Rh4BG018500

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013897
Physical Location & Seq
Forward (+)
2919550 .. 2922027
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG018500.1

Sequence Viewer

Length: 969 bp
ATGACAGCTCCGACGACGAGCTCGACGTCTTCGGCGGCGAGTCCATCACCACCGGTGGTTCCTTTGGCGGCGACGCCTCTGATGTCCTCAAGGTATAAACGACGTCGCTTCAACCTCACTTTTTCTATATTCTGTCGCGGTTTCTGGATTACGAAACATAAAAGCATAAATCTTCTTTTTCAATCTGATTCGAATTGTTTGTTTGCTTTTACGATTTTTCAGAGTCTGATTCCATGCGCGAGTGTCCACGAGAGAAACCTCTTAGCCGACTCAGCCAAAATCGTCGAGACGAACAAGAATATCAAACAGAAAGACGAGCTCAGAAAGATCGTCACCGACGGCCTCTCGTCTCTCGGCTACGACTCCTCCATCTGTAAATCCAAGTGGGACAAATCACCGTCTTTTCCTGCCGGTGAATACGAGTACATCGATGTGATGGTGGAGGGGGACAGGTTGTTGATTGACATCGATTTCCGATCGGAATTCGAAGTGGCGCGGCCCACTGGGGCCTACAAGGCAGTCCTTCAATCGCTGCCGTTCATTTTCGTCGGCAAATCGGACCGTCTCGGCCAGATCGTCTCCATCGTAACGGAGGCGGCGAAGCAGAGCCTCAAGAAGAAAGGAATGCCGTTTCCGCCGTGGCGGAAAGCCGAGTACGTCAGAGCCAAGTGGCTCTCTCCTTGCACAACCAGAACCACCGCCTCGCAGCTTCGGAACGACGTCGTTGCTCCGGCGCCGGAGAATGGGACCGTCGTCGTTTCCGACGACCTGAGCGAGTGCGGAGAACTCGAGTTGATCTTCGGCGAGGACGCCGTGAATTTAACCGATCCGTCGCCGGAAGTTGAGGCGAAAGTGACCGGAAATTCAGTGGCGGTGGCGTGGCAGCCGCCGGCGGTCAAGCCGAAGAGCGTTGAGAGAGGAGCGAGGATCGTGACCGGTTTGGCTTCGTTGCTAGCAGCAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

322

Amino Acids

35.27

Weight (kDa)

