Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012996

Physical Location & Seq

Genomic Coordinates Reverse (-)

2740312 .. 2740989

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g04180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAAAACCGGATTCTCGCCCCACTACAAATTGCGCACCAAACTTCATCGTCCCCGATCATCTTCTCCTCCAAACCCACAAGCAAAAATCCAGAAAATTCTCTCTCTAAAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGATATCTCTAGATTTCCGACGATGCCGAGCCGAAACCCAGGAGTCATAGCGCAGGACTGGGAGCCGGTGGTCCTCCAGAAGAAGCCCAATAAGGCCAGCGCCCTCCGCGACCCGAAGGCGGTGAACCAGGCGATGCGGTCGGGCGCGCCGGTCCAGACCATCAAGAAATTCGACGGGGGCTCGAACAAGAAGGCGGCGCCGGTGGTCAGCGTGAAGAAGCTCGAGGAGGCGGCCGAGCCGGCGGCGCTGGAGCGGGTCTCGATGGAGGTGCGACAGGCGATACAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAGGCGGAGCTGGCGAAGCGGATCAACGAGCGGCCTCAGGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTGCCGAACCAGGCGGTGCTGGTGAAGATGGAGAGGGTTCTGGGAGTTAAGCTCCGGGGCAAAGTTGGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0003674 GO:0003700 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009408 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009755 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032870 GO:0033993 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HTH_3 MBF1

Protein Analysis

204

Amino Acids

22.17

Weight (kDa)

