Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Reverse (-)

3919158 .. 3919941

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1050200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCGATCCGAAACCCAGGAGTCATATCCCAGGACTGGGAGCCGGTGGTCCTCCAGAAGAAGCCCAATAAGGCCAGCGCCCTCCGCGACCCGAAGGCGGTGAACCAGGCGATGCGGTCGGGTGCGCCGGTCCAGACGATCAAGAAATTCGACGGGGGCTCGAACAAGAAGGCGGGGCCGGTGGTCAGCGTGAAGAAGCTCGAGGAGGCGGCCGAGCCGGCGGCGCTGGAGCGGGTCTCGACGGAGGTGCGACAGGCGACACAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCGGATCAACGAGCGGCCACAGGTGGTGCAGGAGTATGAGAACGGGAAGGCGGTGCCGAACCAGGCGGTGCTGGCGAAGATGGAGAGGGTTCTGGGAGTCAAGCTCAGGGGCAAGGTTGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

145

Amino Acids

15.77

Weight (kDa)

10.25

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 79	5e-20	Multiprotein bridging factor 1
HTH_3	PF01381	89 - 139	1.5e-14	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccBSI	CCGCTC	2 cut(s)	232, 322
AccII	CGCG	2 cut(s)	87, 271
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	210, 323
AcsI	RAATTY	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	36, 37, 97
AjnI	CCWGG	5 cut(s)	16, 30, 105, 291, 369
AluBI	AGCT	3 cut(s)	199, 301, 412
AluI	AGCT	3 cut(s)	199, 301, 412
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	4 cut(s)	72, 176, 210, 323
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	4 cut(s)	80, 127, 226, 271
AspS9I	GGNCC	3 cut(s)	49, 130, 176
AsuHPI	GGTGA	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	49, 130
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	161
BccI	CCATC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	5 cut(s)	18, 32, 107, 293, 371
BcoDI	GTCTC	1 cut(s)	241
BfoI	RGCGCY	2 cut(s)	81, 227
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	210, 222, 272, 323
BlsI	GCNGC	4 cut(s)	211, 223, 273, 324
Bme1390I	CCNGG	5 cut(s)	18, 32, 107, 293, 371
Bme18I	GGWCC	2 cut(s)	49, 130
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	3 cut(s)	49, 130, 176
BmiI	GGNNCC	3 cut(s)	42, 177, 363
BmrFI	CCNGG	5 cut(s)	18, 32, 107, 293, 371
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	46
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 396, 428
BpmI	CTGGAG	3 cut(s)	38, 248, 296
Bpu10I	CCTNAGC	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	2 cut(s)	16, 30
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 37, 97
Bse118I	RCCGGY	4 cut(s)	43, 127, 178, 217
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	5 cut(s)	18, 32, 107, 293, 371
BseDI	CCNNGG	2 cut(s)	16, 30
BseLI	CCNNNNNNNGG	3 cut(s)	36, 37, 97
BseMII	CTCAG	1 cut(s)	427
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	218
BseX3I	CGGCCG	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	87, 271
Bsh1285I	CGRYCG	2 cut(s)	119, 213
BshFI	GGCC	4 cut(s)	74, 178, 212, 325
BshNI	GGYRCC	1 cut(s)	361
BsiEI	CGRYCG	2 cut(s)	119, 213
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	4 cut(s)	44, 128, 179, 218
BslI	CCNNNNNNNGG	3 cut(s)	36, 37, 97
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	74, 178, 212, 325
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	6, 138, 312
BspANI	GGCC	4 cut(s)	74, 178, 212, 325
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	87, 271
BspLI	GGNNCC	3 cut(s)	42, 177, 363
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	361
BspTNI	GGTCTC	1 cut(s)	241
BsrBI	CCGCTC	2 cut(s)	232, 322
BsrFI	RCCGGY	4 cut(s)	43, 127, 178, 217
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	4 cut(s)	43, 127, 178, 217
BssECI	CCNNGG	2 cut(s)	16, 30
BssMI	GATC	3 cut(s)	6, 138, 312
Bst2UI	CCWGG	5 cut(s)	18, 32, 107, 293, 371
BstC8I	GCNNGC	4 cut(s)	76, 219, 303, 381
BstDEI	CTNAG	1 cut(s)	413
BstFNI	CGCG	2 cut(s)	87, 271
BstH2I	RGCGCY	2 cut(s)	81, 227
BstHHI	GCGC	4 cut(s)	80, 127, 226, 271
