Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Forward (+)

20188687 .. 20189901

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G229000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCGAGCAGAAACCCAGGAGTGATAACCCAGGACTGGGAGCCGGTGGTCATCCACAAGTCCAGGCCCAAGGGTCAAGACCTCCGCGACCCGAAGGCTGTGAACCAGGCGCTCCGGTCCGGCGCGCCGATCCAGACCATAAAGAAATTCGACGCGGGCTCCAACAAGAAGGCAGCGCCGGTCGTCAGCGTGAAGAAGCTCGAGGAAGGGACCGAGCCGGCGGCGCTGGACCGGGTCTCGACCGATGTGAGGCAGGCCATACAGAAGGCGCGTCTGGCGAAGAAGTTGAGCCAGGCCGACCTGGCCAAGCGGATCAACGAGCGGCCTCAGGTGGTTCAGGAGTACGAGAATGGCAAGGCGGTACCGAATCAGGCCGTGCTCTCCAAGATGGAGAGGATTCTGGAAGTGAAGCTCAGGGGCAAAGTTGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

10.22

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	322
AccII	CGCG	4 cut(s)	87, 125, 155, 271
AciI	CCGC	6 cut(s)	85, 155, 221, 310, 322, 359
AclWI	GGATC	2 cut(s)	124, 320
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	2 cut(s)	344, 363
AfiI	CCNNNNNNNGG	3 cut(s)	36, 37, 249
AjnI	CCWGG	6 cut(s)	16, 30, 62, 105, 291, 300
AluBI	AGCT	2 cut(s)	199, 412
AluI	AGCT	2 cut(s)	199, 412
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	2 cut(s)	124, 320
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	6 cut(s)	65, 255, 294, 303, 323, 372
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	146
AscI	GGCGCGCC	1 cut(s)	123
Asp718I	GGTACC	1 cut(s)	361
AspLEI	GCGC	6 cut(s)	112, 125, 127, 178, 226, 271
AspS9I	GGNCC	4 cut(s)	66, 117, 210, 229
AsuC2I	CCSGG	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	3 cut(s)	117, 210, 229
AxyI	CCTNAGG	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	6 cut(s)	18, 32, 64, 107, 293, 302
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	241
BfoI	RGCGCY	3 cut(s)	113, 179, 227
BglI	GCCNNNNNGGC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	174, 222, 323
BlsI	GCNGC	3 cut(s)	175, 223, 324
Bme1390I	CCNGG	7 cut(s)	18, 32, 64, 107, 233, 293, 302
Bme18I	GGWCC	3 cut(s)	117, 210, 229
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	4 cut(s)	66, 117, 210, 229
BmiI	GGNNCC	4 cut(s)	42, 160, 211, 363
BmrFI	CCNGG	7 cut(s)	18, 32, 64, 107, 233, 293, 302
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
Bpu10I	CCTNAGC	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	16, 30, 69
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 37, 249
Bse118I	RCCGGY	3 cut(s)	43, 178, 217
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	6 cut(s)	18, 32, 64, 107, 293, 302
BseDI	CCNNGG	3 cut(s)	16, 30, 69
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	36, 37, 249
BseMII	CTCAG	2 cut(s)	341, 427
BseNI	ACTGG	1 cut(s)	41
BsePI	GCGCGC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	4 cut(s)	87, 125, 155, 271
Bsh1285I	CGRYCG	2 cut(s)	183, 243
BshFI	GGCC	6 cut(s)	67, 257, 296, 305, 325, 374
BshNI	GGYRCC	1 cut(s)	361
BsiEI	CGRYCG	2 cut(s)	183, 243
BsiHKAI	GWGCWC	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	6 cut(s)	44, 115, 120, 179, 218, 232
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	3 cut(s)	36, 37, 249
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	6 cut(s)	67, 257, 296, 305, 325, 374
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	161, 381
Bsp143I	GATC	2 cut(s)	129, 312
BspACI	CCGC	6 cut(s)	85, 155, 221, 310, 322, 359
BspANI	GGCC	6 cut(s)	67, 257, 296, 305, 325, 374
BspCNI	CTCAG	2 cut(s)	340, 426
BspFNI	CGCG	4 cut(s)	87, 125, 155, 271
BspLI	GGNNCC	4 cut(s)	42, 160, 211, 363
BspPI	GGATC	2 cut(s)	124, 320
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	322
BsrFI	RCCGGY	3 cut(s)	43, 178, 217
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	3 cut(s)	43, 178, 217
BssECI	CCNNGG	3 cut(s)	16, 30, 69
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	2 cut(s)	129, 312
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	6 cut(s)	18, 32, 64, 107, 293, 302
BstC8I	GCNNGC	4 cut(s)	125, 157, 219, 255
BstDEI	CTNAG	2 cut(s)	327, 413
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	4 cut(s)	87, 125, 155, 271
BstH2I	RGCGCY	3 cut(s)	113, 179, 227
BstHHI	GCGC	6 cut(s)	112, 125, 127, 178, 226, 271
BstKTI	GATC	2 cut(s)	132, 315
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	129, 312
BstMCI	CGRYCG	2 cut(s)	183, 243
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 275, 302, 426