10.36

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MBF1	PF08523	70 - 138	8.1e-20	Multiprotein bridging factor 1
HTH_3	PF01381	146 - 198	4.8e-15	Helix-turn-helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24500 AT3G24500
fragaria_vesca	FvH4_1g05110
malus_domestica	MD02G1050200.v1.1 MD15G1187400.v1.1
prunus_persica	Prupe.7G229000_v2.0.a1
pyrus_communis	pycom02g04180
rosa_chinensis	RchiOBHm_Chr2g0090751
rosa_laevigata	RLG00000016140
rosa_multiflora	Rmu_sc0009405.1_g000002 Rmu_ssc0000367.1_g000006
rosa_roxburghii	Rroxscaffold_2G00150850
rosa_rugosa	Rorug02G0010200
rosa_samantha	Rh2AG056200 Rh2BG054500 Rh2CG057200 Rh2DG055800
rosa_wichuraiana	Rw2G004630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	36
AccB1I	GGYRCC	2 cut(s)	352, 538
AccBSI	CCGCTC	2 cut(s)	409, 499
AccII	CGCG	3 cut(s)	264, 302, 448
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	97, 323
AcyI	GRCGYC	1 cut(s)	353
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	1 cut(s)	274
AjnI	CCWGG	4 cut(s)	193, 282, 468, 546
AluBI	AGCT	3 cut(s)	376, 478, 589
AluI	AGCT	3 cut(s)	376, 478, 589
Alw26I	GTCTC	2 cut(s)	118, 418
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	3 cut(s)	249, 387, 500
ApoI	RAATTY	2 cut(s)	97, 323
AscI	GGCGCGCC	1 cut(s)	300
AspLEI	GCGC	8 cut(s)	37, 208, 257, 302, 304, 355, 403, 448
AspS9I	GGNCC	2 cut(s)	226, 307
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	2 cut(s)	289, 571
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	226, 307
AxyI	CCTNAGG	1 cut(s)	504
BanI	GGYRCC	2 cut(s)	352, 538
BanII	GRGCYC	1 cut(s)	338
BccI	CCATC	3 cut(s)	323, 412, 559
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BciT130I	CCWGG	4 cut(s)	195, 284, 470, 548
BcnI	CCSGG	1 cut(s)	593
BcoDI	GTCTC	2 cut(s)	118, 418
BfaI	CTAG	2 cut(s)	155, 165
BfoI	RGCGCY	3 cut(s)	258, 356, 404
BglI	GCCNNNNNGGC	1 cut(s)	395
BisI	GCNGC	5 cut(s)	351, 387, 399, 449, 500
BlsI	GCNGC	5 cut(s)	352, 388, 400, 450, 501
Bme1390I	CCNGG	5 cut(s)	195, 284, 470, 548, 593
Bme18I	GGWCC	2 cut(s)	226, 307
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	226, 307
BmiI	GGNNCC	3 cut(s)	219, 354, 540
BmrFI	CCNGG	5 cut(s)	195, 284, 470, 548, 593
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	168, 279
BmuI	ACTGGG	1 cut(s)	223
BplI	GAGNNNNNCTC	4 cut(s)	398, 430, 573, 605
BpmI	CTGGAG	3 cut(s)	215, 425, 473
BpuMI	CCSGG	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	193, 592
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	4 cut(s)	220, 304, 355, 394
Bse1I	ACTGG	1 cut(s)	218
Bse21I	CCTNAGG	1 cut(s)	504
BseBI	CCWGG	4 cut(s)	195, 284, 470, 548
BseDI	CCNNGG	2 cut(s)	193, 592
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	1 cut(s)	218
BsePI	GCGCGC	1 cut(s)	300
BseRI	GAGGAG	2 cut(s)	58, 395
BseX3I	CGGCCG	1 cut(s)	387
BsgI	GTGCAG	1 cut(s)	533
Bsh1236I	CGCG	3 cut(s)	264, 302, 448
Bsh1285I	CGRYCG	2 cut(s)	296, 390
BshFI	GGCC	3 cut(s)	251, 389, 502
BshNI	GGYRCC	2 cut(s)	352, 538
BsiEI	CGRYCG	2 cut(s)	296, 390
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	6 cut(s)	10, 221, 305, 356, 395, 592
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	118, 418
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	3 cut(s)	251, 389, 502
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	57, 489
BspANI	GGCC	3 cut(s)	251, 389, 502
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	3 cut(s)	264, 302, 448
BspLI	GGNNCC	3 cut(s)	219, 354, 540
BspPI	GGATC	1 cut(s)	497
BspT107I	GGYRCC	2 cut(s)	352, 538
BspTNI	GGTCTC	1 cut(s)	418
BsrBI	CCGCTC	2 cut(s)	409, 499
BsrFI	RCCGGY	4 cut(s)	220, 304, 355, 394
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	4 cut(s)	220, 304, 355, 394
BssECI	CCNNGG	2 cut(s)	193, 592
BssHII	GCGCGC	1 cut(s)	300
BssMI	GATC	2 cut(s)	57, 489
BssNI	GRCGYC	1 cut(s)	353
Bst2UI	CCWGG	4 cut(s)	195, 284, 470, 548
BstACI	GRCGYC	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	253, 302, 396, 480
BstDEI	CTNAG	1 cut(s)	504
BstFNI	CGCG	3 cut(s)	264, 302, 448
BstH2I	RGCGCY	3 cut(s)	258, 356, 404
BstHHI	GCGC	8 cut(s)	37, 208, 257, 302, 304, 355, 403, 448
BstKTI	GATC	2 cut(s)	60, 492
BstMAI	GTCTC	2 cut(s)	118, 418
BstMBI	GATC	2 cut(s)	57, 489
BstMCI	CGRYCG	2 cut(s)	296, 390
BstMWI	GCNNNNNNNGC	5 cut(s)	261, 395, 400, 479, 484
BstNI	CCWGG	4 cut(s)	195, 284, 470, 548
BstSCI	CCNGG	5 cut(s)	193, 282, 468, 546, 591
BstUI	CGCG	3 cut(s)	264, 302, 448
BstZI	CGGCCG	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	504
BsuRI	GGCC	3 cut(s)	251, 389, 502
BtgZI	GCGATG	1 cut(s)	302
Cac8I	GCNNGC	4 cut(s)	253, 302, 396, 480
