FvH4_4g01830

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013897
Physical Location & Seq
Forward (+)
1605020 .. 1608114
3095 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g01830.t1

Sequence Viewer

Length: 1182 bp
ATGCCTTTTCCGATGAAGATCCAACCGATCGATATCGATTCCGAGACGCTCCGGATCGACACGGCGGCCAAGCCGGTGATGAAATCCCGGCTCCGACGGCTGTTTGACCGGCAGTTCCCCAGCGTGCTTAAAATCTCCTCGACCGAAAAGCCTCCCGCCGGCAGCGATTTCAACAAGGACGTCGGAGGAGGAGCGATCGCCGCCGCCGCAGAGTTCGAGCCGACCTCGGTGTGCCTGGCGAAGATGGTTCAGAATTTCATTGAGGAAACCAACGAGAAGCAGCATCCGACGAAATGTGGCCGGAACCGCTGCAATTGCTTTCACGGAAACAACAATGACAGCTCCGACGACGAGCTCGACTTCTTCGGCGGCGAGTCCACCACCGGCGGTTCCTTCGGCGGCGACGCTTCTGATATCCTCAAGAGCCTGATTCCATGCGTGAGCGTCGCCGAGAGAAACCTCTTAGCCGACACGGCGAAGATCGTCGAGAGTAGCAAGAATCTGAAGCAGAAAGACGAGCTCAGAAATATCGTCACCGACGGCCTCTGCTCTCTCGGCTACGACTCCTCCGTCTGCAAATCCAAGTGGGACAAGTCACCGTCCTTCCCTGCCGGTGAATACGAGTACATCGATGTGATTGTGGAGGGGGAGAGGTTGTTGATCGACATCGATTTCCGATCGGAATTCGAGGTGGCGCGTCCCACTGGGGCCTACAAGGCCGTCCTCCAATCCCTGCCGTTCATTTTCGTCGGCAAATCGGACCGTCTCGGCCAGATCGTCGCCATCGTATCGGAGGCGGCCAGGCAGAGCCTCAAGAAGAAAGGCATGCCGTTTCCGCCGTGGCGTAAAGCCGAGTACGTCAGGGCCAAGTGGCTCTCTCCTTGCACCACCAGAACCACCACGACGCCGAAGCTAAAAAACGACGTCGTCCCGGCGCCGGAGAGTGCTGCCGTCAGTTCAGATGATCGGACTGACCACCTGAGCGAGTGCGGAGAGTTTGAGTTGATCTTCGGCGAGGACGCCGTGAATTCGACCGATCCGTCGCCGGAAGTTGAGGCGAAAGTGACCGGAAATTCAACGGCGGTTGGTGCGTGGCAGCCGCCGGCGGTCAAGCCGAAGAGCGTTGAGAGAGGAGCGAGGATCGTGACCGGTTTGGCTTCGCTGCTAGCAGCAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

394

Amino Acids

42.73

Weight (kDa)

