Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2713722 .. 2716590

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g05110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCGAACCGATCCGCCGGAGCACTGACACAGGACTGGGAGCCGGTGGTGATCCACAAGTCCAAGCCGAAGCCACAAGACCTCCGCAAACCCAAGGTGGTGAACCAGGCCCTCCGGTCCGGCGCGCCGGTCCAGACGATCAAGAAGTCCGACGCCGGCCACAACAAGAAGGCGGCGCCGGTGGTGAGCGTGAAGAAGCTGGACGAGGCGGCCGAGCCGGCGGCGCTGGACCGAGTCTCGGCGGATGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGTCAGGCTGACCTGGCTAAGAGGATCAACGAGCTCCCTAAGGTGGTTCAGGAGTATGAGAACGGGAAGGCCGTGCCGAACCAGGCGGTGCTGGCGAAGATGGAAAGGGTTCTCGAGGTGAAGCTCAGGGGTAAAGTCGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

145

Amino Acids

15.81

Weight (kDa)

10.15

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	11 - 79	1.8e-19	Multiprotein bridging factor 1
HTH_3	PF01381	87 - 139	1.7e-11	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	2 cut(s)	125, 271
AciI	CCGC	8 cut(s)	15, 85, 173, 209, 221, 242, 271, 374
AclWI	GGATC	3 cut(s)	6, 46, 320
AcoI	YGGCCR	2 cut(s)	157, 210
AcyI	GRCGYC	2 cut(s)	153, 176
AfiI	CCNNNNNNNGG	2 cut(s)	238, 331
AjnI	CCWGG	3 cut(s)	105, 300, 369
AluBI	AGCT	3 cut(s)	199, 322, 412
AluI	AGCT	3 cut(s)	199, 322, 412
Alw21I	GWGCWC	2 cut(s)	25, 324
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	3 cut(s)	6, 46, 320
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	4 cut(s)	108, 157, 210, 357
AscI	GGCGCGCC	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	396
AspLEI	GCGC	5 cut(s)	125, 127, 178, 226, 271
AspS9I	GGNCC	4 cut(s)	109, 117, 130, 229
AsuHPI	GGTGA	4 cut(s)	61, 112, 196, 418
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	3 cut(s)	117, 130, 229
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	324
Bbv12I	GWGCWC	2 cut(s)	25, 324
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	3 cut(s)	107, 302, 371
BcoDI	GTCTC	1 cut(s)	241
BfoI	RGCGCY	2 cut(s)	179, 227
BglI	GCCNNNNNGGC	1 cut(s)	218
BisI	GCNGC	4 cut(s)	174, 210, 222, 272
BlsI	GCNGC	4 cut(s)	175, 211, 223, 273
Bme1390I	CCNGG	3 cut(s)	107, 302, 371
Bme18I	GGWCC	3 cut(s)	117, 130, 229
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	4 cut(s)	109, 117, 130, 229
BmiI	GGNNCC	2 cut(s)	42, 177
BmrFI	CCNGG	3 cut(s)	107, 302, 371
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
BpmI	CTGGAG	1 cut(s)	296
Bpu10I	CCTNAGC	1 cut(s)	413
BsaHI	GRCGYC	2 cut(s)	153, 176
BsaJI	CCNNGG	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 331
Bse118I	RCCGGY	5 cut(s)	43, 127, 155, 178, 217
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	3 cut(s)	107, 302, 371
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	238, 331
BseMII	CTCAG	1 cut(s)	427
BseNI	ACTGG	1 cut(s)	41
BsePI	GCGCGC	1 cut(s)	123
BseX3I	CGGCCG	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	125, 271
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	110, 159, 212, 359
BshNI	GGYRCC	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	25, 324
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	8 cut(s)	18, 44, 115, 120, 128, 156, 179, 218
BslI	CCNNNNNNNGG	2 cut(s)	238, 331
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	4 cut(s)	110, 159, 212, 359