BstNI	CCWGG	6 cut(s)	18, 32, 64, 107, 293, 302
BstSCI	CCNGG	7 cut(s)	16, 30, 62, 105, 231, 291, 300
BstUI	CGCG	4 cut(s)	87, 125, 155, 271
BstV1I	GCAGC	1 cut(s)	185
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	6 cut(s)	67, 257, 296, 305, 325, 374
BtsCI	GGATG	1 cut(s)	51
Cac8I	GCNNGC	4 cut(s)	125, 157, 219, 255
CfoI	GCGC	6 cut(s)	112, 125, 127, 178, 226, 271
Cfr10I	RCCGGY	3 cut(s)	43, 178, 217
Cfr13I	GGNCC	4 cut(s)	66, 117, 210, 229
CpoI	CGGWCCG	1 cut(s)	117
CseI	GACGC	2 cut(s)	161, 260
Csp6I	GTAC	2 cut(s)	343, 362
CspI	CGGWCCG	1 cut(s)	117
CviQI	GTAC	2 cut(s)	343, 362
DdeI	CTNAG	2 cut(s)	327, 413
DpnI	GATC	2 cut(s)	131, 314
DpnII	GATC	2 cut(s)	129, 312
EaeI	YGGCCR	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	3 cut(s)	117, 210, 229
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	6 cut(s)	16, 30, 62, 105, 291, 300
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	2 cut(s)	140, 260
FaqI	GGGAC	1 cut(s)	223
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	3 cut(s)	174, 222, 323
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	174, 222, 323
GlaI	GCGC	6 cut(s)	111, 124, 126, 177, 225, 270
GluI	GCNGC	3 cut(s)	174, 222, 323
HaeII	RGCGCY	3 cut(s)	113, 179, 227
HaeIII	GGCC	6 cut(s)	67, 257, 296, 305, 325, 374
HapII	CCGG	6 cut(s)	44, 115, 120, 179, 218, 232
HgaI	GACGC	2 cut(s)	161, 260
HhaI	GCGC	6 cut(s)	112, 125, 127, 178, 226, 271
Hin6I	GCGC	6 cut(s)	110, 123, 125, 176, 224, 269
HinP1I	GCGC	6 cut(s)	110, 123, 125, 176, 224, 269
HinfI	GANTC	2 cut(s)	367, 397
HpaII	CCGG	6 cut(s)	44, 115, 120, 179, 218, 232
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	5 cut(s)	77, 133, 238, 338, 401
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	4 cut(s)	88, 163, 200, 259
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 275, 302, 426
HpyF3I	CTNAG	2 cut(s)	327, 413
HspAI	GCGC	6 cut(s)	110, 123, 125, 176, 224, 269
KpnI	GGTACC	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	129, 312
LmnI	GCTCC	3 cut(s)	40, 117, 164
Lsp1109I	GCAGC	1 cut(s)	185
MalI	GATC	2 cut(s)	131, 314
MbiI	CCGCTC	1 cut(s)	322
MboI	GATC	2 cut(s)	129, 312
MboII	GAAGA	2 cut(s)	205, 292
MhlI	GDGCHC	2 cut(s)	161, 381
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	1 cut(s)	146
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	5 cut(s)	92, 196, 243, 336, 387
Mox20I	TGGCCA	1 cut(s)	305
MroNI	GCCGGC	1 cut(s)	217
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	6 cut(s)	44, 115, 120, 179, 218, 232
MspR9I	CCNGG	7 cut(s)	18, 32, 64, 107, 233, 293, 302
MvaI	CCWGG	6 cut(s)	18, 32, 64, 107, 293, 302
MvnI	CGCG	4 cut(s)	87, 125, 155, 271
MwoI	GCNNNNNNNGC	4 cut(s)	223, 275, 302, 426
NaeI	GCCGGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	129, 312
NgoMIV	GCCGGC	1 cut(s)	217
NlaIV	GGNNCC	4 cut(s)	42, 160, 211, 363
NmeAIII	GCCGAG	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	200
PalAI	GGCGCGCC	1 cut(s)	123
PauI	GCGCGC	1 cut(s)	123
PdiI	GCCGGC	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	367, 397
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	175, 223, 324
Psp6I	CCWGG	6 cut(s)	16, 30, 62, 105, 291, 300
PspGI	CCWGG	6 cut(s)	16, 30, 62, 105, 291, 300
PspN4I	GGNNCC	4 cut(s)	42, 160, 211, 363
PspPI	GGNCC	4 cut(s)	66, 117, 210, 229
PspXI	VCTCGAGB	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	233
PteI	GCGCGC	1 cut(s)	123
RsaI	GTAC	2 cut(s)	344, 363
RsaNI	GTAC	2 cut(s)	343, 362
Rsr2I	CGGWCCG	1 cut(s)	117
RsrII	CGGWCCG	1 cut(s)	117
SatI	GCNGC	3 cut(s)	174, 222, 323
Sau3AI	GATC	2 cut(s)	129, 312
Sau96I	GGNCC	4 cut(s)	66, 117, 210, 229
ScrFI	CCNGG	7 cut(s)	18, 32, 64, 107, 233, 293, 302
SduI	GDGCHC	2 cut(s)	161, 381
SetI	ASST	5 cut(s)	84, 201, 303, 333, 414
SfiI	GGCCNNNNNGGCC	1 cut(s)	302
Sfr274I	CTCGAG	1 cut(s)	200
SgsI	GGCGCGCC	1 cut(s)	123
SinI	GGWCC	3 cut(s)	117, 210, 229
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	6 cut(s)	85, 155, 221, 310, 322, 359
StyD4I	CCNGG	7 cut(s)	16, 30, 62, 105, 231, 291, 300
StyI	CCWWGG	1 cut(s)	69
TaqI	TCGA	3 cut(s)	150, 201, 239
TaqII	GACCGA	2 cut(s)	227, 257
TasI	AATT	1 cut(s)	146
TauI	GCSGC	2 cut(s)	224, 325
TfiI	GAWTC	2 cut(s)	367, 397
TseI	GCWGC	1 cut(s)	173
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	3 cut(s)	117, 210, 229
XapI	RAATTY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.