Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Forward (+)

4363055 .. 4364181

Gene Structure 1127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCGAACCGATTCGCTGGAGCTCTGACTCAGGACTGGGAGCCGGTGGTGATCCACAGGCCAGCCAAAGCCGCAAGACCTCCGCAAGCCCAAGGTGGTGAACCAGGCCCTCCGACCGGCGCGCCGGTCCAGACGATCAAGAAGTCCGACGCCGGCCATAACAAGAAGGCGGCTCCGGTCGTGAGCGTGAAGAAGCTGGACGAGGCGGCCGAGCCGGCGGCGCTGGACCGGGTCTCGGCGGATGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCCGACCTAGCCAAGCGGATCAACGAGCTTCCTAAGGTGGTTCAGGAGTACGAGAACGGGAAGGCCGTGCCGAACCAGGCGGTGCTGGCGAAGATGGAGAGGGCTCTGGAGGTCAAGCTCAGGGGCAAAGTCGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

9.99

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 78	1.1e-07	Multiprotein bridging factor 1
HTH_3	PF01381	86 - 138	1.3e-11	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	122, 268
AciI	CCGC	9 cut(s)	72, 83, 170, 206, 218, 239, 268, 307, 371
AclWI	GGATC	2 cut(s)	46, 317
AcoI	YGGCCR	2 cut(s)	154, 207
AcyI	GRCGYC	1 cut(s)	150
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	116, 235
AjnI	CCWGG	3 cut(s)	103, 288, 366
AluBI	AGCT	4 cut(s)	23, 196, 319, 409
AluI	AGCT	4 cut(s)	23, 196, 319, 409
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	2 cut(s)	46, 317
AoxI	GGCC	6 cut(s)	59, 106, 154, 207, 291, 354
AscI	GGCGCGCC	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	4 cut(s)	122, 124, 223, 268
AspS9I	GGNCC	3 cut(s)	107, 127, 226
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	61, 110
AvaII	GGWCC	2 cut(s)	127, 226
AxyI	CCTNAGG	1 cut(s)	324
BanII	GRGCYC	2 cut(s)	25, 397
Bbv12I	GWGCWC	1 cut(s)	25
BccI	CCATC	1 cut(s)	379
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	3 cut(s)	105, 290, 368
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	299
BfoI	RGCGCY	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	215
BisI	GCNGC	5 cut(s)	72, 171, 207, 219, 269
BlsI	GCNGC	5 cut(s)	73, 172, 208, 220, 270
Bme1390I	CCNGG	4 cut(s)	105, 230, 290, 368
Bme18I	GGWCC	2 cut(s)	127, 226
BmgT120I	GGNCC	3 cut(s)	107, 127, 226
BmiI	GGNNCC	2 cut(s)	42, 174
BmrFI	CCNGG	4 cut(s)	105, 230, 290, 368
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpmI	CTGGAG	3 cut(s)	39, 293, 419
Bpu10I	CCTNAGC	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	91
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 235
Bse118I	RCCGGY	5 cut(s)	43, 116, 124, 152, 214
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	105, 290, 368
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	2 cut(s)	116, 235
BseMII	CTCAG	2 cut(s)	44, 424
BseNI	ACTGG	1 cut(s)	41
BsePI	GCGCGC	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	207
Bsh1236I	CGCG	2 cut(s)	122, 268
Bsh1285I	CGRYCG	3 cut(s)	117, 180, 210
BshFI	GGCC	6 cut(s)	61, 108, 156, 209, 293, 356
BsiEI	CGRYCG	3 cut(s)	117, 180, 210
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	7 cut(s)	44, 117, 125, 153, 176, 215, 229
BslI	CCNNNNNNNGG	2 cut(s)	116, 235
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	6 cut(s)	61, 108, 156, 209, 293, 356
Bso31I	GGTCTC	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	25, 397
Bsp143I	GATC	3 cut(s)	51, 135, 309
BspACI	CCGC	9 cut(s)	72, 83, 170, 206, 218, 239, 268, 307, 371
BspANI	GGCC	6 cut(s)	61, 108, 156, 209, 293, 356
BspCNI	CTCAG	2 cut(s)	43, 423
BspFNI	CGCG	2 cut(s)	122, 268
BspLI	GGNNCC	2 cut(s)	42, 174
BspPI	GGATC	2 cut(s)	46, 317
BspTNI	GGTCTC	1 cut(s)	238
BsrFI	RCCGGY	5 cut(s)	43, 116, 124, 152, 214
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	5 cut(s)	43, 116, 124, 152, 214
BssECI	CCNNGG	1 cut(s)	91
BssHII	GCGCGC	1 cut(s)	120
BssMI	GATC	3 cut(s)	51, 135, 309
BssNI	GRCGYC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	105, 290, 368
BstACI	GRCGYC	1 cut(s)	150
BstC8I	GCNNGC	7 cut(s)	63, 87, 122, 154, 216, 252, 378
BstDEI	CTNAG	3 cut(s)	30, 324, 410
BstF5I	GGATG	1 cut(s)	247
BstFNI	CGCG	2 cut(s)	122, 268
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	4 cut(s)	122, 124, 223, 268
BstKTI	GATC	3 cut(s)	54, 138, 312
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	51, 135, 309
BstMCI	CGRYCG	3 cut(s)	117, 180, 210
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 215, 220, 299, 377, 423
BstNI	CCWGG	3 cut(s)	105, 290, 368
BstNSI	RCATGY	1 cut(s)	254
BstSCI	CCNGG	4 cut(s)	103, 228, 288, 366
BstUI	CGCG	2 cut(s)	122, 268
BstZI	CGGCCG	1 cut(s)	207
Bsu36I	CCTNAGG	1 cut(s)	324
BsuRI	GGCC	6 cut(s)	61, 108, 156, 209, 293, 356
