Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0012953

Physical Location & Seq

Genomic Coordinates Reverse (-)

57188308 .. 57190026

Gene Structure 1719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG346600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTCCCTCTGGAAGAACAAGAGCAAGCAGGCCTAAGACAGCAAGAAAGGCAAGAAGAACCATTTTCAAGAAGCCGGTAGTTGCCAAGCCAAAGCAAAATATTCAAAAGACGCCTCCTCCTCCGAATTCACCTTCCAAGTCCTCCTCCTCTTTGATCTCCGGTGGCCTTCCGCAGACCGAAAGCATAGATTTCGAGGCAGTTGTTCATCATGATGTCTCTGCAACTTCTAGCCCTTGCTCCACACCAAAAGCTCAGAGATATCGGATACCCCAGATTGTGTCATGTCCTCCAGCACCCAAGAAGCAAAGAGTGAATTCAAATTGCTTGTTTCGGAGATCTCCAATCGCCTTCTTCGCTCCACCGGATTTGGAGCTCTTCTTCTACTTCGCAAATCGCGGTATTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

11.03

Isoelectric Point (pI)

71.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51355 AT3G20898
fragaria_vesca	FvH4_3g28800
malus_domestica	MD03G1174700.v1.1 MD11G1192700.v1.1
prunus_persica	Prupe.4G249800_v2.0.a1
pyrus_communis	pycom03g13210 pycom11g16830
rosa_chinensis	RchiOBHm_Chr5g0052211
rosa_laevigata	RLG00000034836
rosa_multiflora	Rmu_sc0006157.1_g000012
rosa_roxburghii	Rroxscaffold_1G00028030
rosa_rugosa	Rorug05G0274100
rosa_samantha	Rh5AG346600 Rh5BG357200 Rh5CG382800 Rh5DG372700
rosa_wichuraiana	Rw5G032730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	399
AciI	CCGC	2 cut(s)	173, 399
AcsI	RAATTY	2 cut(s)	127, 316
AcyI	GRCGYC	1 cut(s)	113
AgsI	TTSAA	3 cut(s)	70, 107, 321
AluBI	AGCT	2 cut(s)	254, 376
AluI	AGCT	2 cut(s)	254, 376
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	223
AoxI	GGCC	2 cut(s)	32, 166
ApoI	RAATTY	2 cut(s)	127, 316
AsuHPI	GGTGA	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciVI	GTATCC	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	261
BglII	AGATCT	1 cut(s)	338
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	113
BsaWI	WCCGGW	2 cut(s)	161, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse118I	RCCGGY	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	269
BseRI	GAGGAG	4 cut(s)	108, 111, 136, 139
Bsh1236I	CGCG	1 cut(s)	399
BshFI	GGCC	2 cut(s)	34, 168
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	77, 162, 365
BsmAI	GTCTC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	34, 168
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	156, 338
BspACI	CCGC	2 cut(s)	173, 399
BspANI	GGCC	2 cut(s)	34, 168
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	399
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	6
BspQI	GCTCTTC	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	2 cut(s)	156, 338
BssNI	GRCGYC	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	2 cut(s)	36, 255
BstFNI	CGCG	1 cut(s)	399
BstKTI	GATC	2 cut(s)	159, 341
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	156, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 356
BstUI	CGCG	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	338
BstYI	RGATCY	1 cut(s)	338
BsuI	GTATCC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	34, 168
Cac8I	GCNNGC	2 cut(s)	28, 32
CciI	TCATGA	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	76
CseI	GACGC	1 cut(s)	121
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	2 cut(s)	212, 285
CviJI	RGCY	8 cut(s)	5, 34, 76, 91, 168, 234, 254, 376
CviKI_1	RGCY	8 cut(s)	5, 34, 76, 91, 168, 234, 254, 376
DdeI	CTNAG	2 cut(s)	36, 255
DpnI	GATC	2 cut(s)	158, 340
DpnII	GATC	2 cut(s)	156, 338
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	378
Eco32I	GATATC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	376
EcoICRI	GAGCTC	1 cut(s)	376
EcoRI	GAATTC	2 cut(s)	127, 316
EcoRV	GATATC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	378
FaeI	CATG	2 cut(s)	215, 288
FaiI	YATR	3 cut(s)	188, 213, 286
FatI	CATG	2 cut(s)	211, 284
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	231
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	34, 168
HapII	CCGG	3 cut(s)	77, 162, 365
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	215, 288
HpaII	CCGG	3 cut(s)	77, 162, 365
HphI	GGTGA	1 cut(s)	123
Hpy188I	TCNGA	4 cut(s)	126, 258, 267, 336
Hpy188III	TCNNGA	3 cut(s)	12, 70, 212
HpyAV	CCTTC	3 cut(s)	144, 179, 361
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 356
HpyF3I	CTNAG	2 cut(s)	36, 255
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	215, 288
Kzo9I	GATC	2 cut(s)	156, 338
LguI	GCTCTTC	1 cut(s)	383
LmnI	GCTCC	4 cut(s)	10, 245, 364, 373
LpnPI	CCDG	6 cut(s)	16, 90, 175, 287, 306, 378
MaeI	CTAG	1 cut(s)	231
MalI	GATC	2 cut(s)	158, 340
MboI	GATC	2 cut(s)	156, 338
MboII	GAAGA	5 cut(s)	27, 69, 346, 370, 373
MflI	RGATCY	1 cut(s)	338
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	3 cut(s)	127, 316, 322
MnlI	CCTC	9 cut(s)	19, 126, 129, 132, 154, 157, 160, 190, 300
MseI	TTAA	1 cut(s)	412
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	3 cut(s)	77, 162, 365
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	2 cut(s)	50, 356
NdeII	GATC	2 cut(s)	156, 338
NlaIII	CATG	2 cut(s)	215, 288
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	211
PceI	AGGCCT	1 cut(s)	34
PciSI	GCTCTTC	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	338
RseI	CAYNNNNRTG	1 cut(s)	213
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	412
Sau3AI	GATC	2 cut(s)	156, 338
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	3 cut(s)	136, 256, 378
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	127, 316, 322
SseBI	AGGCCT	1 cut(s)	34
SsiI	CCGC	2 cut(s)	173, 399
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	378
StuI	AGGCCT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	195
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	3 cut(s)	127, 316, 322
Tru1I	TTAA	1 cut(s)	412
Tru9I	TTAA	1 cut(s)	412
TspDTI	ATGAA	1 cut(s)	197
XapI	RAATTY	2 cut(s)	127, 316
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.