Prupe.4G249800_v2.0.a1

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012953
Physical Location & Seq
Forward (+)
16697521 .. 16699218
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G249800.1

Sequence Viewer

Length: 393 bp
ATGGCTCCATCTGCAAGAACAAGAGCGAAGACAAAGACAACAACAAAGGCAAGAAAAACCAATTTCAAGAAGAAGCCCGTCCACCAAAAGGGTAAGCAACAAATTACTCCTTCGAATTCTCCTTCGAATTCCTCCTCCGTGGTCTGCGATGATCCTCCGAAGATCGAAGGCTGCGCAGATGATGTGGAGGGTCCTGATGATGTCTCTACAAGCGCTTGCTCCACACCAAAAGGTCAGAGATTTCGGATACCGGAGATTGTGACATGTCCACCGGCGCCCAAGAAGCAAAGAGTGATTTCAAACTGCTTGTTTCGGAGATCTCCCATCGCTTTCTTTGCTCCCCCAGACTTGGAGCTCTTCTTCTACTTTGCAAATGGCGGTATTTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

9.71

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51355 AT3G20898
fragaria_vesca FvH4_3g28800
malus_domestica MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica Prupe.4G249800_v2.0.a1
pyrus_communis pycom03g13210 pycom11g16830
rosa_chinensis RchiOBHm_Chr5g0052211
rosa_laevigata RLG00000034836
rosa_multiflora Rmu_sc0006157.1_g000012
rosa_roxburghii Rroxscaffold_1G00028030
rosa_rugosa Rorug05G0274100
rosa_samantha Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana Rw5G032730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 1 cut(s) 378
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 115, 127
AcyI GRCGYC 1 cut(s) 275
AfeI AGCGCT 1 cut(s) 214
AfiI CCNNNNNNNGG 2 cut(s) 88, 349
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 67, 300
AluBI AGCT 1 cut(s) 355
AluI AGCT 1 cut(s) 355
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 208
AlwI GGATC 1 cut(s) 146
Aor51HI AGCGCT 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 115, 127
AspLEI GCGC 3 cut(s) 176, 215, 277
AspS9I GGNCC 1 cut(s) 191
AsuII TTCGAA 2 cut(s) 113, 125
AvaII GGWCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 16, 332
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 208
BfoI RGCGCY 2 cut(s) 216, 278
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 317
BisI GCNGC 1 cut(s) 172
BlsI GCNGC 1 cut(s) 173
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 6, 192, 276
BpiI GAAGAC 1 cut(s) 35
Bpu14I TTCGAA 2 cut(s) 113, 125
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 349
Bse118I RCCGGY 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 88, 349
BseRI GAGGAG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 2 cut(s) 251, 272
BslI CCNNNNNNNGG 2 cut(s) 88, 349
BsmAI GTCTC 1 cut(s) 208
Bsp119I TTCGAA 2 cut(s) 113, 125
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 3 cut(s) 151, 162, 317
BspACI CCGC 1 cut(s) 378
BspLI GGNNCC 3 cut(s) 6, 192, 276
BspPI GGATC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 362
BspT104I TTCGAA 2 cut(s) 113, 125
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 3 cut(s) 151, 162, 317
BssNI GRCGYC 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 362
BstACI GRCGYC 1 cut(s) 275
BstBI TTCGAA 2 cut(s) 113, 125
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 138
BstH2I RGCGCY 2 cut(s) 216, 278
BstHHI GCGC 3 cut(s) 176, 215, 277
BstKTI GATC 3 cut(s) 154, 165, 320
BstMAI GTCTC 1 cut(s) 208
BstMBI GATC 3 cut(s) 151, 162, 317
BstMWI GCNNNNNNNGC 3 cut(s) 11, 283, 335
BstNSI RCATGY 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuI GTATCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 138
BtgZI GCGATG 2 cut(s) 162, 310
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 3 cut(s) 176, 215, 277
