Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Forward (+)

88200486 .. 88200920

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCGAACCGATTCGCCGGAGCTTTGACTCAGGACTGGGAGCCGGTGGTAATCCACAAGGCCAAGCCAAAGCCGCAAGACCTCCGCAAGCCCAAGGTGGTGAACCAGGCCCTCCGGACCGGCGCGCCGGTCCAGACGATCAAGAAGTCCGATGCCGGCCATAACAAGAAGGCGGCTCCGGCCGTGAGCGTGAAGAAGCTGGACGAGGCGGCTGAGCCGGCGGCGCTGGACCGGGTCTCGGCGGATGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCCGACCTAGCCAAGCGGATCAACGAGCTTCCTAAGGTGGTTCAGGAGTATGAGAACGGGAAGGCCGTACCGAACCAGGCGGTCCTGGCGAAGATGGAGAGGGCTCTGGAGGTCAAGCTCAGGGGCAAAGTCGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

144

Amino Acids

15.81

Weight (kDa)

10.15

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 79	3.9e-19	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 139	1.3e-11	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	125, 271
AccIII	TCCGGA	1 cut(s)	114
AciI	CCGC	9 cut(s)	74, 85, 173, 209, 221, 242, 271, 310, 374
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	2 cut(s)	157, 180
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	238
AjnI	CCWGG	4 cut(s)	105, 291, 369, 378
AluBI	AGCT	4 cut(s)	23, 199, 322, 412
AluI	AGCT	4 cut(s)	23, 199, 322, 412
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	320
Aor13HI	TCCGGA	1 cut(s)	114
AoxI	GGCC	6 cut(s)	60, 108, 157, 180, 294, 357
AscI	GGCGCGCC	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	125, 127, 226, 271
AspS9I	GGNCC	5 cut(s)	109, 117, 130, 229, 376
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	4 cut(s)	117, 130, 229, 376
AxyI	CCTNAGG	1 cut(s)	327
BanII	GRGCYC	1 cut(s)	400
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	2 cut(s)	167, 344
BciT130I	CCWGG	4 cut(s)	107, 293, 371, 380
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	302
BfoI	RGCGCY	1 cut(s)	227
BisI	GCNGC	5 cut(s)	74, 174, 210, 222, 272
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	5 cut(s)	75, 175, 211, 223, 273
Bme1390I	CCNGG	5 cut(s)	107, 233, 293, 371, 380
Bme18I	GGWCC	4 cut(s)	117, 130, 229, 376
BmgT120I	GGNCC	5 cut(s)	109, 117, 130, 229, 376
BmiI	GGNNCC	2 cut(s)	42, 177
BmrFI	CCNGG	5 cut(s)	107, 233, 293, 371, 380
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	46
BpmI	CTGGAG	2 cut(s)	296, 422
Bpu10I	CCTNAGC	1 cut(s)	413
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse118I	RCCGGY	5 cut(s)	43, 119, 127, 155, 217
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	114
BseBI	CCWGG	4 cut(s)	107, 293, 371, 380
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	44, 204, 427
BseNI	ACTGG	1 cut(s)	41
BsePI	GCGCGC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	180
Bsh1236I	CGCG	2 cut(s)	125, 271
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	62, 110, 159, 182, 296, 359
BsiEI	CGRYCG	1 cut(s)	183
BsiSI	CCGG	9 cut(s)	18, 44, 115, 120, 128, 156, 179, 218, 232
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	6 cut(s)	62, 110, 159, 182, 296, 359
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	138, 312
Bsp1720I	GCTNAGC	1 cut(s)	213
BspACI	CCGC	9 cut(s)	74, 85, 173, 209, 221, 242, 271, 310, 374
BspANI	GGCC	6 cut(s)	62, 110, 159, 182, 296, 359
BspCNI	CTCAG	3 cut(s)	43, 205, 426
BspEI	TCCGGA	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	125, 271
BspLI	GGNNCC	2 cut(s)	42, 177
BspPI	GGATC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	241
BsrFI	RCCGGY	5 cut(s)	43, 119, 127, 155, 217
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	5 cut(s)	43, 119, 127, 155, 217
BssECI	CCNNGG	1 cut(s)	93
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	2 cut(s)	138, 312
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	4 cut(s)	107, 293, 371, 380
BstC8I	GCNNGC	5 cut(s)	89, 125, 157, 219, 255
BstDEI	CTNAG	4 cut(s)	30, 213, 327, 413
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	125, 271
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	4 cut(s)	125, 127, 226, 271
BstKTI	GATC	2 cut(s)	141, 315
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	2 cut(s)	138, 312
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 179, 218, 223, 302, 380, 426
BstNI	CCWGG	4 cut(s)	107, 293, 371, 380
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	5 cut(s)	105, 231, 291, 369, 378
BstUI	CGCG	2 cut(s)	125, 271
BstZI	CGGCCG	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	6 cut(s)	62, 110, 159, 182, 296, 359
BtsCI	GGATG	1 cut(s)	250
Cac8I	GCNNGC	5 cut(s)	89, 125, 157, 219, 255
