Rorug03G0320800

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013897
Physical Location & Seq
Reverse (-)
34730791 .. 34731846
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0320800.1

Sequence Viewer

Length: 498 bp
ATGGAGAACATGTTGGGTCTGTTGAGAATTCATATCCAAAGAGGAGTGAACCTTGCCGTCAGAGACATGAGAAGCAGCGACCCTTATCTCATTGTCAGAATGGGCAAGCAGAAGCTAAAGACTCGTGTAGTGAAGAAGAGCGTAAATCCTGAGTGGAATGAACAATTGACTCTTTCAATTGCTGATCCAAATCTTCCAATCCTTGTCTCTGTGTATGACAAGGATACATTTAGTTTTGATGACAAAATGGGGGATGCAGAGTTTGAGATTGGTCCATTCATTAAAGCCTTGAAGATGGGTTTCCAAGGCCTTGAAGATGGAGCCATAATTTCTAAAGTGCAGATGAACAAGCAAAACTGTCTAGCTGAAGAGAGCTGCATTATTTACTCCGAAGGCAAACTTGTACAGAACATGGTTCTCAGACTCAGAAATGTGGAGTGCGGGGAAGTGGAACTCCAATTGCAGTGGATTGATGTACCTAGTTCTAGGGGTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

5.91

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 6 - 92 2.9e-22 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22970 AT3G22970
fragaria_vesca FvH4_4g01830
malus_domestica MD13G1202800.v1.1
prunus_persica Prupe.1G024900_v2.0.a1
pyrus_communis pycom13g17580 pycom16g17110
rosa_chinensis RchiOBHm_Chr4g0388891
rosa_laevigata RLG00000010016
rosa_multiflora Rmu_sc0000697.1_g000004
rosa_roxburghii Rroxscaffold_5G00335200
rosa_rugosa Rorug03G0320800
rosa_samantha Rh4AG025300 Rh4BG018500 Rh4CG028300 Rh4DG019000
rosa_wichuraiana Rw4G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 441
AclWI GGATC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 1 cut(s) 387
AfaI GTAC 2 cut(s) 405, 477
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 3 cut(s) 177, 292, 314
AluBI AGCT 3 cut(s) 115, 365, 375
AluI AGCT 3 cut(s) 115, 365, 375
Alw26I GTCTC 2 cut(s) 57, 211
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 307
ApeKI GCWGC 2 cut(s) 75, 375
ApoI RAATTY 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BauI CACGAG 1 cut(s) 123
BbvI GCAGC 2 cut(s) 87, 362
BccI CCATC 2 cut(s) 289, 311
BceAI ACGGC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 57, 211
BfaI CTAG 3 cut(s) 362, 480, 486
BfmI CTRYAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 2 cut(s) 76, 376
BlsI GCNGC 2 cut(s) 77, 377
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 304
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 259
BseJI GATNNNNATC 1 cut(s) 189
BseMII CTCAG 3 cut(s) 141, 433, 439
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 2 cut(s) 87, 362
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 1 cut(s) 309
BsmAI GTCTC 2 cut(s) 57, 211
BsnI GGCC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 309
BspCNI CTCAG 3 cut(s) 142, 432, 438
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 131
BsrGI TGTACA 1 cut(s) 403
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 1 cut(s) 184
BssSI CACGAG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 304
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 131, 363
BstAUI TGTACA 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 150, 419, 425
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 2 cut(s) 57, 211
BstMBI GATC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 87, 362
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 404, 476
CspCI CAANNNNNGTGG 2 cut(s) 446, 481
CviAII CATG 3 cut(s) 10, 67, 412
CviJI RGCY 6 cut(s) 115, 287, 309, 323, 365, 375
CviKI_1 RGCY 6 cut(s) 115, 287, 309, 323, 365, 375
CviQI GTAC 2 cut(s) 404, 476
DdeI CTNAG 3 cut(s) 150, 419, 425
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 131, 363
EarI CTCTTC 2 cut(s) 131, 363
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 3 cut(s) 13, 70, 415
FaiI YATR 7 cut(s) 11, 33, 68, 216, 326, 413, 496
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 3 cut(s) 9, 66, 411
FauI CCCGC 1 cut(s) 434
Fnu4HI GCNGC 2 cut(s) 76, 376
FokI GGATG 1 cut(s) 266
Fsp4HI GCNGC 2 cut(s) 76, 376
FspBI CTAG 3 cut(s) 362, 480, 486
GluI GCNGC 2 cut(s) 76, 376
HaeIII GGCC 1 cut(s) 309
Hin1II CATG 3 cut(s) 13, 70, 415
HinfI GANTC 3 cut(s) 121, 169, 423
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 62, 98, 391, 422, 428
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 257, 340, 378, 463
HpyF3I CTNAG 3 cut(s) 150, 419, 425
Hsp92II CATG 3 cut(s) 13, 70, 415
Kzo9I GATC 1 cut(s) 184
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 1 cut(s) 162
Lsp1109I GCAGC 2 cut(s) 87, 362
LweI GCATC 1 cut(s) 244
MaeI CTAG 3 cut(s) 362, 480, 486
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 6 cut(s) 145, 148, 185, 304, 326, 380
MfeI CAATTG 3 cut(s) 164, 177, 458
MluCI AATT 5 cut(s) 27, 164, 177, 327, 458
MlyI GAGTC 3 cut(s) 115, 163, 417
MnlI CCTC 1 cut(s) 35
MseI TTAA 1 cut(s) 282
MunI CAATTG 3 cut(s) 164, 177, 458
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 13, 70, 415
NlaIV GGNNCC 1 cut(s) 322
NspI RCATGY 1 cut(s) 13
PceI AGGCCT 1 cut(s) 309
PciI ACATGT 1 cut(s) 9
PciSI GCTCTTC 1 cut(s) 131
PkrI GCNGC 2 cut(s) 77, 377
PleI GAGTC 3 cut(s) 115, 163, 417
PpsI GAGTC 3 cut(s) 115, 163, 417
PscI ACATGT 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 272
RsaI GTAC 2 cut(s) 405, 477
RsaNI GTAC 2 cut(s) 404, 476
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 76, 376
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 3 cut(s) 115, 163, 417
SetI ASST 5 cut(s) 54, 117, 367, 377, 481
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 272
Sse9I AATT 5 cut(s) 27, 164, 177, 327, 458
SseBI AGGCCT 1 cut(s) 309
SsiI CCGC 1 cut(s) 441
SspMI CTAG 3 cut(s) 362, 480, 486
StuI AGGCCT 1 cut(s) 309
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 1 cut(s) 359
TasI AATT 5 cut(s) 27, 164, 177, 327, 458
TatI WGTACW 1 cut(s) 403
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 470
TseI GCWGC 2 cut(s) 75, 375
TspDTI ATGAA 4 cut(s) 20, 174, 268, 359
TspRI CASTG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 27
XceI RCATGY 1 cut(s) 13
XspI CTAG 3 cut(s) 362, 480, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.