AT3G25805

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0016110
Physical Location & Seq
Reverse (-)
9426238 .. 9428277
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25805.1

Sequence Viewer

Length: 1008 bp
ATGATTCTGATAACCTCACCGACGTTGACATATCTCCGTCACCGTCTCCACAGTTCCCAAATCAAATCGCCACAAATTCGCCGCCATTTTCTTCGGAGTAGAGAAATCTCCACAGTCGATCGCTGCTACAATCCATGGCAGTCTACGAATCGTTTCAAATTACGAACACGAGACAGTTCCTTCTTATGCTGTGCTCGCCGGAAACCGGAGACGGCGACGGTAGAGGTTGAAGATGATTCTATAAGGAGAATTGTTCGGTATCTTCTATGGACTAGTGAAGCTGTGTATATACTATGGCTCTTTCTTCTCCCTTACGCTCCTGGAGATCCAGTTTGGGCAATTAGTTCAGAGACAGTGAATTCTCTTTTGGGACTTTCTCTGAATTTCTTCTTTGTCTTGCCTCTTACAAACGCCGCTGGTATTCACTTCTTACAAGCTCCTGTTCTTCACCCGATGGCTGAAGGGTTATTCAACTTTGTAATAGCTTGGACACTCATGTTTGCTCCATTGCTATACACAGACCGAAAGAGAAATCGATACAAAAGCTCTCTTGACGTCTTATGGAGTCTCATGATGTTCCTTACAAACACGTTTCTAATCCCATACATGGCTTTACGGCTCAATGACGCTGACCCAGATGATAAACCAAGCAAAAGGTCTCAACTTGGTGAAGTGATGACCAAAGGTGCACCAATAGTTGGTCTGACCGGAGCTACGGTGTGTCTGATATCAGCATTGTGGTCTCTCTACGGTCGAGCAGATGGTGATTTCGGTGGAATCATGGACAGATGGCAGTATCTGATTGGTTATTTGGGATCGGAGAGACTAGCTTACGCGTTTATATGGGATATATGTCTGTACACAATCTTTCAGCCATGGTTGATTGGAGAGAACCTGCAAAATGTGAAGAAGAACAAGATTGAATTGGTGAAGTATCTAAGGTTTGTTCCTGTTTTTGGTTTACTTGCATATCATTTGTTTCTCAATCTCGAAGATGAATCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

38.75

Weight (kDa)

