Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Forward (+)

8918267 .. 8919683

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCCGAGCAGATACCCAGGAGCAGTAACACAAGACTGGGAACCAGTAGTTCTCCACAAATCAAAACAAAAGAGCCAAGACCTACGCGATCCGAAAGCGGTTAACGCAGCTCTGAGAAACGGTGTCGCGGTTCAAACGGTTAAGAAATTCGATGCCGGTTCGAACAAAAAGGGGAAATCTACGGCGGTTCCGGTGATTAACACGAAGAAGCTGGAAGAAGAAACAGAGCCTGCGGCGATGGATCGTGTGAAAGCAGAGGTGAGGTTGATGATACAGAAAGCGAGATTGGAGAAGAAGATGTCACAAGCGGATTTGGCGAAACAGATCAATGAGAGGACTCAGGTAGTTCAGGAATATGAGAATGGTAAAGCTGTTCCTAATCAGGCTGTGCTTGCGAAGATGGAGAAGGTTCTAGGTGTTAAACTTAGGGGTAAAATTGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

9.99

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 83	7.9e-23	Multiprotein bridging factor 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	87, 128
AciI	CCGC	5 cut(s)	98, 128, 185, 233, 308
AclWI	GGATC	2 cut(s)	83, 249
AcsI	RAATTY	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	3 cut(s)	110, 211, 371
AluI	AGCT	3 cut(s)	110, 211, 371
AlwI	GGATC	2 cut(s)	83, 249
AlwNI	CAGNNNCTG	1 cut(s)	230
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	205, 271
AsuII	TTCGAA	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	2 cut(s)	232, 394
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	2 cut(s)	108, 234
BlsI	GCNGC	2 cut(s)	109, 235
Bme1390I	CCNGG	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	42, 189
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	16
BsaWI	WCCGGW	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	41, 44
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	104, 353
BseNI	ACTGG	2 cut(s)	41, 44
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	87, 128
BsiSI	CCGG	2 cut(s)	156, 191
Bsp119I	TTCGAA	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	88, 241, 324
BspACI	CCGC	5 cut(s)	98, 128, 185, 233, 308
BspCNI	CTCAG	2 cut(s)	105, 352
BspFNI	CGCG	2 cut(s)	87, 128
BspLI	GGNNCC	2 cut(s)	42, 189
BspPI	GGATC	2 cut(s)	83, 249
BspT104I	TTCGAA	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	41, 44
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	3 cut(s)	88, 241, 324
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	122, 139
BstBI	TTCGAA	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	231, 393
BstDEI	CTNAG	3 cut(s)	113, 339, 425
BstFNI	CGCG	2 cut(s)	87, 128
BstKTI	GATC	3 cut(s)	91, 244, 327
BstMBI	GATC	3 cut(s)	88, 241, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 314, 392
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	16
BstUI	CGCG	2 cut(s)	87, 128
BstV1I	GCAGC	1 cut(s)	119
BtgZI	GCGATG	1 cut(s)	251
Cac8I	GCNNGC	2 cut(s)	231, 393
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	155
CviJI	RGCY	6 cut(s)	75, 110, 211, 229, 371, 386
CviKI_1	RGCY	6 cut(s)	75, 110, 211, 229, 371, 386
DdeI	CTNAG	3 cut(s)	113, 339, 425
DpnI	GATC	3 cut(s)	90, 243, 326
DpnII	GATC	3 cut(s)	88, 241, 324
EcoRII	CCWGG	1 cut(s)	16
FaiI	YATR	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	108, 234
Fsp4HI	GCNGC	2 cut(s)	108, 234
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	2 cut(s)	108, 234
HapII	CCGG	2 cut(s)	156, 191
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	337
HpaI	GTTAAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	156, 191
HphI	GGTGA	2 cut(s)	205, 271
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	93, 114
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	2 cut(s)	122, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 314, 392
HpyF3I	CTNAG	3 cut(s)	113, 339, 425
KspAI	GTTAAC	1 cut(s)	103
Kzo9I	GATC	3 cut(s)	88, 241, 324
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	25, 300
MalI	GATC	3 cut(s)	90, 243, 326
MboI	GATC	3 cut(s)	88, 241, 324
MboII	GAAGA	6 cut(s)	217, 227, 230, 304, 307, 409
MluCI	AATT	2 cut(s)	146, 435
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	250, 255, 327
MseI	TTAA	4 cut(s)	102, 141, 198, 420
MspI	CCGG	2 cut(s)	156, 191
MspR9I	CCNGG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	18
MvnI	CGCG	2 cut(s)	87, 128
MwoI	GCNNNNNNNGC	3 cut(s)	104, 314, 392
NdeII	GATC	3 cut(s)	88, 241, 324
NlaIV	GGNNCC	2 cut(s)	42, 189
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	300
NspV	TTCGAA	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	109, 235
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	42, 189
PstNI	CAGNNNCTG	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	102, 141, 198, 420
SatI	GCNGC	2 cut(s)	108, 234
Sau3AI	GATC	3 cut(s)	88, 241, 324
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	9 cut(s)	84, 112, 213, 261, 266, 345, 373, 411, 418
SfaNI	GCATC	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	161
Sse9I	AATT	2 cut(s)	146, 435
SsiI	CCGC	5 cut(s)	98, 128, 185, 233, 308
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	122, 139
TaqI	TCGA	2 cut(s)	150, 161
TasI	AATT	2 cut(s)	146, 435
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	4 cut(s)	102, 141, 198, 420
Tru9I	TTAA	4 cut(s)	102, 141, 198, 420
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.