PDDEXK-like family of unknown function
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22970 AT3G22970 |
| fragaria_vesca | FvH4_4g01830 |
| malus_domestica | MD13G1202800.v1.1 |
| prunus_persica | Prupe.1G024900_v2.0.a1 |
| pyrus_communis | pycom13g17580 pycom16g17110 |
| rosa_chinensis | RchiOBHm_Chr4g0388891 |
| rosa_laevigata | RLG00000010016 |
| rosa_multiflora | Rmu_sc0000697.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00335200 |
| rosa_rugosa | Rorug03G0320800 |
| rosa_samantha | Rh4AG025300 Rh4BG018500 Rh4CG028300 Rh4DG019000 |
| rosa_wichuraiana | Rw4G001820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 620 |
| Acc16I | TGCGCA | 1 cut(s) | 153 |
| Acc36I | ACCTGC | 1 cut(s) | 620 |
| AccB1I | GGYRCC | 1 cut(s) | 956 |
| AccII | CGCG | 2 cut(s) | 97, 968 |
| AclWI | GGATC | 4 cut(s) | 13, 74, 527, 732 |
| AcoI | YGGCCR | 4 cut(s) | 237, 328, 808, 1098 |
| AcsI | RAATTY | 4 cut(s) | 46, 283, 722, 1105 |
| AcuI | CTGAAG | 1 cut(s) | 872 |
| AcyI | GRCGYC | 1 cut(s) | 444 |
| AfaI | GTAC | 2 cut(s) | 659, 896 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 326, 953, 1096 |
| AgeI | ACCGGT | 1 cut(s) | 82 |
| AgsI | TTSAA | 3 cut(s) | 32, 91, 417 |
| AjnI | CCWGG | 2 cut(s) | 501, 1114 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 922, 954, 1095, 1127 |
| AluBI | AGCT | 3 cut(s) | 255, 372, 385 |
| AluI | AGCT | 3 cut(s) | 255, 372, 385 |
| Alw21I | GWGCWC | 2 cut(s) | 257, 387 |
| Alw26I | GTCTC | 4 cut(s) | 490, 809, 823, 968 |
| AlwI | GGATC | 4 cut(s) | 13, 74, 527, 732 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 850 |
| Ama87I | CYCGRG | 2 cut(s) | 127, 1037 |
| AoxI | GGCC | 7 cut(s) | 60, 237, 328, 747, 808, 1008, 1098 |
| ApeKI | GCWGC | 9 cut(s) | 187, 190, 310, 339, 772, 836, 1066, 1135, 1201 |
| ApoI | RAATTY | 4 cut(s) | 46, 283, 722, 1105 |
| AsiGI | ACCGGT | 1 cut(s) | 82 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 145 |
| AspLEI | GCGC | 2 cut(s) | 154, 905 |
| AspS9I | GGNCC | 3 cut(s) | 61, 747, 799 |
| AsuC2I | CCSGG | 2 cut(s) | 64, 1189 |
| AsuHPI | GGTGA | 5 cut(s) | 88, 665, 1043, 1064, 1186 |
| AvaI | CYCGRG | 2 cut(s) | 127, 1037 |
| AvaII | GGWCC | 1 cut(s) | 799 |
| BanI | GGYRCC | 1 cut(s) | 956 |
| BanII | GRGCYC | 2 cut(s) | 257, 387 |
| BbsI | GAAGAC | 1 cut(s) | 79 |
| Bbv12I | GWGCWC | 2 cut(s) | 257, 387 |
| BbvI | GCAGC | 9 cut(s) | 199, 202, 322, 326, 759, 848, 1078, 1147, 1188 |
| BccI | CCATC | 5 cut(s) | 209, 268, 670, 830, 1099 |
| BceAI | ACGGC | 4 cut(s) | 166, 528, 743, 920 |