8.93

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 73 - 229 1.2e-64 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22970 AT3G22970
fragaria_vesca FvH4_4g01830
malus_domestica MD13G1202800.v1.1
prunus_persica Prupe.1G024900_v2.0.a1
pyrus_communis pycom13g17580 pycom16g17110
rosa_chinensis RchiOBHm_Chr4g0388891
rosa_laevigata RLG00000010016
rosa_multiflora Rmu_sc0000697.1_g000004
rosa_roxburghii Rroxscaffold_5G00335200
rosa_rugosa Rorug03G0320800
rosa_samantha Rh4AG025300 Rh4BG018500 Rh4CG028300 Rh4DG019000
rosa_wichuraiana Rw4G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 29, 106, 723
AccB1I GGYRCC 1 cut(s) 733
AccII CGCG 3 cut(s) 138, 239, 496
AclWI GGATC 2 cut(s) 821, 935
AcoI YGGCCR 1 cut(s) 568
AcsI RAATTY 3 cut(s) 482, 817, 862
AcyI GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
AfaI GTAC 2 cut(s) 425, 656
AfiI CCNNNNNNNGG 1 cut(s) 743
AgeI ACCGGT 2 cut(s) 52, 935
AgsI TTSAA 3 cut(s) 112, 182, 527
AluBI AGCT 4 cut(s) 8, 21, 319, 709
AluI AGCT 4 cut(s) 8, 21, 319, 709
Alw21I GWGCWC 2 cut(s) 23, 321
Alw26I GTCTC 4 cut(s) 281, 354, 569, 583
AlwI GGATC 2 cut(s) 821, 935
AlwNI CAGNNNCTG 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 4 cut(s) 340, 497, 507, 568
ApeKI GCWGC 4 cut(s) 532, 706, 883, 956
ApoI RAATTY 3 cut(s) 482, 817, 862
AsiGI ACCGGT 2 cut(s) 52, 935
AspLEI GCGC 3 cut(s) 239, 496, 736
AspS9I GGNCC 4 cut(s) 498, 507, 559, 747
AsuHPI GGTGA 4 cut(s) 39, 325, 387, 425
AsuII TTCGAA 2 cut(s) 191, 486
AsuNHI GCTAGC 1 cut(s) 952
AvaI CYCGRG 1 cut(s) 788
AvaII GGWCC 2 cut(s) 559, 747
BanI GGYRCC 1 cut(s) 733
BanII GRGCYC 2 cut(s) 23, 321
BauI CACGAG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 23, 321
BbvI GCAGC 3 cut(s) 519, 718, 895
BccI CCATC 4 cut(s) 52, 377, 430, 590
BceAI ACGGC 5 cut(s) 355, 520, 613, 622, 797
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BcoDI GTCTC 4 cut(s) 281, 354, 569, 583
BfaI CTAG 1 cut(s) 953
BfoI RGCGCY 1 cut(s) 737
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 9 cut(s) 36, 69, 497, 533, 597, 707, 884, 887, 957
BlsI GCNGC 9 cut(s) 37, 70, 498, 534, 598, 708, 885, 888, 958
Bme18I GGWCC 2 cut(s) 559, 747
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 4 cut(s) 498, 507, 559, 747
BmiI GGNNCC 4 cut(s) 60, 508, 735, 748
BmrI ACTGGG 1 cut(s) 513
BmtI GCTAGC 1 cut(s) 956
BmuI ACTGGG 1 cut(s) 513
BoxI GACNNNNGTC 1 cut(s) 752
BpiI GAAGAC 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 770
Bpu14I TTCGAA 2 cut(s) 191, 486
BpuEI CTTGAG 2 cut(s) 73, 596
Bsa29I ATCGAT 2 cut(s) 429, 468
BsaBI GATNNNNATC 1 cut(s) 464
BsaHI GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
BsaJI CCNNGG 1 cut(s) 638
BsaWI WCCGGW 3 cut(s) 52, 857, 935
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse118I RCCGGY 4 cut(s) 52, 410, 889, 935
Bse1I ACTGG 1 cut(s) 508