CfoI	GCGC	4 cut(s)	125, 127, 226, 271
Cfr10I	RCCGGY	5 cut(s)	43, 119, 127, 155, 217
Cfr13I	GGNCC	5 cut(s)	109, 117, 130, 229, 376
CpoI	CGGWCCG	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	362
CspI	CGGWCCG	1 cut(s)	117
CviAII	CATG	1 cut(s)	254
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	4 cut(s)	30, 213, 327, 413
DpnI	GATC	2 cut(s)	140, 314
DpnII	GATC	2 cut(s)	138, 312
EaeI	YGGCCR	2 cut(s)	157, 180
EagI	CGGCCG	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	257
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	241
Eco47I	GGWCC	4 cut(s)	117, 130, 229, 376
Eco52I	CGGCCG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	4 cut(s)	105, 291, 369, 378
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	257
FaiI	YATR	3 cut(s)	162, 255, 345
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	5 cut(s)	74, 174, 210, 222, 272
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	5 cut(s)	74, 174, 210, 222, 272
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	4 cut(s)	124, 126, 225, 270
GluI	GCNGC	5 cut(s)	74, 174, 210, 222, 272
GsuI	CTGGAG	2 cut(s)	296, 422
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	6 cut(s)	62, 110, 159, 182, 296, 359
HapII	CCGG	9 cut(s)	18, 44, 115, 120, 128, 156, 179, 218, 232
HhaI	GCGC	4 cut(s)	125, 127, 226, 271
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	4 cut(s)	123, 125, 224, 269
HinP1I	GCGC	4 cut(s)	123, 125, 224, 269
HinfI	GANTC	3 cut(s)	12, 28, 259
HpaII	CCGG	9 cut(s)	18, 44, 115, 120, 128, 156, 179, 218, 232
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	151, 264
Hpy188III	TCNNGA	6 cut(s)	32, 115, 133, 142, 338, 401
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	3 cut(s)	163, 259, 349
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 179, 218, 223, 302, 380, 426
HpyF3I	CTNAG	4 cut(s)	30, 213, 327, 413
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	4 cut(s)	123, 125, 224, 269
Kpn2I	TCCGGA	1 cut(s)	114
KroI	GCCGGC	2 cut(s)	155, 217
KroNI	GCCGGC	2 cut(s)	157, 219
Kzo9I	GATC	2 cut(s)	138, 312
LmnI	GCTCC	3 cut(s)	20, 40, 181
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	302
MalI	GATC	2 cut(s)	140, 314
MboI	GATC	2 cut(s)	138, 312
MboII	GAAGA	4 cut(s)	205, 292, 295, 397
MhlI	GDGCHC	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	6 cut(s)	92, 122, 199, 243, 387, 397
MroI	TCCGGA	1 cut(s)	114
MroNI	GCCGGC	2 cut(s)	155, 217
MroXI	GAANNNNTTC	1 cut(s)	11
MspI	CCGG	9 cut(s)	18, 44, 115, 120, 128, 156, 179, 218, 232
MspR9I	CCNGG	5 cut(s)	107, 233, 293, 371, 380
MvaI	CCWGG	4 cut(s)	107, 293, 371, 380
MvnI	CGCG	2 cut(s)	125, 271
MwoI	GCNNNNNNNGC	7 cut(s)	73, 179, 218, 223, 302, 380, 426
NaeI	GCCGGC	2 cut(s)	157, 219
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	138, 312
NgoMIV	GCCGGC	2 cut(s)	155, 217
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	2 cut(s)	42, 177
NmeAIII	GCCGAG	1 cut(s)	218
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PalAI	GGCGCGCC	1 cut(s)	123
PauI	GCGCGC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PdiI	GCCGGC	2 cut(s)	157, 219
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	12, 259
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	75, 175, 211, 223, 273
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	4 cut(s)	105, 291, 369, 378
PspGI	CCWGG	4 cut(s)	105, 291, 369, 378
PspN4I	GGNNCC	2 cut(s)	42, 177
PspPI	GGNCC	5 cut(s)	109, 117, 130, 229, 376
PsyI	GACNNNGTC	1 cut(s)	233
PteI	GCGCGC	1 cut(s)	123
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
Rsr2I	CGGWCCG	1 cut(s)	117
RsrII	CGGWCCG	1 cut(s)	117
SatI	GCNGC	5 cut(s)	74, 174, 210, 222, 272
Sau3AI	GATC	2 cut(s)	138, 312
Sau96I	GGNCC	5 cut(s)	109, 117, 130, 229, 376
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	5 cut(s)	107, 233, 293, 371, 380
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	9 cut(s)	25, 84, 99, 201, 303, 324, 333, 408, 414
SfaNI	GCATC	1 cut(s)	142
SgsI	GGCGCGCC	1 cut(s)	123
SinI	GGWCC	4 cut(s)	117, 130, 229, 376
SphI	GCATGC	1 cut(s)	257
SsiI	CCGC	9 cut(s)	74, 85, 173, 209, 221, 242, 271, 310, 374
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	5 cut(s)	105, 231, 291, 369, 378
StyI	CCWWGG	1 cut(s)	93
TauI	GCSGC	5 cut(s)	76, 176, 212, 224, 274
TfiI	GAWTC	2 cut(s)	12, 259
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	4 cut(s)	117, 130, 229, 376
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.