Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Reverse (-)

14800720 .. 14801151

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1187400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCGAGCCGAAACTCAGGAGTTATGGTCCAGGACTGGGAGCCGGTGGTCCTCCAGAAGAAGCCCAAGTCCAGTGCCCTCCGCGACCCGAAGGCGGTGAACCAGGCGATCCGGTCGGGCGCGCCGGTCCAGACCATCAAGAAGTTCGACGCGGGATCAAACAAGAAGACGGCACCAGTTGTCAGCGTGAAGAAGCTCGAGGAGGCGGCCGAGCCAGCGGCGCTGGACCGGGTCTCGACGGAGGTGCGACTGGCGATACAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCGGAACTTGCGAAGCGGATCAACGAGCGGCCTCAGGTGGAGCAGGAGTACGAGAACGGGAAGGCGGTGCCGAACCAGGCGGTGCTGGCGAAGATGGAGAGGGTTCTGGAAGTGAAGCTCAGGGGCAAAGTTGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

144

Amino Acids

15.79

Weight (kDa)

10.08

Isoelectric Point (pI)

51.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 78	2.1e-18	Multiprotein bridging factor 1
HTH_3	PF01381	86 - 138	6.8e-11	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	172, 358
AccBSI	CCGCTC	1 cut(s)	319
AccII	CGCG	4 cut(s)	84, 122, 152, 268
AclWI	GGATC	3 cut(s)	103, 163, 317
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	37, 94
AjnI	CCWGG	4 cut(s)	30, 102, 288, 366
AluBI	AGCT	2 cut(s)	196, 409
AluI	AGCT	2 cut(s)	196, 409
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	3 cut(s)	103, 163, 317
Ama87I	CYCGRG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	207, 320
AscI	GGCGCGCC	1 cut(s)	120
AspLEI	GCGC	4 cut(s)	122, 124, 223, 268
AspS9I	GGNCC	4 cut(s)	28, 49, 127, 226
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	4 cut(s)	28, 49, 127, 226
AxyI	CCTNAGG	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	79
BanI	GGYRCC	2 cut(s)	172, 358
BbsI	GAAGAC	1 cut(s)	173
BccI	CCATC	2 cut(s)	143, 379
BceAI	ACGGC	1 cut(s)	186
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	4 cut(s)	32, 104, 290, 368
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	224
BisI	GCNGC	4 cut(s)	207, 219, 269, 320
BlsI	GCNGC	4 cut(s)	208, 220, 270, 321
Bme1390I	CCNGG	5 cut(s)	32, 104, 230, 290, 368
Bme18I	GGWCC	4 cut(s)	28, 49, 127, 226
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	4 cut(s)	28, 49, 127, 226
BmiI	GGNNCC	3 cut(s)	42, 174, 360
BmrFI	CCNGG	5 cut(s)	32, 104, 230, 290, 368
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	38, 293
Bpu10I	CCTNAGC	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	230
BsaI	GGTCTC	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	4 cut(s)	12, 42, 323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 94
Bse118I	RCCGGY	2 cut(s)	43, 124
Bse1I	ACTGG	4 cut(s)	41, 72, 176, 255
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	4 cut(s)	32, 104, 290, 368
BseLI	CCNNNNNNNGG	2 cut(s)	37, 94
BseMII	CTCAG	3 cut(s)	30, 338, 424
BseNI	ACTGG	4 cut(s)	41, 72, 176, 255
BsePI	GCGCGC	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	79
BseX3I	CGGCCG	1 cut(s)	207
Bsh1236I	CGCG	4 cut(s)	84, 122, 152, 268
Bsh1285I	CGRYCG	2 cut(s)	116, 210
BshFI	GGCC	2 cut(s)	209, 322
BshNI	GGYRCC	2 cut(s)	172, 358
BsiEI	CGRYCG	2 cut(s)	116, 210
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	4 cut(s)	44, 112, 125, 229
BslI	CCNNNNNNNGG	2 cut(s)	37, 94
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	209, 322
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	108, 155, 309
BspANI	GGCC	2 cut(s)	209, 322
BspCNI	CTCAG	3 cut(s)	29, 337, 423
BspFNI	CGCG	4 cut(s)	84, 122, 152, 268
BspLI	GGNNCC	3 cut(s)	42, 174, 360
BspPI	GGATC	3 cut(s)	103, 163, 317
BspT107I	GGYRCC	2 cut(s)	172, 358
BspTNI	GGTCTC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	319
BsrFI	RCCGGY	2 cut(s)	43, 124
BsrI	ACTGG	4 cut(s)	41, 72, 176, 255
BssAI	RCCGGY	2 cut(s)	43, 124
BssHII	GCGCGC	1 cut(s)	120
BssMI	GATC	3 cut(s)	108, 155, 309
Bst2UI	CCWGG	4 cut(s)	32, 104, 290, 368
BstC8I	GCNNGC	3 cut(s)	122, 216, 378
BstDEI	CTNAG	3 cut(s)	16, 324, 410
BstFNI	CGCG	4 cut(s)	84, 122, 152, 268