Bse8I GATNNNNATC 1 cut(s) 464
BseCI ATCGAT 2 cut(s) 429, 468
BseDI CCNNGG 1 cut(s) 638
BseJI GATNNNNATC 1 cut(s) 464
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMII CTCAG 3 cut(s) 285, 334, 761
BseNI ACTGG 1 cut(s) 508
BseRI GAGGAG 2 cut(s) 355, 933
BseXI GCAGC 3 cut(s) 519, 718, 895
Bsh1236I CGCG 3 cut(s) 138, 239, 496
Bsh1285I CGRYCG 1 cut(s) 479
BshFI GGCC 4 cut(s) 342, 499, 509, 570
BshNI GGYRCC 1 cut(s) 733
BshTI ACCGGT 2 cut(s) 52, 935
BshVI ATCGAT 2 cut(s) 429, 468
BsiEI CGRYCG 1 cut(s) 479
BsiHKAI GWGCWC 2 cut(s) 23, 321
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 8 cut(s) 53, 411, 731, 737, 836, 858, 890, 936
BslFI GGGAC 3 cut(s) 401, 461, 760
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 4 cut(s) 281, 354, 569, 583
BsmBI CGTCTC 4 cut(s) 281, 354, 569, 583
BsmFI GGGAC 3 cut(s) 401, 461, 760
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 4 cut(s) 342, 499, 509, 570
BsoBI CYCGRG 1 cut(s) 788
Bsp119I TTCGAA 2 cut(s) 191, 486
Bsp1286I GDGCHC 2 cut(s) 23, 321
Bsp143I GATC 6 cut(s) 327, 476, 573, 795, 826, 927
BspANI GGCC 4 cut(s) 342, 499, 509, 570
BspCNI CTCAG 3 cut(s) 284, 333, 762
BspDI ATCGAT 2 cut(s) 429, 468
BspFNI CGCG 3 cut(s) 138, 239, 496
BspLI GGNNCC 4 cut(s) 60, 508, 735, 748
BspOI GCTAGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 821, 935
BspQI GCTCTTC 1 cut(s) 899
BspT104I TTCGAA 2 cut(s) 191, 486
BspT107I GGYRCC 1 cut(s) 733
BsrFI RCCGGY 4 cut(s) 52, 410, 889, 935
BsrI ACTGG 1 cut(s) 508
BssAI RCCGGY 4 cut(s) 52, 410, 889, 935
BssECI CCNNGG 1 cut(s) 638
BssMI GATC 6 cut(s) 327, 476, 573, 795, 826, 927
BssNI GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 4 cut(s) 399, 563, 751, 966
Bst6I CTCTTC 1 cut(s) 899
BstACI GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
BstBI TTCGAA 2 cut(s) 191, 486
BstC8I GCNNGC 2 cut(s) 891, 954
BstDEI CTNAG 4 cut(s) 262, 271, 320, 770
BstDSI CCRYGG 1 cut(s) 638
BstFNI CGCG 3 cut(s) 138, 239, 496
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 3 cut(s) 239, 496, 736
BstKTI GATC 6 cut(s) 330, 479, 576, 798, 829, 930
BstMAI GTCTC 4 cut(s) 281, 354, 569, 583
BstMBI GATC 6 cut(s) 327, 476, 573, 795, 826, 927
BstMCI CGRYCG 1 cut(s) 479
BstMWI GCNNNNNNNGC 3 cut(s) 272, 515, 634
BstPAI GACNNNNGTC 1 cut(s) 752
BstUI CGCG 3 cut(s) 138, 239, 496
BstV1I GCAGC 3 cut(s) 519, 718, 895
BstV2I GAAGAC 1 cut(s) 21
Bsu15I ATCGAT 2 cut(s) 429, 468
BsuRI GGCC 4 cut(s) 342, 499, 509, 570
BsuTUI ATCGAT 2 cut(s) 429, 468
BtgI CCRYGG 1 cut(s) 638
BtsIMutI CAGTG 2 cut(s) 501, 873
Cac8I GCNNGC 2 cut(s) 891, 954
CaiI CAGNNNCTG 1 cut(s) 226
CfoI GCGC 3 cut(s) 239, 496, 736
Cfr10I RCCGGY 4 cut(s) 52, 410, 889, 935
Cfr13I GGNCC 4 cut(s) 498, 507, 559, 747
ClaI ATCGAT 2 cut(s) 429, 468
CpoI CGGWCCG 1 cut(s) 559
CseI GACGC 2 cut(s) 82, 818
Csp6I GTAC 2 cut(s) 424, 655