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	25, 324
Bsp143I	GATC	4 cut(s)	11, 51, 138, 312
BspACI	CCGC	8 cut(s)	15, 85, 173, 209, 221, 242, 271, 374
BspANI	GGCC	4 cut(s)	110, 159, 212, 359
BspCNI	CTCAG	1 cut(s)	426
BspFNI	CGCG	2 cut(s)	125, 271
BspLI	GGNNCC	2 cut(s)	42, 177
BspPI	GGATC	3 cut(s)	6, 46, 320
BspT107I	GGYRCC	1 cut(s)	175
BsrFI	RCCGGY	5 cut(s)	43, 127, 155, 178, 217
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	5 cut(s)	43, 127, 155, 178, 217
BssECI	CCNNGG	1 cut(s)	93
BssHII	GCGCGC	1 cut(s)	123
BssMI	GATC	4 cut(s)	11, 51, 138, 312
BssNI	GRCGYC	2 cut(s)	153, 176
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	3 cut(s)	107, 302, 371
BstACI	GRCGYC	2 cut(s)	153, 176
BstC8I	GCNNGC	5 cut(s)	125, 157, 219, 255, 381
BstDEI	CTNAG	3 cut(s)	306, 327, 413
BstF5I	GGATG	1 cut(s)	250
BstFNI	CGCG	2 cut(s)	125, 271
BstH2I	RGCGCY	2 cut(s)	179, 227
BstHHI	GCGC	5 cut(s)	125, 127, 178, 226, 271
BstKTI	GATC	4 cut(s)	14, 54, 141, 315
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	4 cut(s)	11, 51, 138, 312
BstMCI	CGRYCG	1 cut(s)	213
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 223, 302, 380
BstNI	CCWGG	3 cut(s)	107, 302, 371
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	105, 300, 369
BstUI	CGCG	2 cut(s)	125, 271
BstZI	CGGCCG	1 cut(s)	210
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	4 cut(s)	110, 159, 212, 359
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	5 cut(s)	125, 157, 219, 255, 381
CfoI	GCGC	5 cut(s)	125, 127, 178, 226, 271
Cfr10I	RCCGGY	5 cut(s)	43, 127, 155, 178, 217
Cfr13I	GGNCC	4 cut(s)	109, 117, 130, 229
CpoI	CGGWCCG	1 cut(s)	117
CseI	GACGC	1 cut(s)	161
CspI	CGGWCCG	1 cut(s)	117
CviAII	CATG	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	306, 327, 413
DinI	GGCGCC	1 cut(s)	177
DpnI	GATC	4 cut(s)	13, 53, 140, 314
DpnII	GATC	4 cut(s)	11, 51, 138, 312
EaeI	YGGCCR	2 cut(s)	157, 210
EagI	CGGCCG	1 cut(s)	210
EciI	GGCGGA	2 cut(s)	4, 257
Ecl136II	GAGCTC	1 cut(s)	322
EclXI	CGGCCG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	93
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	117, 130, 229
Eco52I	CGGCCG	1 cut(s)	210
Eco53kI	GAGCTC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	109
EcoRII	CCWGG	3 cut(s)	105, 300, 369
EcoT14I	CCWWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	324
EgeI	GGCGCC	1 cut(s)	177
EheI	GGCGCC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	1 cut(s)	257
FaiI	YATR	2 cut(s)	255, 345
FatI	CATG	1 cut(s)	253
Fnu4HI	GCNGC	4 cut(s)	174, 210, 222, 272
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	174, 210, 222, 272
GlaI	GCGC	5 cut(s)	124, 126, 177, 225, 270
GluI	GCNGC	4 cut(s)	174, 210, 222, 272
GsuI	CTGGAG	1 cut(s)	296
HaeII	RGCGCY	2 cut(s)	179, 227
HaeIII	GGCC	4 cut(s)	110, 159, 212, 359
HapII	CCGG	8 cut(s)	18, 44, 115, 120, 128, 156, 179, 218
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	5 cut(s)	125, 127, 178, 226, 271
Hin1I	GRCGYC	2 cut(s)	153, 176
Hin1II	CATG	1 cut(s)	257
Hin6I	GCGC	5 cut(s)	123, 125, 176, 224, 269
HinP1I	GCGC	5 cut(s)	123, 125, 176, 224, 269
HinfI	GANTC	3 cut(s)	234, 259, 289
HpaII	CCGG	8 cut(s)	18, 44, 115, 120, 128, 156, 179, 218