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	7 cut(s)	63, 87, 122, 154, 216, 252, 378
CfoI	GCGC	4 cut(s)	122, 124, 223, 268
Cfr10I	RCCGGY	5 cut(s)	43, 116, 124, 152, 214
Cfr13I	GGNCC	3 cut(s)	107, 127, 226
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	251
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	30, 324, 410
DpnI	GATC	3 cut(s)	53, 137, 311
DpnII	GATC	3 cut(s)	51, 135, 309
EaeI	YGGCCR	2 cut(s)	154, 207
EagI	CGGCCG	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	23
EclXI	CGGCCG	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	25, 397
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	127, 226
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	23
Eco81I	CCTNAGG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	103, 288, 366
EcoT14I	CCWWGG	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	25, 397
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	1 cut(s)	254
FaiI	YATR	2 cut(s)	159, 252
FatI	CATG	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	72, 171, 207, 219, 269
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	2 cut(s)	25, 397
Fsp4HI	GCNGC	5 cut(s)	72, 171, 207, 219, 269
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	4 cut(s)	121, 123, 222, 267
GluI	GCNGC	5 cut(s)	72, 171, 207, 219, 269
GsuI	CTGGAG	3 cut(s)	39, 293, 419
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	6 cut(s)	61, 108, 156, 209, 293, 356
HapII	CCGG	7 cut(s)	44, 117, 125, 153, 176, 215, 229
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	4 cut(s)	122, 124, 223, 268
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	4 cut(s)	120, 122, 221, 266
HinP1I	GCGC	4 cut(s)	120, 122, 221, 266
HinfI	GANTC	3 cut(s)	12, 28, 256
HpaII	CCGG	7 cut(s)	44, 117, 125, 153, 176, 215, 229
HphI	GGTGA	2 cut(s)	61, 110
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	27, 114, 148, 261
Hpy188III	TCNNGA	6 cut(s)	32, 130, 139, 181, 335, 398
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	160, 256, 346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 215, 220, 299, 377, 423
HpyF3I	CTNAG	3 cut(s)	30, 324, 410
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	4 cut(s)	120, 122, 221, 266
KroI	GCCGGC	2 cut(s)	152, 214
KroNI	GCCGGC	2 cut(s)	154, 216
Kzo9I	GATC	3 cut(s)	51, 135, 309
LmnI	GCTCC	3 cut(s)	20, 40, 178
MaeI	CTAG	1 cut(s)	299
MalI	GATC	3 cut(s)	53, 137, 311
MboI	GATC	3 cut(s)	51, 135, 309
MboII	GAAGA	4 cut(s)	202, 289, 292, 394
MhlI	GDGCHC	2 cut(s)	25, 397
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	2 cut(s)	137, 171
MnlI	CCTC	6 cut(s)	90, 120, 196, 240, 384, 394
MroNI	GCCGGC	2 cut(s)	152, 214
MroXI	GAANNNNTTC	1 cut(s)	11
MspI	CCGG	7 cut(s)	44, 117, 125, 153, 176, 215, 229
MspR9I	CCNGG	4 cut(s)	105, 230, 290, 368
MvaI	CCWGG	3 cut(s)	105, 290, 368
MvnI	CGCG	2 cut(s)	122, 268
MwoI	GCNNNNNNNGC	6 cut(s)	71, 215, 220, 299, 377, 423
NaeI	GCCGGC	2 cut(s)	154, 216
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	51, 135, 309
NgoMIV	GCCGGC	2 cut(s)	152, 214
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	2 cut(s)	42, 174
NmeAIII	GCCGAG	2 cut(s)	215, 235
NspI	RCATGY	1 cut(s)	254
PaeI	GCATGC	1 cut(s)	254
PalAI	GGCGCGCC	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 354
PdiI	GCCGGC	2 cut(s)	154, 216
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	12, 256
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	5 cut(s)	73, 172, 208, 220, 270
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	3 cut(s)	103, 288, 366
PspGI	CCWGG	3 cut(s)	103, 288, 366
PspN4I	GGNNCC	2 cut(s)	42, 174
PspPI	GGNCC	3 cut(s)	107, 127, 226
PsyI	GACNNNGTC	1 cut(s)	230
PteI	GCGCGC	1 cut(s)	120
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SacI	GAGCTC	1 cut(s)	25
SatI	GCNGC	5 cut(s)	72, 171, 207, 219, 269
Sau3AI	GATC	3 cut(s)	51, 135, 309
Sau96I	GGNCC	3 cut(s)	107, 127, 226
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	4 cut(s)	105, 230, 290, 368
SduI	GDGCHC	2 cut(s)	25, 397
SetI	ASST	9 cut(s)	25, 82, 97, 198, 300, 321, 330, 405, 411
SgsI	GGCGCGCC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	127, 226
SphI	GCATGC	1 cut(s)	254
SsiI	CCGC	9 cut(s)	72, 83, 170, 206, 218, 239, 268, 307, 371
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	4 cut(s)	103, 228, 288, 366
StyI	CCWWGG	1 cut(s)	91
TauI	GCSGC	5 cut(s)	74, 173, 209, 221, 271
TfiI	GAWTC	2 cut(s)	12, 256
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	127, 226
XceI	RCATGY	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.