MD11G1192700.v1.1

cyclin-dependent protein kinase inhibitor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012953
Physical Location & Seq
Reverse (-)
27404987 .. 27405400
414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1192700.v1.1.491

Sequence Viewer

Length: 414 bp
ATGACTCCAGCTGCAAGAACAAGATCAAAGACAAAAACAACAAGAGAGGCAAAAACAAAAACAACCCATTTCAAGAAGAAGCTTGTCCGGCCAAAGACTACTACTCATCAAGAATTTGCATCTCCGAAGACTTCGCCTTCGAATTCATCCTCCGTGGTCTGCAACGATGCTCCGAAGATTGAAGGCGGCATAGATGAGTTCGAGGCTGTTGACGATGTGTCTACGGCAAGCGCCTGCTCCACTCCGAAAGCTCAGAGATTCCGGATACCGGAGATTGTAACCTGTCCACCGGCGCCTAAGAAGAAAAGAGCTATTTCATCAAATTGCTTGTTTCGGAGATCTCCAATCGCCTTCTTTGCTCCGCCGGACTTGGAGCTCTTCTTCTGCTTTGCAAATGGCGGTATTTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

9.82

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012953)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G51355 AT3G20898
fragaria_vesca FvH4_3g28800
malus_domestica MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica Prupe.4G249800_v2.0.a1
pyrus_communis pycom03g13210 pycom11g16830
rosa_chinensis RchiOBHm_Chr5g0052211
rosa_laevigata RLG00000034836
rosa_multiflora Rmu_sc0006157.1_g000012
rosa_roxburghii Rroxscaffold_1G00028030
rosa_rugosa Rorug05G0274100
rosa_samantha Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana Rw5G032730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 3 cut(s) 186, 362, 399
AcoI YGGCCR 1 cut(s) 89
AcsI RAATTY 2 cut(s) 113, 142
AcyI GRCGYC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 2 cut(s) 73, 182
AhdI GACNNNNNGTC 1 cut(s) 217
AluBI AGCT 5 cut(s) 11, 82, 251, 311, 376
AluI AGCT 5 cut(s) 11, 82, 251, 311, 376
Alw21I GWGCWC 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 261
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 2 cut(s) 113, 142
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
AspLEI GCGC 2 cut(s) 233, 295
AsuII TTCGAA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 292
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 378
BceAI ACGGC 1 cut(s) 240
BciVI GTATCC 1 cut(s) 258
BfoI RGCGCY 2 cut(s) 234, 296
BfuI GTATCC 1 cut(s) 258
BglII AGATCT 1 cut(s) 338
BisI GCNGC 2 cut(s) 12, 187
BlsI GCNGC 2 cut(s) 13, 188
BmeRI GACNNNNNGTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 294
BmsI GCATC 2 cut(s) 128, 157
BpiI GAAGAC 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 261, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse118I RCCGGY 1 cut(s) 289
BseAI TCCGGA 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 1 cut(s) 266
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 378
BsiSI CCGG 5 cut(s) 88, 262, 269, 290, 365
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 378
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 2 cut(s) 23, 338
BspACI CCGC 3 cut(s) 186, 362, 399
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 265
BspEI TCCGGA 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 294
BspQI GCTCTTC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 289
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 2 cut(s) 23, 338
BssNI GRCGYC 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 140
BstC8I GCNNGC 2 cut(s) 229, 235
BstDEI CTNAG 2 cut(s) 252, 297
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 146
BstH2I RGCGCY 2 cut(s) 234, 296
BstHHI GCGC 2 cut(s) 233, 295
