AT3G22970

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013897
Physical Location & Seq
Forward (+)
8152038 .. 8154149
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22970.2

Sequence Viewer

Length: 1113 bp
ATGCCATTTACGATGAAGATCCAACCGATTGATATCGATTCTTCACCAACCGTAGCTAGAGCTGAATCAGGAAACAAACCGGTGCTCAAATCTCGTCTCAAACGTTTGTTTGATCGGCCGTTTACAAACGTATTGAGAAACTCAACAACTACAACCACCGAGAAACCATTCGTTGTCACCGGTGGTGAAGTTCAATGCGGCGGAGTAGTGACGGAGTTCGAGCCGAGTTCTGTTTGCTTAGCGAAGATGGTACAGAACTTCATTGAAGAAAACAACGAGAAACAAGCTAAATGTGGACGTAATCGTTGTAATTGCTTTAACGGCAACAACGATGGTTCTTCCGATGATGAATCAGATCTATTCGGTGGTTCAATCGACGGTTGCGACGCTTCTGATCATCTCAAGAGTTTGATTCCGTGCACAACCGTCGGAGAGAGGAATCTGTTAGCCGACGCGGCGAAGATTGTAGATAAGAACAAATCGGTGAAACGAAAAGACGATATGAAGAAGATCGTCAATGAAGGACTCTTATCACTTAATTACAATTCTTCAATCTGCAAATCAAAATGGGATAAATCTCCTTCGTTCCCAGCTGGTGAATACGAGTACATAGATGTGATAATCGGAGAAGAAAGGTTAATAATCGATGTAGATTTCCGATCAGAGTTCGATATAGCGAGACAAACGAGTGGTTACAAGGTGTTGCTTCAATCTCTACCGTTCATTTTCGTCGGAAAATCTGATCGGTTAAGTCAGATCGTGTTTTTGATATCGGAGGCGGCGAAACAGAGTTTGAAGAAGAAAGGAATGCCTTTTCCTCCGTGGAGGAAAGCTGAGTACATGCGATCTAAATGGCTCTCTTCTTATACGCGAGCTTCCGTTGTTGTTGTCGATGAGACGGTGACGGTGACGGATGTTACGGCGGCGGATGCGGCGGTGGAGAAGGAGGTGGATAGTGTAGAGATTGAGCTGGTTTTTGAGGAGAAATGTTTATCTCCGAGAGTGATTGTTAATTCTTCCTCCTCTCCAACCGACGGCGATGATGACGTGGCGGTGGAGAGAGAAGTGAAGGCTGTCACCGGATTAGCTTCACTCTTTAAGGAAAAGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

370

Amino Acids

40.9

Weight (kDa)

5.28

Isoelectric Point (pI)