HphI	GGTGA	4 cut(s)	61, 112, 196, 418
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	151, 264
Hpy188III	TCNNGA	4 cut(s)	133, 142, 338, 401
Hpy8I	GTNNAC	1 cut(s)	103
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	163, 259, 349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 223, 302, 380
HpyF3I	CTNAG	3 cut(s)	306, 327, 413
Hsp92I	GRCGYC	2 cut(s)	153, 176
Hsp92II	CATG	1 cut(s)	257
HspAI	GCGC	5 cut(s)	123, 125, 176, 224, 269
KasI	GGCGCC	1 cut(s)	175
KroI	GCCGGC	2 cut(s)	155, 217
KroNI	GCCGGC	2 cut(s)	157, 219
Kzo9I	GATC	4 cut(s)	11, 51, 138, 312
LmnI	GCTCC	3 cut(s)	20, 40, 327
MalI	GATC	4 cut(s)	13, 53, 140, 314
MboI	GATC	4 cut(s)	11, 51, 138, 312
MboII	GAAGA	4 cut(s)	205, 292, 295, 397
MhlI	GDGCHC	2 cut(s)	25, 324
Mly113I	GGCGCC	1 cut(s)	176
MlyI	GAGTC	2 cut(s)	243, 298
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	6 cut(s)	92, 122, 199, 243, 303, 397
MroNI	GCCGGC	2 cut(s)	155, 217
MroXI	GAANNNNTTC	1 cut(s)	396
MspI	CCGG	8 cut(s)	18, 44, 115, 120, 128, 156, 179, 218
MspR9I	CCNGG	3 cut(s)	107, 302, 371
MvaI	CCWGG	3 cut(s)	107, 302, 371
MvnI	CGCG	2 cut(s)	125, 271
MwoI	GCNNNNNNNGC	4 cut(s)	218, 223, 302, 380
NaeI	GCCGGC	2 cut(s)	157, 219
NarI	GGCGCC	1 cut(s)	176
NdeII	GATC	4 cut(s)	11, 51, 138, 312
NgoMIV	GCCGGC	2 cut(s)	155, 217
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	2 cut(s)	42, 177
NmeAIII	GCCGAG	2 cut(s)	218, 238
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	401
PalAI	GGCGCGCC	1 cut(s)	123
PauI	GCGCGC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 357
PdiI	GCCGGC	2 cut(s)	157, 219
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	259
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	175, 211, 223, 273
PleI	GAGTC	2 cut(s)	242, 297
PluTI	GGCGCC	1 cut(s)	179
PpsI	GAGTC	2 cut(s)	242, 297
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	3 cut(s)	105, 300, 369
PspGI	CCWGG	3 cut(s)	105, 300, 369
PspN4I	GGNNCC	2 cut(s)	42, 177
PspPI	GGNCC	4 cut(s)	109, 117, 130, 229
PsyI	GACNNNGTC	1 cut(s)	233
PteI	GCGCGC	1 cut(s)	123
Rsr2I	CGGWCCG	1 cut(s)	117
RsrII	CGGWCCG	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	4 cut(s)	174, 210, 222, 272
Sau3AI	GATC	4 cut(s)	11, 51, 138, 312
Sau96I	GGNCC	4 cut(s)	109, 117, 130, 229
SchI	GAGTC	2 cut(s)	243, 298
ScrFI	CCNGG	3 cut(s)	107, 302, 371
SduI	GDGCHC	2 cut(s)	25, 324
SetI	ASST	8 cut(s)	84, 99, 201, 303, 324, 333, 408, 414
SfoI	GGCGCC	1 cut(s)	177
Sfr274I	CTCGAG	1 cut(s)	401
SgrAI	CRCCGGYG	1 cut(s)	178
SgsI	GGCGCGCC	1 cut(s)	123
SinI	GGWCC	3 cut(s)	117, 130, 229
SlaI	CTCGAG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SphI	GCATGC	1 cut(s)	257
SsiI	CCGC	8 cut(s)	15, 85, 173, 209, 221, 242, 271, 374
SspDI	GGCGCC	1 cut(s)	175
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	3 cut(s)	105, 300, 369
StyI	CCWWGG	1 cut(s)	93
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	246
TauI	GCSGC	4 cut(s)	176, 212, 224, 274
TfiI	GAWTC	1 cut(s)	259
TscAI	CASTG	1 cut(s)	30
TspRI	CASTG	1 cut(s)	30
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	3 cut(s)	117, 130, 229
XceI	RCATGY	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.