210, 283
FatI	CATG	2 cut(s)	208, 281
FriOI	GRGCYC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	34, 165
HapII	CCGG	2 cut(s)	159, 362
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	212, 285
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	159, 362
HphI	GGTGA	1 cut(s)	123
Hpy188I	TCNGA	4 cut(s)	126, 255, 264, 333
Hpy188III	TCNNGA	3 cut(s)	12, 70, 209
HpyAV	CCTTC	3 cut(s)	144, 176, 358
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 353
HpyF3I	CTNAG	2 cut(s)	36, 252
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	212, 285
Kzo9I	GATC	2 cut(s)	153, 335
LguI	GCTCTTC	1 cut(s)	380
LmnI	GCTCC	4 cut(s)	10, 242, 361, 370
LpnPI	CCDG	6 cut(s)	16, 90, 172, 284, 303, 375
MaeI	CTAG	1 cut(s)	228
MalI	GATC	2 cut(s)	155, 337
MboI	GATC	2 cut(s)	153, 335
MboII	GAAGA	4 cut(s)	69, 343, 367, 370
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	3 cut(s)	127, 313, 319
MnlI	CCTC	8 cut(s)	19, 126, 129, 132, 154, 157, 187, 297
MseI	TTAA	1 cut(s)	409
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	2 cut(s)	159, 362
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	50, 353
NdeII	GATC	2 cut(s)	153, 335
NlaIII	CATG	2 cut(s)	212, 285
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	103
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	375
SapI	GCTCTTC	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	409
Sau3AI	GATC	2 cut(s)	153, 335
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	3 cut(s)	136, 253, 375
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	3 cut(s)	127, 313, 319
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	170, 396
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	375
StuI	AGGCCT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	192
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	127, 313, 319
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	194
XapI	RAATTY	2 cut(s)	127, 313
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.