| BciT130I | CCWGG | 2 cut(s) | 503, 1116 |
| BcnI | CCSGG | 2 cut(s) | 64, 1189 |
| BcoDI | GTCTC | 4 cut(s) | 490, 809, 823, 968 |
| BfoI | RGCGCY | 1 cut(s) | 906 |
| BfuAI | ACCTGC | 1 cut(s) | 620 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 236 |
| Bme1390I | CCNGG | 4 cut(s) | 64, 503, 1116, 1189 |
| Bme18I | GGWCC | 1 cut(s) | 799 |
| BmeT110I | CYCGRG | 2 cut(s) | 127, 1037 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 747, 799 |
| BmiI | GGNNCC | 3 cut(s) | 335, 748, 958 |
| BmrFI | CCNGG | 4 cut(s) | 64, 503, 1116, 1189 |
| BmrI | ACTGGG | 1 cut(s) | 753 |
| BmsI | GCATC | 1 cut(s) | 1205 |
| BmuI | ACTGGG | 1 cut(s) | 753 |
| BpiI | GAAGAC | 1 cut(s) | 79 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 239, 271, 1066, 1098 |
| BpmI | CTGGAG | 1 cut(s) | 1068 |
| Bpu10I | CCTNAGC | 1 cut(s) | 101 |
| BpuEI | CTTGAG | 1 cut(s) | 1190 |
| BpuMI | CCSGG | 2 cut(s) | 64, 1189 |
| Bsa29I | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BsaBI | GATNNNNATC | 3 cut(s) | 17, 32, 704 |
| BsaHI | GRCGYC | 1 cut(s) | 444 |
| BsaI | GGTCTC | 1 cut(s) | 968 |
| BsaJI | CCNNGG | 3 cut(s) | 592, 878, 1005 |
| BsaWI | WCCGGW | 2 cut(s) | 82, 425 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 210, 240, 590, 620, 620, 650 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 326, 953, 1096 |
| Bse118I | RCCGGY | 5 cut(s) | 58, 82, 650, 1096, 1141 |
| Bse1I | ACTGG | 2 cut(s) | 748, 1085 |
| Bse3DI | GCAATG | 1 cut(s) | 370 |
| Bse8I | GATNNNNATC | 3 cut(s) | 17, 32, 704 |
| BseBI | CCWGG | 2 cut(s) | 503, 1116 |
| BseCI | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BseDI | CCNNGG | 3 cut(s) | 592, 878, 1005 |
| BseGI | GGATG | 1 cut(s) | 220 |
| BseJI | GATNNNNATC | 3 cut(s) | 17, 32, 704 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 326, 953, 1096 |
| BseMI | GCAATG | 1 cut(s) | 370 |
| BseMII | CTCAG | 4 cut(s) | 115, 165, 1033, 1062 |
| BseNI | ACTGG | 2 cut(s) | 748, 1085 |
| BseRI | GAGGAG | 1 cut(s) | 412 |
| BseX3I | CGGCCG | 1 cut(s) | 1098 |
| BseXI | GCAGC | 9 cut(s) | 199, 202, 322, 326, 759, 848, 1078, 1147, 1188 |
| Bsh1236I | CGCG | 2 cut(s) | 97, 968 |
| Bsh1285I | CGRYCG | 3 cut(s) | 719, 1005, 1101 |
| BshFI | GGCC | 7 cut(s) | 62, 239, 330, 749, 810, 1010, 1100 |
| BshNI | GGYRCC | 1 cut(s) | 956 |
| BshTI | ACCGGT | 1 cut(s) | 82 |
| BshVI | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BsiEI | CGRYCG | 3 cut(s) | 719, 1005, 1101 |
| BsiHKAI | GWGCWC | 2 cut(s) | 257, 387 |
| BsiHKCI | CYCGRG | 2 cut(s) | 127, 1037 |