5.56

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 81 - 296 2.2e-74 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013897)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22970 AT3G22970
fragaria_vesca FvH4_4g01830
malus_domestica MD13G1202800.v1.1
prunus_persica Prupe.1G024900_v2.0.a1
pyrus_communis pycom13g17580 pycom16g17110
rosa_chinensis RchiOBHm_Chr4g0388891
rosa_laevigata RLG00000010016
rosa_multiflora Rmu_sc0000697.1_g000004
rosa_roxburghii Rroxscaffold_5G00335200
rosa_rugosa Rorug03G0320800
rosa_samantha Rh4AG025300 Rh4BG018500 Rh4CG028300 Rh4DG019000
rosa_wichuraiana Rw4G001820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 569, 1039
AatII GACGTC 2 cut(s) 183, 927
AccB1I GGYRCC 1 cut(s) 934
AccII CGCG 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 51
AclWI GGATC 4 cut(s) 13, 62, 1031, 1148
AcoI YGGCCR 4 cut(s) 66, 298, 769, 798
AcsI RAATTY 4 cut(s) 253, 683, 1027, 1072
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
AfaI GTAC 2 cut(s) 626, 857
AfiI CCNNNNNNNGG 2 cut(s) 158, 937
AgeI ACCGGT 1 cut(s) 1148
AgsI TTSAA 2 cut(s) 172, 1077
AjnI CCWGG 2 cut(s) 234, 800
AluBI AGCT 4 cut(s) 342, 355, 520, 913
AluI AGCT 4 cut(s) 342, 355, 520, 913
Alw21I GWGCWC 2 cut(s) 357, 522
Alw26I GTCTC 2 cut(s) 38, 770
AlwI GGATC 4 cut(s) 13, 62, 1031, 1148
Aor13HI TCCGGA 1 cut(s) 51
AoxI GGCC 8 cut(s) 66, 298, 541, 708, 717, 769, 798, 864
ApeKI GCWGC 7 cut(s) 162, 280, 309, 947, 1096, 1162, 1169
ApoI RAATTY 4 cut(s) 253, 683, 1027, 1072
AsiGI ACCGGT 1 cut(s) 1148
AsiSI GCGATCGC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 697, 937
AspS9I GGNCC 3 cut(s) 708, 760, 864
AsuC2I CCSGG 2 cut(s) 88, 932
AsuHPI GGTGA 4 cut(s) 88, 526, 588, 626
AsuNHI GCTAGC 1 cut(s) 1165
AvaII GGWCC 1 cut(s) 760
BanI GGYRCC 1 cut(s) 934
BanII GRGCYC 2 cut(s) 357, 522
Bbv12I GWGCWC 2 cut(s) 357, 522
BbvI GCAGC 6 cut(s) 174, 292, 296, 934, 1108, 1149
BccI CCATC 2 cut(s) 238, 791
BciT130I CCWGG 2 cut(s) 236, 802
BcnI CCSGG 2 cut(s) 88, 932
BcoDI GTCTC 2 cut(s) 38, 770
BfaI CTAG 1 cut(s) 1166
BfoI RGCGCY 1 cut(s) 938
BglI GCCNNNNNGGC 2 cut(s) 473, 716
Bme1390I CCNGG 4 cut(s) 88, 236, 802, 932
Bme18I GGWCC 1 cut(s) 760
BmgT120I GGNCC 3 cut(s) 708, 760, 864
BmiI GGNNCC 5 cut(s) 92, 305, 391, 709, 936
BmrFI CCNGG 4 cut(s) 88, 236, 802, 932
BmrI ACTGGG 1 cut(s) 714
BmsI GCATC 1 cut(s) 292
BmtI GCTAGC 1 cut(s) 1169
BmuI ACTGGG 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 980
BpuEI CTTGAG 2 cut(s) 404, 797
BpuMI CCSGG 2 cut(s) 88, 932
Bsa29I ATCGAT 4 cut(s) 30, 36, 630, 669
BsaBI GATNNNNATC 3 cut(s) 17, 32, 665
BsaHI GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
BsaJI CCNNGG 2 cut(s) 225, 839
BsaWI WCCGGW 3 cut(s) 51, 1067, 1148
BsaXI ACNNNNNCTCC 4 cut(s) 551, 581, 641, 671
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 937