44.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 23 - 180 7.8e-63 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22970 AT3G22970
fragaria_vesca FvH4_4g01830
malus_domestica MD13G1202800.v1.1
prunus_persica Prupe.1G024900_v2.0.a1
pyrus_communis pycom13g17580 pycom16g17110
rosa_chinensis RchiOBHm_Chr4g0388891
rosa_laevigata RLG00000010016
rosa_multiflora Rmu_sc0000697.1_g000004
rosa_roxburghii Rroxscaffold_5G00335200
rosa_rugosa Rorug03G0320800
rosa_samantha Rh4AG025300 Rh4BG018500 Rh4CG028300 Rh4DG019000
rosa_wichuraiana Rw4G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 455, 871
AciI CCGC 9 cut(s) 198, 201, 455, 779, 923, 926, 932, 935, 1052
AclI AACGTT 1 cut(s) 103
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 116
AfaI GTAC 3 cut(s) 252, 608, 839
AfiI CCNNNNNNNGG 1 cut(s) 1034
AgeI ACCGGT 2 cut(s) 79, 179
AgsI TTSAA 6 cut(s) 194, 266, 372, 552, 710, 796
AjiI CACGTC 1 cut(s) 1048
AluBI AGCT 8 cut(s) 56, 62, 287, 593, 833, 875, 970, 1088
AluI AGCT 8 cut(s) 56, 62, 287, 593, 833, 875, 970, 1088
Alw21I GWGCWC 2 cut(s) 87, 422
Alw26I GTCTC 3 cut(s) 101, 673, 890
Alw44I GTGCAC 1 cut(s) 418
AlwI GGATC 1 cut(s) 13
AoxI GGCC 1 cut(s) 116
ApaLI GTGCAC 1 cut(s) 418
AsiGI ACCGGT 2 cut(s) 79, 179
Asp700I GAANNNNTTC 1 cut(s) 167
AsuHPI GGTGA 8 cut(s) 36, 169, 197, 496, 608, 913, 919, 1069
BaeGI GKGCMC 1 cut(s) 422
Bbv12I GWGCWC 2 cut(s) 87, 422
BccI CCATC 2 cut(s) 241, 326
BceAI ACGGC 4 cut(s) 103, 337, 936, 1051
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 3 cut(s) 101, 673, 890
BfaI CTAG 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 455
BglII AGATCT 1 cut(s) 355
BisI GCNGC 5 cut(s) 199, 456, 780, 924, 933
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 5 cut(s) 200, 457, 781, 925, 934
BmgBI CACGTC 1 cut(s) 1048
BmsI GCATC 1 cut(s) 919
Bpu1102I GCTNAGC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 386
Bsa29I ATCGAT 2 cut(s) 36, 645
BsaBI GATNNNNATC 2 cut(s) 17, 32
BsaJI CCNNGG 1 cut(s) 821
BsaWI WCCGGW 3 cut(s) 79, 179, 1079
Bsc4I CCNNNNNNNGG 1 cut(s) 1034
Bse118I RCCGGY 2 cut(s) 79, 179
Bse8I GATNNNNATC 2 cut(s) 17, 32
BseCI ATCGAT 2 cut(s) 36, 645
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 2 cut(s) 919, 934
BseJI GATNNNNATC 2 cut(s) 17, 32
BseLI CCNNNNNNNGG 1 cut(s) 1034
BseMII CTCAG 1 cut(s) 825
BseRI GAGGAG 2 cut(s) 995, 1012
BseSI GKGCMC 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 2 cut(s) 455, 871
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 118
BshTI ACCGGT 2 cut(s) 79, 179
BshVI ATCGAT 2 cut(s) 36, 645
BsiEI CGRYCG 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 87, 422
BsiSI CCGG 3 cut(s) 80, 180, 1080
BslI CCNNNNNNNGG 1 cut(s) 1034
BsmAI GTCTC 3 cut(s) 101, 673, 890
BsmBI CGTCTC 2 cut(s) 101, 890
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 2 cut(s) 87, 422
Bsp143I GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