| BslFI | GGGAC | 2 cut(s) | 930, 1073 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 326, 953, 1096 |
| BsmAI | GTCTC | 4 cut(s) | 490, 809, 823, 968 |
| BsmBI | CGTCTC | 3 cut(s) | 490, 809, 823 |
| BsmFI | GGGAC | 2 cut(s) | 930, 1073 |
| BsnI | GGCC | 7 cut(s) | 62, 239, 330, 749, 810, 1010, 1100 |
| Bso31I | GGTCTC | 1 cut(s) | 968 |
| BsoBI | CYCGRG | 2 cut(s) | 127, 1037 |
| Bsp1286I | GDGCHC | 2 cut(s) | 257, 387 |
| Bsp143I | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| BspANI | GGCC | 7 cut(s) | 62, 239, 330, 749, 810, 1010, 1100 |
| BspCNI | CTCAG | 4 cut(s) | 114, 166, 1032, 1063 |
| BspDI | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BspFNI | CGCG | 2 cut(s) | 97, 968 |
| BspLI | GGNNCC | 3 cut(s) | 335, 748, 958 |
| BspMI | ACCTGC | 1 cut(s) | 620 |
| BspPI | GGATC | 4 cut(s) | 13, 74, 527, 732 |
| BspQI | GCTCTTC | 1 cut(s) | 1151 |
| BspT107I | GGYRCC | 1 cut(s) | 956 |
| BspTNI | GGTCTC | 1 cut(s) | 968 |
| BsrDI | GCAATG | 1 cut(s) | 370 |
| BsrFI | RCCGGY | 5 cut(s) | 58, 82, 650, 1096, 1141 |
| BsrI | ACTGG | 2 cut(s) | 748, 1085 |
| BssAI | RCCGGY | 5 cut(s) | 58, 82, 650, 1096, 1141 |
| BssECI | CCNNGG | 3 cut(s) | 592, 878, 1005 |
| BssMI | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| BssNI | GRCGYC | 1 cut(s) | 444 |
| BssT1I | CCWWGG | 1 cut(s) | 592 |
| Bst2UI | CCWGG | 2 cut(s) | 503, 1116 |
| Bst4CI | ACNGT | 3 cut(s) | 226, 356, 803 |
| Bst6I | CTCTTC | 2 cut(s) | 151, 1151 |
| BstACI | GRCGYC | 1 cut(s) | 444 |
| BstC8I | GCNNGC | 4 cut(s) | 60, 134, 866, 1098 |
| BstDEI | CTNAG | 5 cut(s) | 101, 137, 174, 1019, 1071 |
| BstDSI | CCRYGG | 1 cut(s) | 878 |
| BstF5I | GGATG | 1 cut(s) | 220 |
| BstFNI | CGCG | 2 cut(s) | 97, 968 |
| BstH2I | RGCGCY | 1 cut(s) | 906 |
| BstHHI | GCGC | 2 cut(s) | 154, 905 |
| BstKTI | GATC | 9 cut(s) | 21, 54, 69, 118, 522, 719, 740, 816, 1047 |
| BstMAI | GTCTC | 4 cut(s) | 490, 809, 823, 968 |
| BstMBI | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| BstMCI | CGRYCG | 3 cut(s) | 719, 1005, 1101 |
| BstNI | CCWGG | 2 cut(s) | 503, 1116 |
| BstNSI | RCATGY | 1 cut(s) | 868 |
| BstSCI | CCNGG | 4 cut(s) | 62, 501, 1114, 1187 |
| BstUI | CGCG | 2 cut(s) | 97, 968 |
| BstV1I | GCAGC | 9 cut(s) | 199, 202, 322, 326, 759, 848, 1078, 1147, 1188 |
| BstV2I | GAAGAC | 1 cut(s) | 79 |
| BstX2I | RGATCY | 1 cut(s) | 18 |
| BstYI | RGATCY | 1 cut(s) | 18 |
| BstZI | CGGCCG | 1 cut(s) | 1098 |
| Bsu15I | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BsuRI | GGCC | 7 cut(s) | 62, 239, 330, 749, 810, 1010, 1100 |