Bse118I RCCGGY 7 cut(s) 73, 108, 158, 383, 611, 1102, 1148
Bse1I ACTGG 1 cut(s) 709
Bse8I GATNNNNATC 3 cut(s) 17, 32, 665
BseAI TCCGGA 1 cut(s) 51
BseBI CCWGG 2 cut(s) 236, 802
BseCI ATCGAT 4 cut(s) 30, 36, 630, 669
BseDI CCNNGG 2 cut(s) 225, 839
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 3 cut(s) 17, 32, 665
BseLI CCNNNNNNNGG 2 cut(s) 158, 937
BseMII CTCAG 2 cut(s) 535, 971
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 5 cut(s) 127, 201, 204, 556, 1146
BseXI GCAGC 6 cut(s) 174, 292, 296, 934, 1108, 1149
BseYI CCCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 697
Bsh1285I CGRYCG 5 cut(s) 30, 144, 198, 680, 1035
BshFI GGCC 8 cut(s) 68, 300, 543, 710, 719, 771, 800, 866
BshNI GGYRCC 1 cut(s) 934
BshTI ACCGGT 1 cut(s) 1148
BshVI ATCGAT 4 cut(s) 30, 36, 630, 669
BsiEI CGRYCG 5 cut(s) 30, 144, 198, 680, 1035
BsiHKAI GWGCWC 2 cut(s) 357, 522
BslFI GGGAC 3 cut(s) 602, 684, 914
BslI CCNNNNNNNGG 2 cut(s) 158, 937
BsmAI GTCTC 2 cut(s) 38, 770
BsmBI CGTCTC 2 cut(s) 38, 770
BsmFI GGGAC 3 cut(s) 602, 684, 914
BsnI GGCC 8 cut(s) 68, 300, 543, 710, 719, 771, 800, 866
Bsp1286I GDGCHC 2 cut(s) 357, 522
Bsp13I TCCGGA 1 cut(s) 51
BspANI GGCC 8 cut(s) 68, 300, 543, 710, 719, 771, 800, 866
BspCNI CTCAG 2 cut(s) 534, 972
BspDI ATCGAT 4 cut(s) 30, 36, 630, 669
BspEI TCCGGA 1 cut(s) 51
BspFNI CGCG 1 cut(s) 697
BspLI GGNNCC 5 cut(s) 92, 305, 391, 709, 936
BspOI GCTAGC 1 cut(s) 1169
BspPI GGATC 4 cut(s) 13, 62, 1031, 1148
BspQI GCTCTTC 1 cut(s) 1112
BspT107I GGYRCC 1 cut(s) 934
BsrFI RCCGGY 7 cut(s) 73, 108, 158, 383, 611, 1102, 1148
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 7 cut(s) 73, 108, 158, 383, 611, 1102, 1148
BssECI CCNNGG 2 cut(s) 225, 839
BssNI GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
Bst2UI CCWGG 2 cut(s) 236, 802
Bst4CI ACNGT 3 cut(s) 600, 764, 1179
Bst6I CTCTTC 1 cut(s) 1112
BstACI GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
BstC8I GCNNGC 5 cut(s) 125, 160, 827, 1104, 1167
BstDEI CTNAG 3 cut(s) 463, 521, 980
BstDSI CCRYGG 1 cut(s) 839
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 697
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 2 cut(s) 697, 937
BstMAI GTCTC 2 cut(s) 38, 770
BstMCI CGRYCG 5 cut(s) 30, 144, 198, 680, 1035
BstNI CCWGG 2 cut(s) 236, 802
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 4 cut(s) 86, 234, 800, 930
BstUI CGCG 1 cut(s) 697
BstV1I GCAGC 6 cut(s) 174, 292, 296, 934, 1108, 1149
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
Bsu15I ATCGAT 4 cut(s) 30, 36, 630, 669
BsuRI GGCC 8 cut(s) 68, 300, 543, 710, 719, 771, 800, 866
BsuTUI ATCGAT 4 cut(s) 30, 36, 630, 669
BtgI CCRYGG 1 cut(s) 839
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 5 cut(s) 125, 160, 827, 1104, 1167
CfoI GCGC 2 cut(s) 697, 937
Cfr10I RCCGGY 7 cut(s) 73, 108, 158, 383, 611, 1102, 1148
Cfr13I GGNCC 3 cut(s) 708, 760, 864