BstKTI GATC 2 cut(s) 26, 341
BstMBI GATC 2 cut(s) 23, 338
BstMWI GCNNNNNNNGC 2 cut(s) 88, 356
BstV2I GAAGAC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 146
Cac8I GCNNGC 2 cut(s) 229, 235
CfoI GCGC 2 cut(s) 233, 295
Cfr10I RCCGGY 1 cut(s) 289
CviJI RGCY 7 cut(s) 11, 82, 91, 206, 251, 311, 376
CviKI_1 RGCY 7 cut(s) 11, 82, 91, 206, 251, 311, 376
DdeI CTNAG 2 cut(s) 252, 297
DinI GGCGCC 1 cut(s) 294
DpnI GATC 2 cut(s) 25, 340
DpnII GATC 2 cut(s) 23, 338
DriI GACNNNNNGTC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 89
Eam1104I CTCTTC 1 cut(s) 383
Eam1105I GACNNNNNGTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 378
EgeI GGCGCC 1 cut(s) 294
EheI GGCGCC 1 cut(s) 294
FaiI YATR 1 cut(s) 191
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 12, 187
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 2 cut(s) 12, 187
GlaI GCGC 2 cut(s) 232, 294
GluI GCNGC 2 cut(s) 12, 187
HaeII RGCGCY 2 cut(s) 234, 296
HaeIII GGCC 1 cut(s) 91
HapII CCGG 5 cut(s) 88, 262, 269, 290, 365
HhaI GCGC 2 cut(s) 233, 295
Hin1I GRCGYC 1 cut(s) 293
Hin6I GCGC 2 cut(s) 231, 293
HinP1I GCGC 2 cut(s) 231, 293
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 2 cut(s) 4, 258
HpaII CCGG 5 cut(s) 88, 262, 269, 290, 365
Hpy166II GTNNAC 3 cut(s) 211, 222, 287
Hpy188I TCNGA 5 cut(s) 126, 174, 246, 255, 336
Hpy188III TCNNGA 3 cut(s) 73, 110, 262
Hpy8I GTNNAC 3 cut(s) 211, 222, 287
HpyAV CCTTC 3 cut(s) 147, 176, 361
HpyCH4V TGCA 4 cut(s) 14, 119, 162, 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 88, 356
HpyF3I CTNAG 2 cut(s) 252, 297
Hsp92I GRCGYC 1 cut(s) 293
HspAI GCGC 2 cut(s) 231, 293
KasI GGCGCC 1 cut(s) 292
Kpn2I TCCGGA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 23, 338
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 4 cut(s) 175, 242, 364, 373
LpnPI CCDG 8 cut(s) 21, 101, 247, 275, 282, 295, 303, 378
LweI GCATC 2 cut(s) 128, 157
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 25, 340
MboI GATC 2 cut(s) 23, 338
MboII GAAGA 6 cut(s) 88, 139, 187, 313, 370, 373
MflI RGATCY 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 3 cut(s) 113, 142, 322
Mly113I GGCGCC 1 cut(s) 293
MnlI CCTC 3 cut(s) 40, 160, 196
MroI TCCGGA 1 cut(s) 261
MseI TTAA 1 cut(s) 412
MspA1I CMGCKG 1 cut(s) 11
MspI CCGG 5 cut(s) 88, 262, 269, 290, 365
MwoI GCNNNNNNNGC 2 cut(s) 88, 356
NarI GGCGCC 1 cut(s) 293
NdeII GATC 2 cut(s) 23, 338
NlaIV GGNNCC 1 cut(s) 294
NspV TTCGAA 1 cut(s) 140
PciSI GCTCTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 258
PkrI GCNGC 2 cut(s) 13, 188
PluTI GGCGCC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 378
PspN4I GGNNCC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 338
PvuII CAGCTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 2 cut(s) 12, 187
Sau3AI GATC 2 cut(s) 23, 338
SduI GDGCHC 1 cut(s) 378
SetI ASST 6 cut(s) 13, 84, 253, 284, 313, 378
SfaNI GCATC 2 cut(s) 128, 157
SfoI GGCGCC 1 cut(s) 294
SfuI TTCGAA 1 cut(s) 140
SgrAI CRCCGGYG 1 cut(s) 289
Sse9I AATT 3 cut(s) 113, 142, 322
SsiI CCGC 3 cut(s) 186, 362, 399
SspDI GGCGCC 1 cut(s) 292
SstI GAGCTC 1 cut(s) 378
TaqI TCGA 2 cut(s) 140, 201
TasI AATT 3 cut(s) 113, 142, 322
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 2 cut(s) 135, 306
TspGWI ACGGA 1 cut(s) 142
XapI RAATTY 2 cut(s) 113, 142
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.