9.12

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 558
Acc36I ACCTGC 1 cut(s) 903
AccB7I CCANNNNNTGG 1 cut(s) 698
AccI GTMKAC 1 cut(s) 143
AccII CGCG 1 cut(s) 836
AciI CCGC 2 cut(s) 82, 414
AclWI GGATC 2 cut(s) 320, 823
AcsI RAATTY 3 cut(s) 75, 358, 382
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 1 cut(s) 555
AfaI GTAC 1 cut(s) 860
AfiI CCNNNNNNNGG 4 cut(s) 205, 607, 698, 956
AflIII ACRYGT 2 cut(s) 588, 834
AgsI TTSAA 4 cut(s) 157, 230, 472, 923
AhlI ACTAGT 1 cut(s) 272
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 2 cut(s) 350, 382
AluBI AGCT 6 cut(s) 281, 437, 485, 546, 713, 830
AluI AGCT 6 cut(s) 281, 437, 485, 546, 713, 830
Alw21I GWGCWC 2 cut(s) 196, 691
Alw26I GTCTC 8 cut(s) 50, 165, 203, 344, 572, 663, 747, 817
Alw44I GTGCAC 1 cut(s) 687
AlwI GGATC 2 cut(s) 320, 823
AlwNI CAGNNNCTG 1 cut(s) 799
ApaLI GTGCAC 1 cut(s) 687
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 3 cut(s) 75, 358, 382
Asp700I GAANNNNTTC 2 cut(s) 152, 386
AsuHPI GGTGA 6 cut(s) 9, 32, 440, 680, 776, 940
BaeGI GKGCMC 1 cut(s) 691
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 2 cut(s) 196, 691
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 448, 755, 783
BceAI ACGGC 2 cut(s) 228, 632
BciT130I CCWGG 1 cut(s) 321
BcoDI GTCTC 8 cut(s) 50, 165, 203, 344, 572, 663, 747, 817
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 2 cut(s) 273, 827
BfuAI ACCTGC 1 cut(s) 903
BisI GCNGC 3 cut(s) 82, 124, 414
BlsI GCNGC 3 cut(s) 83, 125, 415
Bme1390I CCNGG 1 cut(s) 321
BmrFI CCNGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 342
Bsa29I ATCGAT 1 cut(s) 535
BsaHI GRCGYC 1 cut(s) 555
BsaI GGTCTC 2 cut(s) 663, 747
BsaJI CCNNGG 2 cut(s) 134, 875
BsaWI WCCGGW 2 cut(s) 205, 707
BsaXI ACNNNNNCTCC 4 cut(s) 315, 345, 702, 732
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 607, 698, 956
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 134, 875
BseLI CCNNNNNNNGG 4 cut(s) 205, 607, 698, 956
BseMI GCAATG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 691
BseXI GCAGC 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 836
Bsh1285I CGRYCG 2 cut(s) 121, 754
BshVI ATCGAT 1 cut(s) 535
BsiEI CGRYCG 2 cut(s) 121, 754
BsiHKAI GWGCWC 2 cut(s) 196, 691
BsiSI CCGG 3 cut(s) 199, 206, 708
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 4 cut(s) 205, 607, 698, 956
BsmAI GTCTC 8 cut(s) 50, 165, 203, 344, 572, 663, 747, 817
BsmBI CGTCTC 2 cut(s) 50, 203
BsmFI GGGAC 1 cut(s) 384
Bso31I GGTCTC 2 cut(s) 663, 747
Bsp1286I GDGCHC 2 cut(s) 196, 691
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 3 cut(s) 118, 325, 815
Bsp19I CCATGG 2 cut(s) 134, 875
BspACI CCGC 2 cut(s) 82, 414
BspDI ATCGAT 1 cut(s) 535
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 903
BspPI GGATC 2 cut(s) 320, 823
BspTNI GGTCTC 2 cut(s) 663, 747
BsrDI GCAATG 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 134, 875
BssMI GATC 3 cut(s) 118, 325, 815
BssNI GRCGYC 1 cut(s) 555
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 134, 875
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 8 cut(s) 44, 53, 115, 176, 220, 355, 718, 752
BstACI GRCGYC 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 858
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 938
BstDSI CCRYGG 2 cut(s) 134, 875
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 3 cut(s) 121, 328, 818
BstMAI GTCTC 8 cut(s) 50, 165, 203, 344, 572, 663, 747, 817
BstMBI GATC 3 cut(s) 118, 325, 815
BstMCI CGRYCG 2 cut(s) 121, 754
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 691
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 325
BstYI RGATCY 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 535
BtgI CCRYGG 2 cut(s) 134, 875
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 903
Cac8I GCNNGC 1 cut(s) 196
CaiI CAGNNNCTG 1 cut(s) 799
CciI TCATGA 1 cut(s) 570
ClaI ATCGAT 1 cut(s) 535
CseI GACGC 1 cut(s) 635
Csp6I GTAC 1 cut(s) 859
CviAII CATG 6 cut(s) 135, 496, 571, 607, 781, 876
CviQI GTAC 1 cut(s) 859
DdeI CTNAG 1 cut(s) 938
DpnI GATC 3 cut(s) 120, 327, 817