CspAI ACCGGT 2 cut(s) 52, 935
CspI CGGWCCG 1 cut(s) 559
CviAII CATG 1 cut(s) 234
CviQI GTAC 2 cut(s) 424, 655
DdeI CTNAG 4 cut(s) 262, 271, 320, 770
DinI GGCGCC 1 cut(s) 735
DpnI GATC 6 cut(s) 329, 478, 575, 797, 828, 929
DpnII GATC 6 cut(s) 327, 476, 573, 795, 826, 927
EaeI YGGCCR 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 899
EarI CTCTTC 1 cut(s) 899
EciI GGCGGA 2 cut(s) 624, 658
Ecl136II GAGCTC 2 cut(s) 21, 319
Eco24I GRGCYC 2 cut(s) 23, 321
Eco47I GGWCC 2 cut(s) 559, 747
Eco53kI GAGCTC 2 cut(s) 21, 319
Eco88I CYCGRG 1 cut(s) 788
EcoICRI GAGCTC 2 cut(s) 21, 319
EcoO109I RGGNCCY 1 cut(s) 507
EcoRI GAATTC 1 cut(s) 482
EcoT38I GRGCYC 2 cut(s) 23, 321
EgeI GGCGCC 1 cut(s) 735
EheI GGCGCC 1 cut(s) 735
Esp3I CGTCTC 4 cut(s) 281, 354, 569, 583
FaeI CATG 1 cut(s) 237
FaiI YATR 5 cut(s) 96, 128, 159, 167, 235
FaqI GGGAC 3 cut(s) 401, 461, 760
FatI CATG 1 cut(s) 233
Fnu4HI GCNGC 9 cut(s) 36, 69, 497, 533, 597, 707, 884, 887, 957
FriOI GRGCYC 2 cut(s) 23, 321
Fsp4HI GCNGC 9 cut(s) 36, 69, 497, 533, 597, 707, 884, 887, 957
FspBI CTAG 1 cut(s) 953
GlaI GCGC 3 cut(s) 238, 495, 735
GluI GCNGC 9 cut(s) 36, 69, 497, 533, 597, 707, 884, 887, 957
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 4 cut(s) 342, 499, 509, 570
HapII CCGG 8 cut(s) 53, 411, 731, 737, 836, 858, 890, 936
HgaI GACGC 2 cut(s) 82, 818
HhaI GCGC 3 cut(s) 239, 496, 736
Hin1I GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
Hin1II CATG 1 cut(s) 237
Hin6I GCGC 3 cut(s) 237, 494, 734
HinP1I GCGC 3 cut(s) 237, 494, 734
HinfI GANTC 6 cut(s) 40, 188, 223, 229, 269, 362
HpaII CCGG 8 cut(s) 53, 411, 731, 737, 836, 858, 890, 936
HphI GGTGA 4 cut(s) 39, 325, 387, 425
Hpy166II GTNNAC 1 cut(s) 247
Hpy188III TCNNGA 4 cut(s) 145, 286, 613, 931
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 4 cut(s) 399, 563, 751, 966
HpyCH4IV ACGT 4 cut(s) 26, 103, 657, 720
HpyCH4V TGCA 1 cut(s) 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 515, 634
HpyF3I CTNAG 4 cut(s) 262, 271, 320, 770
HpySE526I ACGT 4 cut(s) 26, 103, 657, 720
Hsp92I GRCGYC 6 cut(s) 26, 74, 103, 720, 734, 810
Hsp92II CATG 1 cut(s) 237
HspAI GCGC 3 cut(s) 237, 494, 734
KasI GGCGCC 1 cut(s) 733
KroI GCCGGC 1 cut(s) 889
KroNI GCCGGC 1 cut(s) 891
Kzo9I GATC 6 cut(s) 327, 476, 573, 795, 826, 927
LguI GCTCTTC 1 cut(s) 899
LmnI GCTCC 3 cut(s) 13, 733, 920
Lsp1109I GCAGC 3 cut(s) 519, 718, 895
MaeI CTAG 1 cut(s) 953
MaeII ACGT 4 cut(s) 26, 103, 657, 720
MaeIII GTNAC 4 cut(s) 331, 586, 853, 931
MalI GATC 6 cut(s) 329, 478, 575, 797, 828, 929
MboI GATC 6 cut(s) 327, 476, 573, 795, 826, 927
MboII GAAGA 5 cut(s) 21, 164, 628, 790, 916
MhlI GDGCHC 2 cut(s) 23, 321
MluCI AATT 4 cut(s) 193, 482, 817, 862
Mly113I GGCGCC 1 cut(s) 734
MlyI GAGTC 4 cut(s) 49, 232, 263, 356
MmeI TCCRAC 2 cut(s) 35, 786
MreI CGCCGGCG 1 cut(s) 889