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	4 cut(s)	122, 124, 223, 268
BstKTI	GATC	3 cut(s)	111, 158, 312
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	108, 155, 309
BstMCI	CGRYCG	2 cut(s)	116, 210
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 220, 299, 377
BstNI	CCWGG	4 cut(s)	32, 104, 290, 368
BstSCI	CCNGG	5 cut(s)	30, 102, 228, 288, 366
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	4 cut(s)	84, 122, 152, 268
BstV2I	GAAGAC	1 cut(s)	173
BstZI	CGGCCG	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	2 cut(s)	209, 322
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	122, 216, 378
CfoI	GCGC	4 cut(s)	122, 124, 223, 268
Cfr10I	RCCGGY	2 cut(s)	43, 124
Cfr13I	GGNCC	4 cut(s)	28, 49, 127, 226
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	340
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	16, 324, 410
DpnI	GATC	3 cut(s)	110, 157, 311
DpnII	GATC	3 cut(s)	108, 155, 309
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	308
EclXI	CGGCCG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	4 cut(s)	28, 49, 127, 226
Eco52I	CGGCCG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	4 cut(s)	30, 102, 288, 366
FaiI	YATR	1 cut(s)	26
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	4 cut(s)	207, 219, 269, 320
Fsp4HI	GCNGC	4 cut(s)	207, 219, 269, 320
GlaI	GCGC	4 cut(s)	121, 123, 222, 267
GluI	GCNGC	4 cut(s)	207, 219, 269, 320
GsuI	CTGGAG	2 cut(s)	38, 293
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	209, 322
HapII	CCGG	4 cut(s)	44, 112, 125, 229
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	4 cut(s)	122, 124, 223, 268
Hin6I	GCGC	4 cut(s)	120, 122, 221, 266
HinP1I	GCGC	4 cut(s)	120, 122, 221, 266
HpaII	CCGG	4 cut(s)	44, 112, 125, 229
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	6 cut(s)	18, 55, 130, 139, 235, 398
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	152, 241
HpyAV	CCTTC	3 cut(s)	85, 256, 346
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 220, 299, 377
HpyF3I	CTNAG	3 cut(s)	16, 324, 410
HspAI	GCGC	4 cut(s)	120, 122, 221, 266
Kzo9I	GATC	3 cut(s)	108, 155, 309
LmnI	GCTCC	2 cut(s)	40, 331
MalI	GATC	3 cut(s)	110, 157, 311
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	3 cut(s)	108, 155, 309
MboII	GAAGA	6 cut(s)	70, 178, 202, 289, 292, 394
MhlI	GDGCHC	1 cut(s)	79
MnlI	CCTC	7 cut(s)	62, 89, 193, 196, 235, 333, 384
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	4 cut(s)	44, 112, 125, 229
MspR9I	CCNGG	5 cut(s)	32, 104, 230, 290, 368
MvaI	CCWGG	4 cut(s)	32, 104, 290, 368
MvnI	CGCG	4 cut(s)	84, 122, 152, 268
MwoI	GCNNNNNNNGC	4 cut(s)	215, 220, 299, 377
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	108, 155, 309
NlaIV	GGNNCC	3 cut(s)	42, 174, 360
NmeAIII	GCCGAG	2 cut(s)	30, 235
PaeR7I	CTCGAG	1 cut(s)	197
PalAI	GGCGCGCC	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	120
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	208, 220, 270, 321
Psp6I	CCWGG	4 cut(s)	30, 102, 288, 366
PspGI	CCWGG	4 cut(s)	30, 102, 288, 366
PspN4I	GGNNCC	3 cut(s)	42, 174, 360
PspPI	GGNCC	4 cut(s)	28, 49, 127, 226
PspXI	VCTCGAGB	1 cut(s)	197
PsyI	GACNNNGTC	1 cut(s)	230
PteI	GCGCGC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SatI	GCNGC	4 cut(s)	207, 219, 269, 320
Sau3AI	GATC	3 cut(s)	108, 155, 309
Sau96I	GGNCC	4 cut(s)	28, 49, 127, 226
ScrFI	CCNGG	5 cut(s)	32, 104, 230, 290, 368
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	4 cut(s)	198, 246, 330, 411
Sfr274I	CTCGAG	1 cut(s)	197
SgsI	GGCGCGCC	1 cut(s)	120
SinI	GGWCC	4 cut(s)	28, 49, 127, 226
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
StyD4I	CCNGG	5 cut(s)	30, 102, 228, 288, 366
TaqI	TCGA	3 cut(s)	147, 198, 236
TauI	GCSGC	4 cut(s)	209, 221, 271, 322
TscAI	CASTG	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	79
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	4 cut(s)	28, 49, 127, 226
XhoI	CTCGAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.