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 191
CviAII CATG 1 cut(s) 264
CviJI RGCY 4 cut(s) 5, 76, 171, 355
CviKI_1 RGCY 4 cut(s) 5, 76, 171, 355
DinI GGCGCC 1 cut(s) 276
DpnI GATC 3 cut(s) 153, 164, 319
DpnII GATC 3 cut(s) 151, 162, 317
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Ecl136II GAGCTC 1 cut(s) 355
Eco24I GRGCYC 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 191
Eco47III AGCGCT 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 355
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 2 cut(s) 115, 127
EcoT38I GRGCYC 1 cut(s) 357
EgeI GGCGCC 1 cut(s) 276
EheI GGCGCC 1 cut(s) 276
FaeI CATG 1 cut(s) 267
FaiI YATR 1 cut(s) 265
FatI CATG 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 172
FriOI GRGCYC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 172
FspI TGCGCA 1 cut(s) 175
GlaI GCGC 3 cut(s) 175, 214, 276
GluI GCNGC 1 cut(s) 172
HaeII RGCGCY 2 cut(s) 216, 278
HapII CCGG 2 cut(s) 251, 272
HhaI GCGC 3 cut(s) 176, 215, 277
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 3 cut(s) 174, 213, 275
HinP1I GCGC 3 cut(s) 174, 213, 275
HpaII CCGG 2 cut(s) 251, 272
Hpy166II GTNNAC 2 cut(s) 82, 269
Hpy188I TCNGA 4 cut(s) 159, 237, 246, 315
Hpy188III TCNNGA 2 cut(s) 67, 194
Hpy8I GTNNAC 2 cut(s) 82, 269
HpyAV CCTTC 3 cut(s) 120, 132, 161
HpyCH4V TGCA 2 cut(s) 14, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 283, 335
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 3 cut(s) 174, 213, 275
KasI GGCGCC 1 cut(s) 274
Kzo9I GATC 3 cut(s) 151, 162, 317
LguI GCTCTTC 1 cut(s) 362
LmnI GCTCC 4 cut(s) 10, 224, 343, 352
LpnPI CCDG 4 cut(s) 207, 264, 285, 357
Lsp1109I GCAGC 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 259
MalI GATC 3 cut(s) 153, 164, 319
MboI GATC 3 cut(s) 151, 162, 317
MboII GAAGA 5 cut(s) 40, 82, 172, 349, 352
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 4 cut(s) 61, 102, 115, 127
Mly113I GGCGCC 1 cut(s) 275
MnlI CCTC 4 cut(s) 142, 145, 165, 181
MseI TTAA 1 cut(s) 391
MspI CCGG 2 cut(s) 251, 272
MwoI GCNNNNNNNGC 3 cut(s) 11, 283, 335
NarI GGCGCC 1 cut(s) 275
NdeII GATC 3 cut(s) 151, 162, 317
NlaIII CATG 1 cut(s) 267
NlaIV GGNNCC 3 cut(s) 6, 192, 276
NmuCI GTSAC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 175
NspI RCATGY 1 cut(s) 267
NspV TTCGAA 2 cut(s) 113, 125
PciI ACATGT 1 cut(s) 263
PciSI GCTCTTC 1 cut(s) 362
PkrI GCNGC 1 cut(s) 173
PluTI GGCGCC 1 cut(s) 278
PpuMI RGGWCCY 1 cut(s) 191
PscI ACATGT 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 6, 192, 276
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
PsuI RGATCY 1 cut(s) 317
SacI GAGCTC 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 391
SatI GCNGC 1 cut(s) 172
Sau3AI GATC 3 cut(s) 151, 162, 317
Sau96I GGNCC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 357
SetI ASST 2 cut(s) 235, 357
SfoI GGCGCC 1 cut(s) 276
SfuI TTCGAA 2 cut(s) 113, 125
SgrAI CRCCGGYG 1 cut(s) 271
SinI GGWCC 1 cut(s) 191
Sse9I AATT 4 cut(s) 61, 102, 115, 127
SsiI CCGC 1 cut(s) 378
SspDI GGCGCC 1 cut(s) 274
SstI GAGCTC 1 cut(s) 357
TaqI TCGA 3 cut(s) 113, 125, 165
TasI AATT 4 cut(s) 61, 102, 115, 127
Tru1I TTAA 1 cut(s) 391
Tru9I TTAA 1 cut(s) 391
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 171
Tsp45I GTSAC 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 115, 127
XceI RCATGY 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.