MroNI GCCGGC 1 cut(s) 889
MseI TTAA 1 cut(s) 821
MslI CAYNNNNRTG 1 cut(s) 431
MspI CCGG 8 cut(s) 53, 411, 731, 737, 836, 858, 890, 936
Mva1269I GAATGC 1 cut(s) 630
MvnI CGCG 3 cut(s) 138, 239, 496
MwoI GCNNNNNNNGC 3 cut(s) 272, 515, 634
NaeI GCCGGC 1 cut(s) 891
NarI GGCGCC 1 cut(s) 734
NdeII GATC 6 cut(s) 327, 476, 573, 795, 826, 927
NgoMIV GCCGGC 1 cut(s) 889
NheI GCTAGC 1 cut(s) 952
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 4 cut(s) 60, 508, 735, 748
NmeAIII GCCGAG 3 cut(s) 333, 546, 676
NmuCI GTSAC 3 cut(s) 331, 853, 931
NspV TTCGAA 2 cut(s) 191, 486
PaeR7I CTCGAG 1 cut(s) 788
PciSI GCTCTTC 1 cut(s) 899
PcsI WCGNNNNNNNCGW 9 cut(s) 20, 23, 426, 573, 582, 596, 759, 762, 771
PctI GAATGC 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 891
PfeI GAWTC 2 cut(s) 188, 229
PinAI ACCGGT 2 cut(s) 52, 935
PkrI GCNGC 9 cut(s) 37, 70, 498, 534, 598, 708, 885, 888, 958
Ple19I CGATCG 1 cut(s) 479
PleI GAGTC 4 cut(s) 48, 231, 263, 356
PluTI GGCGCC 1 cut(s) 737
PpsI GAGTC 4 cut(s) 48, 231, 263, 356
PshAI GACNNNNGTC 1 cut(s) 752
Psp124BI GAGCTC 2 cut(s) 23, 321
PspN4I GGNNCC 4 cut(s) 60, 508, 735, 748
PspPI GGNCC 4 cut(s) 498, 507, 559, 747
PspXI VCTCGAGB 1 cut(s) 788
PstNI CAGNNNCTG 1 cut(s) 226
PvuI CGATCG 1 cut(s) 479
RsaI GTAC 2 cut(s) 425, 656
RsaNI GTAC 2 cut(s) 424, 655
RseI CAYNNNNRTG 1 cut(s) 431
Rsr2I CGGWCCG 1 cut(s) 559
RsrII CGGWCCG 1 cut(s) 559
SacI GAGCTC 2 cut(s) 23, 321
SapI GCTCTTC 1 cut(s) 899
SaqAI TTAA 1 cut(s) 821
SatI GCNGC 9 cut(s) 36, 69, 497, 533, 597, 707, 884, 887, 957
Sau3AI GATC 6 cut(s) 327, 476, 573, 795, 826, 927
Sau96I GGNCC 4 cut(s) 498, 507, 559, 747
SchI GAGTC 4 cut(s) 49, 232, 263, 356
SduI GDGCHC 2 cut(s) 23, 321
SfoI GGCGCC 1 cut(s) 735
Sfr274I CTCGAG 1 cut(s) 788
SfuI TTCGAA 2 cut(s) 191, 486
SgrAI CRCCGGYG 2 cut(s) 52, 889
SinI GGWCC 2 cut(s) 559, 747
SlaI CTCGAG 1 cut(s) 788
SmiMI CAYNNNNRTG 1 cut(s) 431
SmlI CTYRAG 3 cut(s) 88, 611, 788
SmoI CTYRAG 3 cut(s) 88, 611, 788
Sse9I AATT 4 cut(s) 193, 482, 817, 862
SspDI GGCGCC 1 cut(s) 733
SspMI CTAG 1 cut(s) 953
SstI GAGCTC 2 cut(s) 23, 321
TaaI ACNGT 4 cut(s) 399, 563, 751, 966
TaiI ACGT 4 cut(s) 29, 106, 660, 723
TaqI TCGA 7 cut(s) 23, 191, 285, 429, 468, 486, 789
TasI AATT 4 cut(s) 193, 482, 817, 862
TatI WGTACW 1 cut(s) 423
TauI GCSGC 5 cut(s) 38, 71, 499, 599, 889
TfiI GAWTC 2 cut(s) 188, 229
Tru1I TTAA 1 cut(s) 821
Tru9I TTAA 1 cut(s) 821
TscAI CASTG 2 cut(s) 508, 873
TseFI GTSAC 3 cut(s) 331, 853, 931
TseI GCWGC 4 cut(s) 532, 706, 883, 956
Tsp45I GTSAC 3 cut(s) 331, 853, 931
TspDTI ATGAA 1 cut(s) 529
TspGWI ACGGA 2 cut(s) 605, 819
TspRI CASTG 2 cut(s) 508, 873
VpaK11BI GGWCC 2 cut(s) 559, 747
XapI RAATTY 3 cut(s) 482, 817, 862
XhoI CTCGAG 1 cut(s) 788
XspI CTAG 1 cut(s) 953
ZraI GACGTC 3 cut(s) 27, 104, 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.