Bsp1720I GCTNAGC 1 cut(s) 238
BspACI CCGC 9 cut(s) 198, 201, 455, 779, 923, 926, 932, 935, 1052
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 826
BspDI ATCGAT 2 cut(s) 36, 645
BspFNI CGCG 2 cut(s) 455, 871
BspPI GGATC 1 cut(s) 13
BsrFI RCCGGY 2 cut(s) 79, 179
BssAI RCCGGY 2 cut(s) 79, 179
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
Bst4CI ACNGT 6 cut(s) 52, 380, 427, 720, 901, 907
Bst6I CTCTTC 1 cut(s) 865
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 2 cut(s) 238, 834
BstDSI CCRYGG 1 cut(s) 821
BstF5I GGATG 2 cut(s) 919, 934
BstFNI CGCG 2 cut(s) 455, 871
BstKTI GATC 9 cut(s) 21, 115, 358, 397, 513, 662, 745, 759, 848
BstMAI GTCTC 3 cut(s) 101, 673, 890
BstMBI GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
BstMCI CGRYCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 4 cut(s) 321, 455, 929, 932
BstNSI RCATGY 1 cut(s) 844
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 2 cut(s) 455, 871
BstX2I RGATCY 2 cut(s) 18, 355
BstYI RGATCY 2 cut(s) 18, 355
BstZI CGGCCG 1 cut(s) 116
Bsu15I ATCGAT 2 cut(s) 36, 645
BsuRI GGCC 1 cut(s) 118
BsuTUI ATCGAT 2 cut(s) 36, 645
BtgI CCRYGG 1 cut(s) 821
BtgZI GCGATG 1 cut(s) 1053
BtrI CACGTC 1 cut(s) 1048
BtsCI GGATG 2 cut(s) 919, 934
Cac8I GCNNGC 1 cut(s) 873
Cfr10I RCCGGY 2 cut(s) 79, 179
ClaI ATCGAT 2 cut(s) 36, 645
CseI GACGC 2 cut(s) 395, 461
Csp6I GTAC 3 cut(s) 251, 607, 838
CspAI ACCGGT 2 cut(s) 79, 179
CviAII CATG 1 cut(s) 841
CviQI GTAC 3 cut(s) 251, 607, 838
DdeI CTNAG 2 cut(s) 238, 834
DpnI GATC 9 cut(s) 20, 114, 357, 396, 512, 661, 744, 758, 847
DpnII GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
EaeI YGGCCR 1 cut(s) 116
EagI CGGCCG 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 865
EarI CTCTTC 1 cut(s) 865
EciI GGCGGA 2 cut(s) 216, 941
EclXI CGGCCG 1 cut(s) 116
Eco32I GATATC 2 cut(s) 34, 771
Eco52I CGGCCG 1 cut(s) 116
EcoRV GATATC 2 cut(s) 34, 771
Esp3I CGTCTC 2 cut(s) 101, 890
FaeI CATG 1 cut(s) 844
FaiI YATR 5 cut(s) 503, 611, 674, 842, 867
FatI CATG 1 cut(s) 840
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 199, 456, 780, 924, 933
FokI GGATG 2 cut(s) 926, 941
Fsp4HI GCNGC 5 cut(s) 199, 456, 780, 924, 933
FspBI CTAG 1 cut(s) 57
GluI GCNGC 5 cut(s) 199, 456, 780, 924, 933
GsaI CCCAGC 1 cut(s) 593
HaeIII GGCC 1 cut(s) 118
HapII CCGG 3 cut(s) 80, 180, 1080
HgaI GACGC 2 cut(s) 395, 461
Hin1II CATG 1 cut(s) 844
HinfI GANTC 6 cut(s) 38, 65, 350, 412, 439, 525
HpaII CCGG 3 cut(s) 80, 180, 1080
HphI GGTGA 8 cut(s) 36, 169, 197, 496, 608, 913, 919, 1069
Hpy166II GTNNAC 3 cut(s) 123, 296, 420
Hpy188III TCNNGA 2 cut(s) 69, 403
Hpy8I GTNNAC 3 cut(s) 123, 296, 420
Hpy99I CGWCG 6 cut(s) 380, 389, 431, 455, 734, 1037
HpyAV CCTTC 4 cut(s) 515, 591, 937, 1063
HpyCH4III ACNGT 6 cut(s) 52, 380, 427, 720, 901, 907
HpyCH4IV ACGT 4 cut(s) 103, 129, 298, 1047
HpyCH4V TGCA 2 cut(s) 420, 558
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 455, 929, 932