ClaI ATCGAT 4 cut(s) 30, 36, 630, 669
CpoI CGGWCCG 1 cut(s) 760
CseI GACGC 6 cut(s) 55, 413, 433, 686, 913, 1028
Csp6I GTAC 2 cut(s) 625, 856
CspAI ACCGGT 1 cut(s) 1148
CspI CGGWCCG 1 cut(s) 760
CviAII CATG 2 cut(s) 435, 826
CviQI GTAC 2 cut(s) 625, 856
DdeI CTNAG 3 cut(s) 463, 521, 980
DinI GGCGCC 1 cut(s) 936
DrdI GACNNNNNNGTC 2 cut(s) 569, 1039
DseDI GACNNNNNNGTC 2 cut(s) 569, 1039
EaeI YGGCCR 4 cut(s) 66, 298, 769, 798
Eam1104I CTCTTC 1 cut(s) 1112
EarI CTCTTC 1 cut(s) 1112
EciI GGCGGA 1 cut(s) 825
Ecl136II GAGCTC 2 cut(s) 355, 520
Eco24I GRGCYC 2 cut(s) 357, 522
Eco32I GATATC 2 cut(s) 34, 415
Eco47I GGWCC 1 cut(s) 760
Eco53kI GAGCTC 2 cut(s) 355, 520
Eco57I CTGAAG 1 cut(s) 524
EcoICRI GAGCTC 2 cut(s) 355, 520
EcoO109I RGGNCCY 1 cut(s) 708
EcoRI GAATTC 2 cut(s) 683, 1027
EcoRII CCWGG 2 cut(s) 234, 800
EcoRV GATATC 2 cut(s) 34, 415
EcoT38I GRGCYC 2 cut(s) 357, 522
EgeI GGCGCC 1 cut(s) 936
EheI GGCGCC 1 cut(s) 936
Esp3I CGTCTC 2 cut(s) 38, 770
FaeI CATG 2 cut(s) 438, 829
FaiI YATR 2 cut(s) 436, 827
FaqI GGGAC 3 cut(s) 602, 684, 914
FatI CATG 2 cut(s) 434, 825
FauI CCCGC 1 cut(s) 163
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 2 cut(s) 357, 522
FspBI CTAG 1 cut(s) 1166
GlaI GCGC 2 cut(s) 696, 936
GsaI CCCAGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 8 cut(s) 68, 300, 543, 710, 719, 771, 800, 866
HgaI GACGC 6 cut(s) 55, 413, 433, 686, 913, 1028
HhaI GCGC 2 cut(s) 697, 937
Hin1I GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
Hin1II CATG 2 cut(s) 438, 829
Hin6I GCGC 2 cut(s) 695, 935
HinP1I GCGC 2 cut(s) 695, 935
HinfI GANTC 5 cut(s) 38, 374, 430, 499, 563
HphI GGTGA 4 cut(s) 88, 526, 588, 626
Hpy166II GTNNAC 1 cut(s) 378
Hpy188III TCNNGA 5 cut(s) 52, 421, 487, 814, 1144
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 2 cut(s) 403, 613
HpyCH4III ACNGT 3 cut(s) 600, 764, 1179
HpyCH4IV ACGT 3 cut(s) 180, 858, 924
HpyCH4V TGCA 3 cut(s) 312, 576, 885
HpyF3I CTNAG 3 cut(s) 463, 521, 980
HpySE526I ACGT 3 cut(s) 180, 858, 924
Hsp92I GRCGYC 5 cut(s) 180, 905, 924, 935, 1020
Hsp92II CATG 2 cut(s) 438, 829
HspAI GCGC 2 cut(s) 695, 935
KasI GGCGCC 1 cut(s) 934
Kpn2I TCCGGA 1 cut(s) 51
KroI GCCGGC 2 cut(s) 158, 1102
KroNI GCCGGC 2 cut(s) 160, 1104
LguI GCTCTTC 1 cut(s) 1112
LmnI GCTCC 5 cut(s) 54, 96, 191, 347, 1133
Lsp1109I GCAGC 6 cut(s) 174, 292, 296, 934, 1108, 1149
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 1166
MaeII ACGT 3 cut(s) 180, 858, 924
MaeIII GTNAC 4 cut(s) 532, 594, 1063, 1144
MboII GAAGA 7 cut(s) 28, 253, 355, 490, 829, 1000, 1129
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 357, 522
MluCI AATT 5 cut(s) 253, 313, 683, 1027, 1072
Mly113I GGCGCC 1 cut(s) 935
MlyI GAGTC 2 cut(s) 383, 557
MmeI TCCRAC 5 cut(s) 46, 118, 163, 311, 369
MreI CGCCGGCG 1 cut(s) 1102
MroI TCCGGA 1 cut(s) 51
MroNI GCCGGC 2 cut(s) 158, 1102