CfoI	GCGC	8 cut(s)	37, 208, 257, 302, 304, 355, 403, 448
Cfr10I	RCCGGY	4 cut(s)	220, 304, 355, 394
Cfr13I	GGNCC	2 cut(s)	226, 307
Csp6I	GTAC	1 cut(s)	520
CviQI	GTAC	1 cut(s)	520
DdeI	CTNAG	1 cut(s)	504
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	2 cut(s)	59, 491
DpnII	GATC	2 cut(s)	57, 489
EaeI	YGGCCR	1 cut(s)	387
EagI	CGGCCG	1 cut(s)	387
EciI	GGCGGA	1 cut(s)	488
EclXI	CGGCCG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	418
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	2 cut(s)	226, 307
Eco52I	CGGCCG	1 cut(s)	387
Eco81I	CCTNAGG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	377
EcoRII	CCWGG	4 cut(s)	193, 282, 468, 546
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
FaiI	YATR	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	37
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	5 cut(s)	351, 387, 399, 449, 500
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	5 cut(s)	351, 387, 399, 449, 500
FspBI	CTAG	2 cut(s)	155, 165
FspI	TGCGCA	1 cut(s)	36
GlaI	GCGC	8 cut(s)	36, 207, 256, 301, 303, 354, 402, 447
GluI	GCNGC	5 cut(s)	351, 387, 399, 449, 500
GsuI	CTGGAG	3 cut(s)	215, 425, 473
HaeII	RGCGCY	3 cut(s)	258, 356, 404
HaeIII	GGCC	3 cut(s)	251, 389, 502
HapII	CCGG	6 cut(s)	10, 221, 305, 356, 395, 592
HhaI	GCGC	8 cut(s)	37, 208, 257, 302, 304, 355, 403, 448
Hin1I	GRCGYC	1 cut(s)	353
Hin6I	GCGC	8 cut(s)	35, 206, 255, 300, 302, 353, 401, 446
HinP1I	GCGC	8 cut(s)	35, 206, 255, 300, 302, 353, 401, 446
HinfI	GANTC	2 cut(s)	13, 198
HpaII	CCGG	6 cut(s)	10, 221, 305, 356, 395, 592
HphI	GGTGA	2 cut(s)	289, 571
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	7 cut(s)	92, 155, 165, 232, 310, 319, 415
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	2 cut(s)	178, 332
HpyAV	CCTTC	4 cut(s)	265, 340, 436, 526
HpyCH4V	TGCA	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	5 cut(s)	261, 395, 400, 479, 484
HpyF3I	CTNAG	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	353
HspAI	GCGC	8 cut(s)	35, 206, 255, 300, 302, 353, 401, 446
KasI	GGCGCC	1 cut(s)	352
KroI	GCCGGC	1 cut(s)	394
KroNI	GCCGGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	57, 489
LmnI	GCTCC	4 cut(s)	217, 406, 475, 594
LweI	GCATC	2 cut(s)	168, 279
MaeI	CTAG	2 cut(s)	155, 165
MalI	GATC	2 cut(s)	59, 491
MbiI	CCGCTC	2 cut(s)	409, 499
MboI	GATC	2 cut(s)	57, 489
MboII	GAAGA	6 cut(s)	55, 247, 382, 469, 472, 574
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	3 cut(s)	30, 97, 323
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	8 cut(s)	79, 239, 269, 373, 376, 415, 513, 564
MroNI	GCCGGC	1 cut(s)	394
MseI	TTAA	1 cut(s)	585
MspI	CCGG	6 cut(s)	10, 221, 305, 356, 395, 592
MspR9I	CCNGG	5 cut(s)	195, 284, 470, 548, 593
MvaI	CCWGG	4 cut(s)	195, 284, 470, 548
MvnI	CGCG	3 cut(s)	264, 302, 448
MwoI	GCNNNNNNNGC	5 cut(s)	261, 395, 400, 479, 484
NaeI	GCCGGC	1 cut(s)	396
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	593
NdeII	GATC	2 cut(s)	57, 489
NgoMIV	GCCGGC	1 cut(s)	394
NlaIV	GGNNCC	3 cut(s)	219, 354, 540
NmeAIII	GCCGAG	2 cut(s)	207, 415
NsbI	TGCGCA	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	377
PalAI	GGCGCGCC	1 cut(s)	300
PauI	GCGCGC	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	5 cut(s)	352, 388, 400, 450, 501
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	4 cut(s)	193, 282, 468, 546
PspGI	CCWGG	4 cut(s)	193, 282, 468, 546
PspN4I	GGNNCC	3 cut(s)	219, 354, 540
PspPI	GGNCC	2 cut(s)	226, 307
PspXI	VCTCGAGB	1 cut(s)	377
PteI	GCGCGC	1 cut(s)	300
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	5 cut(s)	351, 387, 399, 449, 500
Sau3AI	GATC	2 cut(s)	57, 489
Sau96I	GGNCC	2 cut(s)	226, 307
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	5 cut(s)	195, 284, 470, 548, 593
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	5 cut(s)	378, 426, 480, 510, 591
SfaNI	GCATC	2 cut(s)	168, 279
SfoI	GGCGCC	1 cut(s)	354
Sfr274I	CTCGAG	1 cut(s)	377
SgrAI	CRCCGGYG	1 cut(s)	355
SgsI	GGCGCGCC	1 cut(s)	300
SinI	GGWCC	2 cut(s)	226, 307
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	30, 97, 323
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	155, 165
StyD4I	CCNGG	5 cut(s)	193, 282, 468, 546, 591
TaqI	TCGA	4 cut(s)	327, 338, 378, 416
TasI	AATT	3 cut(s)	30, 97, 323
TauI	GCSGC	5 cut(s)	353, 389, 401, 451, 502
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TspDTI	ATGAA	2 cut(s)	17, 36
VpaK11BI	GGWCC	2 cut(s)	226, 307
XapI	RAATTY	2 cut(s)	97, 323
XbaI	TCTAGA	2 cut(s)	154, 164
XhoI	CTCGAG	1 cut(s)	377
XspI	CTAG	2 cut(s)	155, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.