HpyF3I CTNAG 2 cut(s) 238, 834
HpySE526I ACGT 4 cut(s) 103, 129, 298, 1047
Hsp92II CATG 1 cut(s) 844
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
LpnPI CCDG 7 cut(s) 54, 93, 193, 579, 603, 956, 1093
LweI GCATC 1 cut(s) 919
MaeI CTAG 1 cut(s) 57
MaeII ACGT 4 cut(s) 103, 129, 298, 1047
MaeIII GTNAC 7 cut(s) 175, 208, 692, 901, 907, 916, 1075
MalI GATC 9 cut(s) 20, 114, 357, 396, 512, 661, 744, 758, 847
MboI GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
MflI RGATCY 2 cut(s) 18, 355
MhlI GDGCHC 2 cut(s) 87, 422
MluCI AATT 4 cut(s) 310, 538, 544, 1012
MlyI GAGTC 1 cut(s) 519
MmeI TCCRAC 4 cut(s) 46, 409, 712, 1052
MnlI CCTC 8 cut(s) 429, 769, 819, 828, 940, 973, 1030, 1033
MroXI GAANNNNTTC 1 cut(s) 167
MseI TTAA 6 cut(s) 318, 537, 638, 749, 1011, 1098
MslI CAYNNNNRTG 1 cut(s) 614
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 3 cut(s) 80, 180, 1080
Mva1269I GAATGC 1 cut(s) 813
MvnI CGCG 2 cut(s) 455, 871
MwoI GCNNNNNNNGC 4 cut(s) 321, 455, 929, 932
NdeII GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
NlaIII CATG 1 cut(s) 844
NmeAIII GCCGAG 1 cut(s) 249
NmuCI GTSAC 5 cut(s) 175, 208, 901, 907, 1075
NspI RCATGY 1 cut(s) 844
PcsI WCGNNNNNNNCGW 4 cut(s) 100, 327, 381, 779
PctI GAATGC 1 cut(s) 813
PdmI GAANNNNTTC 1 cut(s) 167
PfeI GAWTC 5 cut(s) 38, 65, 350, 412, 439
PinAI ACCGGT 2 cut(s) 79, 179
PkrI GCNGC 5 cut(s) 200, 457, 781, 925, 934
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
Psp1406I AACGTT 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 589
PsuI RGATCY 2 cut(s) 18, 355
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 252, 608, 839
RsaNI GTAC 3 cut(s) 251, 607, 838
RseI CAYNNNNRTG 1 cut(s) 614
SaqAI TTAA 6 cut(s) 318, 537, 638, 749, 1011, 1098
SatI GCNGC 5 cut(s) 199, 456, 780, 924, 933
Sau3AI GATC 9 cut(s) 18, 112, 355, 394, 510, 659, 742, 756, 845
SchI GAGTC 1 cut(s) 519
SduI GDGCHC 2 cut(s) 87, 422
SfaNI GCATC 1 cut(s) 919
SgrAI CRCCGGYG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 4 cut(s) 310, 538, 544, 1012
SsiI CCGC 9 cut(s) 198, 201, 455, 779, 923, 926, 932, 935, 1052
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 6 cut(s) 52, 380, 427, 720, 901, 907
TaiI ACGT 4 cut(s) 106, 132, 301, 1050
TaqI TCGA 6 cut(s) 36, 219, 375, 645, 669, 891
TasI AATT 4 cut(s) 310, 538, 544, 1012
TatI WGTACW 2 cut(s) 606, 837
TauI GCSGC 5 cut(s) 201, 458, 782, 926, 935
TfiI GAWTC 5 cut(s) 38, 65, 350, 412, 439
Tru1I TTAA 6 cut(s) 318, 537, 638, 749, 1011, 1098
Tru9I TTAA 6 cut(s) 318, 537, 638, 749, 1011, 1098
TseFI GTSAC 5 cut(s) 175, 208, 901, 907, 1075
Tsp45I GTSAC 5 cut(s) 175, 208, 901, 907, 1075
TspDTI ATGAA 6 cut(s) 29, 250, 363, 518, 534, 712
TspGWI ACGGA 5 cut(s) 227, 405, 810, 868, 926
VneI GTGCAC 1 cut(s) 418
XceI RCATGY 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 167
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.