| BsuTUI | ATCGAT | 3 cut(s) | 36, 669, 708 |
| BtgI | CCRYGG | 1 cut(s) | 878 |
| BtgZI | GCGATG | 3 cut(s) | 1047, 1077, 1182 |
| BtsCI | GGATG | 1 cut(s) | 220 |
| BtsIMutI | CAGTG | 1 cut(s) | 741 |
| BveI | ACCTGC | 1 cut(s) | 620 |
| Cac8I | GCNNGC | 4 cut(s) | 60, 134, 866, 1098 |
| CaiI | CAGNNNCTG | 1 cut(s) | 850 |
| CfoI | GCGC | 2 cut(s) | 154, 905 |
| Cfr10I | RCCGGY | 5 cut(s) | 58, 82, 650, 1096, 1141 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 747, 799 |
| ClaI | ATCGAT | 3 cut(s) | 36, 669, 708 |
| CpoI | CGGWCCG | 1 cut(s) | 799 |
| CseI | GACGC | 4 cut(s) | 452, 472, 957, 1004 |
| Csp6I | GTAC | 2 cut(s) | 658, 895 |
| CspAI | ACCGGT | 1 cut(s) | 82 |
| CspI | CGGWCCG | 1 cut(s) | 799 |
| CviAII | CATG | 4 cut(s) | 474, 559, 865, 898 |
| CviQI | GTAC | 2 cut(s) | 658, 895 |
| DdeI | CTNAG | 5 cut(s) | 101, 137, 174, 1019, 1071 |
| DpnI | GATC | 9 cut(s) | 20, 53, 68, 117, 521, 718, 739, 815, 1046 |
| DpnII | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| EaeI | YGGCCR | 4 cut(s) | 237, 328, 808, 1098 |
| EagI | CGGCCG | 1 cut(s) | 1098 |
| Eam1104I | CTCTTC | 2 cut(s) | 151, 1151 |
| EarI | CTCTTC | 2 cut(s) | 151, 1151 |
| EciI | GGCGGA | 1 cut(s) | 898 |
| Ecl136II | GAGCTC | 2 cut(s) | 255, 385 |
| EclXI | CGGCCG | 1 cut(s) | 1098 |
| Eco130I | CCWWGG | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 2 cut(s) | 257, 387 |
| Eco31I | GGTCTC | 1 cut(s) | 968 |
| Eco32I | GATATC | 1 cut(s) | 391 |
| Eco47I | GGWCC | 1 cut(s) | 799 |
| Eco52I | CGGCCG | 1 cut(s) | 1098 |
| Eco53kI | GAGCTC | 2 cut(s) | 255, 385 |
| Eco57I | CTGAAG | 1 cut(s) | 872 |
| Eco88I | CYCGRG | 2 cut(s) | 127, 1037 |
| EcoICRI | GAGCTC | 2 cut(s) | 255, 385 |
| EcoO109I | RGGNCCY | 1 cut(s) | 747 |
| EcoRII | CCWGG | 2 cut(s) | 501, 1114 |
| EcoRV | GATATC | 1 cut(s) | 391 |
| EcoT14I | CCWWGG | 1 cut(s) | 592 |
| EcoT38I | GRGCYC | 2 cut(s) | 257, 387 |
| ErhI | CCWWGG | 1 cut(s) | 592 |
| Esp3I | CGTCTC | 3 cut(s) | 490, 809, 823 |
| FaeI | CATG | 4 cut(s) | 477, 562, 868, 901 |
| FaiI | YATR | 6 cut(s) | 475, 560, 666, 866, 899, 1080 |
| FaqI | GGGAC | 2 cut(s) | 930, 1073 |
| FatI | CATG | 4 cut(s) | 473, 558, 864, 897 |
| FauI | CCCGC | 1 cut(s) | 973 |
| FokI | GGATG | 1 cut(s) | 227 |
| FriOI | GRGCYC | 2 cut(s) | 257, 387 |
| FspI | TGCGCA | 1 cut(s) | 153 |
| GlaI | GCGC | 2 cut(s) | 153, 904 |
| GsuI | CTGGAG | 1 cut(s) | 1068 |
| HaeII | RGCGCY | 1 cut(s) | 906 |