DpnII GATC 3 cut(s) 118, 325, 815
Eco130I CCWWGG 2 cut(s) 134, 875
Eco31I GGTCTC 2 cut(s) 663, 747
Eco32I GATATC 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 480
EcoRI GAATTC 1 cut(s) 358
EcoRII CCWGG 1 cut(s) 319
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 2 cut(s) 134, 875
ErhI CCWWGG 2 cut(s) 134, 875
Esp3I CGTCTC 2 cut(s) 50, 203
FaeI CATG 6 cut(s) 138, 499, 574, 610, 784, 879
FaqI GGGAC 1 cut(s) 384
FatI CATG 6 cut(s) 134, 495, 570, 606, 780, 875
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 3 cut(s) 82, 124, 414
Fsp4HI GCNGC 3 cut(s) 82, 124, 414
FspBI CTAG 2 cut(s) 273, 827
GluI GCNGC 3 cut(s) 82, 124, 414
GsuI CTGGAG 1 cut(s) 342
HapII CCGG 3 cut(s) 199, 206, 708
HgaI GACGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 555
Hin1II CATG 6 cut(s) 138, 499, 574, 610, 784, 879
HincII GTYRAC 1 cut(s) 27
HindII GTYRAC 1 cut(s) 27
HinfI GANTC 6 cut(s) 4, 148, 236, 565, 777, 998
HpaII CCGG 3 cut(s) 199, 206, 708
HphI GGTGA 6 cut(s) 9, 32, 440, 680, 776, 940
Hpy166II GTNNAC 5 cut(s) 27, 144, 689, 861, 962
Hpy188I TCNGA 8 cut(s) 9, 96, 349, 381, 705, 726, 801, 820
Hpy188III TCNNGA 3 cut(s) 551, 571, 989
Hpy8I GTNNAC 5 cut(s) 27, 144, 689, 861, 962
Hpy99I CGWCG 2 cut(s) 25, 220
HpyAV CCTTC 2 cut(s) 190, 455
HpyCH4III ACNGT 8 cut(s) 44, 53, 115, 176, 220, 355, 718, 752
HpyCH4IV ACGT 3 cut(s) 23, 555, 590
HpyCH4V TGCA 3 cut(s) 689, 898, 968
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 938
HpySE526I ACGT 3 cut(s) 23, 555, 590
Hsp92I GRCGYC 1 cut(s) 555
Hsp92II CATG 6 cut(s) 138, 499, 574, 610, 784, 879
Kzo9I GATC 3 cut(s) 118, 325, 815
LmnI GCTCC 4 cut(s) 322, 442, 508, 710
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 2 cut(s) 273, 827
MaeII ACGT 3 cut(s) 23, 555, 590
MaeIII GTNAC 1 cut(s) 38
MalI GATC 3 cut(s) 120, 327, 817
MboI GATC 3 cut(s) 118, 325, 815
MboII GAAGA 9 cut(s) 83, 242, 254, 296, 379, 437, 919, 922, 1004
MflI RGATCY 1 cut(s) 325
MhlI GDGCHC 2 cut(s) 196, 691
MluCI AATT 8 cut(s) 75, 158, 249, 339, 358, 382, 923, 1002
MluI ACGCGT 1 cut(s) 834
MlyI GAGTC 1 cut(s) 574
MnlI CCTC 3 cut(s) 25, 217, 411
MroXI GAANNNNTTC 2 cut(s) 152, 386
MseI TTAA 1 cut(s) 1006
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 3 cut(s) 199, 206, 708
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 1 cut(s) 195
NcoI CCATGG 2 cut(s) 134, 875
NdeII GATC 3 cut(s) 118, 325, 815
NlaIII CATG 6 cut(s) 138, 499, 574, 610, 784, 879
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 570
PdmI GAANNNNTTC 2 cut(s) 152, 386
PfeI GAWTC 5 cut(s) 4, 148, 236, 777, 998
PflMI CCANNNNNTGG 1 cut(s) 698
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 3 cut(s) 83, 125, 415
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PstNI CAGNNNCTG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 325
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 1 cut(s) 860
RsaNI GTAC 1 cut(s) 859
SaqAI TTAA 1 cut(s) 1006
SatI GCNGC 3 cut(s) 82, 124, 414
Sau3AI GATC 3 cut(s) 118, 325, 815
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 2 cut(s) 196, 691
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 8 cut(s) 75, 158, 249, 339, 358, 382, 923, 1002
SsiI CCGC 2 cut(s) 82, 414
SspMI CTAG 2 cut(s) 273, 827
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 2 cut(s) 134, 875
TaaI ACNGT 8 cut(s) 44, 53, 115, 176, 220, 355, 718, 752
TaiI ACGT 3 cut(s) 26, 558, 593
TaqI TCGA 4 cut(s) 117, 535, 754, 990
TaqII GACCGA 1 cut(s) 537
TasI AATT 8 cut(s) 75, 158, 249, 339, 358, 382, 923, 1002
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 84, 416
TfiI GAWTC 5 cut(s) 4, 148, 236, 777, 998
Tru1I TTAA 1 cut(s) 1006
Tru9I TTAA 1 cut(s) 1006
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 38
TspGWI ACGGA 1 cut(s) 26
TspRI CASTG 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 698
VneI GTGCAC 1 cut(s) 687
XapI RAATTY 3 cut(s) 75, 358, 382
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 2 cut(s) 152, 386
XspI CTAG 2 cut(s) 273, 827
ZraI GACGTC 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.