MseI TTAA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 309
MspR9I CCNGG 4 cut(s) 88, 236, 802, 932
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 2 cut(s) 236, 802
MvnI CGCG 1 cut(s) 697
NaeI GCCGGC 2 cut(s) 160, 1104
NarI GGCGCC 1 cut(s) 935
NciI CCSGG 2 cut(s) 88, 932
NgoMIV GCCGGC 2 cut(s) 158, 1102
NheI GCTAGC 1 cut(s) 1165
NlaIII CATG 2 cut(s) 438, 829
NlaIV GGNNCC 5 cut(s) 92, 305, 391, 709, 936
NmeAIII GCCGAG 4 cut(s) 475, 534, 747, 877
NmuCI GTSAC 4 cut(s) 532, 594, 1063, 1144
NspI RCATGY 1 cut(s) 829
PaeI GCATGC 1 cut(s) 829
PciSI GCTCTTC 1 cut(s) 1112
PcsI WCGNNNNNNNCGW 6 cut(s) 354, 567, 627, 774, 783, 1037
PdiI GCCGGC 2 cut(s) 160, 1104
PfeI GAWTC 3 cut(s) 38, 430, 499
PflFI GACNNNGTC 1 cut(s) 926
PinAI ACCGGT 1 cut(s) 1148
Ple19I CGATCG 3 cut(s) 30, 198, 680
PleI GAGTC 2 cut(s) 382, 557
PluTI GGCGCC 1 cut(s) 938
PpsI GAGTC 2 cut(s) 382, 557
Psp124BI GAGCTC 2 cut(s) 357, 522
Psp6I CCWGG 2 cut(s) 234, 800
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 2 cut(s) 234, 800
PspN4I GGNNCC 5 cut(s) 92, 305, 391, 709, 936
PspPI GGNCC 3 cut(s) 708, 760, 864
PsuI RGATCY 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 926
PvuI CGATCG 3 cut(s) 30, 198, 680
RgaI GCGATCGC 1 cut(s) 198
RsaI GTAC 2 cut(s) 626, 857
RsaNI GTAC 2 cut(s) 625, 856
RseI CAYNNNNRTG 1 cut(s) 632
Rsr2I CGGWCCG 1 cut(s) 760
RsrII CGGWCCG 1 cut(s) 760
SacI GAGCTC 2 cut(s) 357, 522
SapI GCTCTTC 1 cut(s) 1112
SaqAI TTAA 1 cut(s) 129
Sau96I GGNCC 3 cut(s) 708, 760, 864
SchI GAGTC 2 cut(s) 383, 557
ScrFI CCNGG 4 cut(s) 88, 236, 802, 932
SduI GDGCHC 2 cut(s) 357, 522
SfaAI GCGATCGC 1 cut(s) 198
SfaNI GCATC 1 cut(s) 292
SfiI GGCCNNNNNGGCC 1 cut(s) 716
SfoI GGCGCC 1 cut(s) 936
SgfI GCGATCGC 1 cut(s) 198
SgrAI CRCCGGYG 2 cut(s) 383, 1102
SinI GGWCC 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 419, 812
SmoI CTYRAG 2 cut(s) 419, 812
SphI GCATGC 1 cut(s) 829
Sse9I AATT 5 cut(s) 253, 313, 683, 1027, 1072
SspDI GGCGCC 1 cut(s) 934
SspMI CTAG 1 cut(s) 1166
SstI GAGCTC 2 cut(s) 357, 522
StyD4I CCNGG 4 cut(s) 86, 234, 800, 930
TaaI ACNGT 3 cut(s) 600, 764, 1179
TaiI ACGT 3 cut(s) 183, 861, 927
TaqII GACCGA 2 cut(s) 158, 1049
TasI AATT 5 cut(s) 253, 313, 683, 1027, 1072
TatI WGTACW 1 cut(s) 624
TauI GCSGC 8 cut(s) 68, 203, 206, 209, 372, 402, 800, 1102
TfiI GAWTC 3 cut(s) 38, 430, 499
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 4 cut(s) 532, 594, 1063, 1144
TseI GCWGC 7 cut(s) 162, 280, 309, 947, 1096, 1162, 1169
Tsp45I GTSAC 4 cut(s) 532, 594, 1063, 1144
TspDTI ATGAA 4 cut(s) 29, 95, 247, 730
TspGWI ACGGA 3 cut(s) 339, 559, 1029
TspRI CASTG 1 cut(s) 709
Tth111I GACNNNGTC 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 760
XapI RAATTY 4 cut(s) 253, 683, 1027, 1072
XceI RCATGY 1 cut(s) 829
XspI CTAG 1 cut(s) 1166
ZraI GACGTC 2 cut(s) 181, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.