BstKTI	GATC	3 cut(s)	9, 141, 315
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	6, 138, 312
BstMCI	CGRYCG	2 cut(s)	119, 213
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 218, 223, 302, 307, 380
BstNI	CCWGG	5 cut(s)	18, 32, 107, 293, 371
BstSCI	CCNGG	5 cut(s)	16, 30, 105, 291, 369
BstUI	CGCG	2 cut(s)	87, 271
BstZI	CGGCCG	1 cut(s)	210
BsuRI	GGCC	4 cut(s)	74, 178, 212, 325
BtgZI	GCGATG	1 cut(s)	125
Cac8I	GCNNGC	4 cut(s)	76, 219, 303, 381
CfoI	GCGC	4 cut(s)	80, 127, 226, 271
Cfr10I	RCCGGY	4 cut(s)	43, 127, 178, 217
Cfr13I	GGNCC	3 cut(s)	49, 130, 176
DdeI	CTNAG	1 cut(s)	413
DpnI	GATC	3 cut(s)	8, 140, 314
DpnII	GATC	3 cut(s)	6, 138, 312
EaeI	YGGCCR	2 cut(s)	210, 323
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	311
EclXI	CGGCCG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	2 cut(s)	49, 130
Eco52I	CGGCCG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	200
EcoRII	CCWGG	5 cut(s)	16, 30, 105, 291, 369
EcoT38I	GRGCYC	1 cut(s)	161
FaiI	YATR	2 cut(s)	26, 345
FauI	CCCGC	2 cut(s)	166, 225
Fnu4HI	GCNGC	4 cut(s)	210, 222, 272, 323
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	4 cut(s)	210, 222, 272, 323
GlaI	GCGC	4 cut(s)	79, 126, 225, 270
GluI	GCNGC	4 cut(s)	210, 222, 272, 323
GsuI	CTGGAG	3 cut(s)	38, 248, 296
HaeII	RGCGCY	2 cut(s)	81, 227
HaeIII	GGCC	4 cut(s)	74, 178, 212, 325
HapII	CCGG	4 cut(s)	44, 128, 179, 218
HhaI	GCGC	4 cut(s)	80, 127, 226, 271
Hin6I	GCGC	4 cut(s)	78, 125, 224, 269
HinP1I	GCGC	4 cut(s)	78, 125, 224, 269
HinfI	GANTC	2 cut(s)	21, 405
HpaII	CCGG	4 cut(s)	44, 128, 179, 218
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	11
Hpy188III	TCNNGA	4 cut(s)	55, 133, 142, 238
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	2 cut(s)	155, 244
HpyAV	CCTTC	4 cut(s)	88, 163, 259, 349
HpyCH4V	TGCA	1 cut(s)	337
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 218, 223, 302, 307, 380
HpyF3I	CTNAG	1 cut(s)	413
HspAI	GCGC	4 cut(s)	78, 125, 224, 269
KroI	GCCGGC	1 cut(s)	217
KroNI	GCCGGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	6, 138, 312
LmnI	GCTCC	3 cut(s)	40, 229, 298
LweI	GCATC	1 cut(s)	102
MalI	GATC	3 cut(s)	8, 140, 314
MbiI	CCGCTC	2 cut(s)	232, 322
MboI	GATC	3 cut(s)	6, 138, 312
MboII	GAAGA	5 cut(s)	70, 205, 292, 295, 397
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	30, 414
MnlI	CCTC	6 cut(s)	62, 92, 196, 199, 238, 387
MroNI	GCCGGC	1 cut(s)	217
MspI	CCGG	4 cut(s)	44, 128, 179, 218
MspR9I	CCNGG	5 cut(s)	18, 32, 107, 293, 371
MvaI	CCWGG	5 cut(s)	18, 32, 107, 293, 371
MvnI	CGCG	2 cut(s)	87, 271
MwoI	GCNNNNNNNGC	6 cut(s)	84, 218, 223, 302, 307, 380
NaeI	GCCGGC	1 cut(s)	219
NdeII	GATC	3 cut(s)	6, 138, 312
NgoMIV	GCCGGC	1 cut(s)	217
NlaIV	GGNNCC	3 cut(s)	42, 177, 363
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	200
PdiI	GCCGGC	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	211, 223, 273, 324
PleI	GAGTC	2 cut(s)	29, 413
PpsI	GAGTC	2 cut(s)	29, 413
Psp6I	CCWGG	5 cut(s)	16, 30, 105, 291, 369
PspGI	CCWGG	5 cut(s)	16, 30, 105, 291, 369
PspN4I	GGNNCC	3 cut(s)	42, 177, 363
PspPI	GGNCC	3 cut(s)	49, 130, 176
PspXI	VCTCGAGB	1 cut(s)	200
SatI	GCNGC	4 cut(s)	210, 222, 272, 323
Sau3AI	GATC	3 cut(s)	6, 138, 312
Sau96I	GGNCC	3 cut(s)	49, 130, 176
SchI	GAGTC	2 cut(s)	30, 414
ScrFI	CCNGG	5 cut(s)	18, 32, 107, 293, 371
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	6 cut(s)	201, 249, 303, 333, 414, 426
SfaNI	GCATC	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	49, 130
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	146
StyD4I	CCNGG	5 cut(s)	16, 30, 105, 291, 369
TaqI	TCGA	4 cut(s)	150, 161, 201, 239
TasI	AATT	1 cut(s)	146
TauI	GCSGC	4 cut(s)	212, 224, 274, 325
TspGWI	ACGGA	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	49, 130
XapI	RAATTY	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.