| HaeIII | GGCC | 7 cut(s) | 62, 239, 330, 749, 810, 1010, 1100 |
| HgaI | GACGC | 4 cut(s) | 452, 472, 957, 1004 |
| HhaI | GCGC | 2 cut(s) | 154, 905 |
| Hin1I | GRCGYC | 1 cut(s) | 444 |
| Hin1II | CATG | 4 cut(s) | 477, 562, 868, 901 |
| Hin6I | GCGC | 2 cut(s) | 152, 903 |
| HinP1I | GCGC | 2 cut(s) | 152, 903 |
| HinfI | GANTC | 8 cut(s) | 38, 71, 141, 413, 463, 469, 538, 602 |
| HphI | GGTGA | 5 cut(s) | 88, 665, 1043, 1064, 1186 |
| Hpy166II | GTNNAC | 1 cut(s) | 1034 |
| Hpy188III | TCNNGA | 3 cut(s) | 103, 127, 947 |
| Hpy8I | GTNNAC | 1 cut(s) | 1034 |
| HpyAV | CCTTC | 2 cut(s) | 971, 1117 |
| HpyCH4III | ACNGT | 3 cut(s) | 226, 356, 803 |
| HpyCH4IV | ACGT | 1 cut(s) | 570 |
| HpyCH4V | TGCA | 4 cut(s) | 342, 586, 615, 868 |
| HpyF3I | CTNAG | 5 cut(s) | 101, 137, 174, 1019, 1071 |
| HpySE526I | ACGT | 1 cut(s) | 570 |
| Hsp92I | GRCGYC | 1 cut(s) | 444 |
| Hsp92II | CATG | 4 cut(s) | 477, 562, 868, 901 |
| HspAI | GCGC | 2 cut(s) | 152, 903 |
| KroI | GCCGGC | 2 cut(s) | 58, 1096 |
| KroNI | GCCGGC | 2 cut(s) | 60, 1098 |
| Kzo9I | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| LguI | GCTCTTC | 1 cut(s) | 1151 |
| LmnI | GCTCC | 3 cut(s) | 218, 377, 1003 |
| Lsp1109I | GCAGC | 9 cut(s) | 199, 202, 322, 326, 759, 848, 1078, 1147, 1188 |
| LweI | GCATC | 1 cut(s) | 1205 |
| MaeII | ACGT | 1 cut(s) | 570 |
| MaeIII | GTNAC | 1 cut(s) | 1183 |
| MalI | GATC | 9 cut(s) | 20, 53, 68, 117, 521, 718, 739, 815, 1046 |
| MboI | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| MfeI | CAATTG | 1 cut(s) | 343 |
| MflI | RGATCY | 1 cut(s) | 18 |
| MhlI | GDGCHC | 2 cut(s) | 257, 387 |
| MluCI | AATT | 5 cut(s) | 46, 283, 343, 722, 1105 |
| MlyI | GAGTC | 2 cut(s) | 65, 472 |
| MmeI | TCCRAC | 5 cut(s) | 46, 399, 769, 951, 1025 |
| MroNI | GCCGGC | 2 cut(s) | 58, 1096 |
| MroXI | GAANNNNTTC | 1 cut(s) | 145 |
| MspA1I | CMGCKG | 2 cut(s) | 233, 339 |
| MspR9I | CCNGG | 4 cut(s) | 64, 503, 1116, 1189 |
| MunI | CAATTG | 1 cut(s) | 343 |
| MvaI | CCWGG | 2 cut(s) | 503, 1116 |
| MvnI | CGCG | 2 cut(s) | 97, 968 |
| NaeI | GCCGGC | 2 cut(s) | 60, 1098 |
| NciI | CCSGG | 2 cut(s) | 64, 1189 |
| NdeII | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| NgoMIV | GCCGGC | 2 cut(s) | 58, 1096 |
| NlaIII | CATG | 4 cut(s) | 477, 562, 868, 901 |
| NlaIV | GGNNCC | 3 cut(s) | 335, 748, 958 |
| NmeAIII | GCCGAG | 4 cut(s) | 265, 276, 786, 916 |
| NsbI | TGCGCA | 1 cut(s) | 153 |
| NspI | RCATGY | 1 cut(s) | 868 |
| PaeI | GCATGC | 1 cut(s) | 868 |
| PaeR7I | CTCGAG | 1 cut(s) | 1037 |
| PaqCI | CACCTGC | 1 cut(s) | 620 |
| PciSI | GCTCTTC | 1 cut(s) | 1151 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 384, 666, 813, 822, 1002 |
| PdiI | GCCGGC | 2 cut(s) | 60, 1098 |
| PdmI | GAANNNNTTC | 1 cut(s) | 145 |
| PfeI | GAWTC | 6 cut(s) | 38, 141, 413, 469, 538, 602 |
| PinAI | ACCGGT | 1 cut(s) | 82 |
| Ple19I | CGATCG | 1 cut(s) | 719 |
| PleI | GAGTC | 2 cut(s) | 65, 471 |
| PpsI | GAGTC | 2 cut(s) | 65, 471 |
| Psp124BI | GAGCTC | 2 cut(s) | 257, 387 |
| Psp6I | CCWGG | 2 cut(s) | 501, 1114 |
| PspGI | CCWGG | 2 cut(s) | 501, 1114 |
| PspN4I | GGNNCC | 3 cut(s) | 335, 748, 958 |
| PspPI | GGNCC | 3 cut(s) | 61, 747, 799 |
| PspXI | VCTCGAGB | 1 cut(s) | 1037 |
| PstNI | CAGNNNCTG | 1 cut(s) | 850 |
| PsuI | RGATCY | 1 cut(s) | 18 |
| PvuI | CGATCG | 1 cut(s) | 719 |
| RsaI | GTAC | 2 cut(s) | 659, 896 |
| RsaNI | GTAC | 2 cut(s) | 658, 895 |
| Rsr2I | CGGWCCG | 1 cut(s) | 799 |
| RsrII | CGGWCCG | 1 cut(s) | 799 |
| SacI | GAGCTC | 2 cut(s) | 257, 387 |
| SapI | GCTCTTC | 1 cut(s) | 1151 |
| Sau3AI | GATC | 9 cut(s) | 18, 51, 66, 115, 519, 716, 737, 813, 1044 |
| Sau96I | GGNCC | 3 cut(s) | 61, 747, 799 |
| SchI | GAGTC | 2 cut(s) | 65, 472 |
| ScrFI | CCNGG | 4 cut(s) | 64, 503, 1116, 1189 |
| SduI | GDGCHC | 2 cut(s) | 257, 387 |
| SfaNI | GCATC | 1 cut(s) | 1205 |
| Sfr274I | CTCGAG | 1 cut(s) | 1037 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1141 |
| SinI | GGWCC | 1 cut(s) | 799 |
| SlaI | CTCGAG | 1 cut(s) | 1037 |
| SmlI | CTYRAG | 2 cut(s) | 1037, 1205 |
| SmoI | CTYRAG | 2 cut(s) | 1037, 1205 |
| SphI | GCATGC | 1 cut(s) | 868 |
| Sse9I | AATT | 5 cut(s) | 46, 283, 343, 722, 1105 |
| SstI | GAGCTC | 2 cut(s) | 257, 387 |
| StyD4I | CCNGG | 4 cut(s) | 62, 501, 1114, 1187 |
| StyI | CCWWGG | 1 cut(s) | 592 |
| TaaI | ACNGT | 3 cut(s) | 226, 356, 803 |
| TaiI | ACGT | 1 cut(s) | 573 |
| TaqII | GACCGA | 1 cut(s) | 1019 |
| TasI | AATT | 5 cut(s) | 46, 283, 343, 722, 1105 |
| TatI | WGTACW | 1 cut(s) | 894 |
| TauI | GCSGC | 5 cut(s) | 100, 181, 233, 316, 319 |
| TfiI | GAWTC | 6 cut(s) | 38, 141, 413, 469, 538, 602 |
| TscAI | CASTG | 1 cut(s) | 748 |
| TseI | GCWGC | 9 cut(s) | 187, 190, 310, 339, 772, 836, 1066, 1135, 1201 |
| TspDTI | ATGAA | 2 cut(s) | 29, 277 |
| TspGWI | ACGGA | 3 cut(s) | 594, 867, 1099 |
| TspRI | CASTG | 1 cut(s) | 748 |
| VpaK11BI | GGWCC | 1 cut(s) | 799 |
| XapI | RAATTY | 4 cut(s) | 46, 283, 722, 1105 |
| XceI | RCATGY | 1 cut(s) | 868 |
| XhoI | CTCGAG | 1 cut(s) | 1037 |
| XmnI | GAANNNNTTC | 1 cut(s) | 145 |