Prupe.1G308400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016110
Physical Location & Seq
Reverse (-)
30036702 .. 30038487
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G308400.1

Sequence Viewer

Length: 1056 bp
ATGCCACGCAATGCCGTTTCGTTCTCAGAAACGATGGCCATCATCAGCAGCACAACATCTCAGCCTCTGCTCTGCACCAACCGCACCATTTTCTCAACCAAACCCTCCTTCAGCCCTCGTCCCAAGACCCATTTTTGCACACAAAGGCCAGTTTTTGCGGCACTGGACCTCCAAAAGTGGCCTTCACAACAATCACCCGCAACCCACAAAAGGGACTCTAAATTGAAAACACTTGTGTGCCGCGCGGCTCGTCGAAAACCCACAACCACTGTTCAACAGGAGAATGATAGCTCAGAGAGACTGCTTCAGATTGTTCTGTGGGTTGCTGAGGCAGTCTACATTTTGTGGCTTTTTCTCCTTCCTTATGCTCCCGGAGACCCAGTGTGGGCTATAAGTTCTGATACAGTGAATTCTCTTGTGGGGCTCTCTCTGAATTTCTTCTTTATCTTGCCTCTTTTGAACTCTGTTACTGCTGGTTTGATTAATGCCCCAGTTCTTCACCCGATGTCAGAAGGGCTATTCAACTTCGTAATTGGGTGGACATTCATGTTTGCTCCTTTGCTGTTCACGGATCGTAAGAGGGACAGATACAAGGGGTCTTTAGACGTCTTATGGGGCTTTCAGATGTTTCTTACAAATACTTTTTTAATACCTTACATGGCTATTCGGCTAAATGAGGCTGAGTCAGACTACACTCCGAGCAAGCGGTCACAACTTGGGTCTGTGCTGACCAATGGTGCTCCCATTGTCGGACTTCTTGGTGGAGTGATATGTCTGATATCTGCATTGTGGGCTCTTTTTGGCCGGATGGACGGCAACTTTGGGAGCATTTCAGACAGATGGGAGTTCTTGATCAGTTATCTAGGATCAGAGAGGCTGGCTTATGCATTCATTTGGGATATTGGTCTTTACACTGTCTTCCAGCCTTGGTTGATTGGTGAAAATCTTCAAAATGTTCAGAGCAGTAAGATTGGTATTGTAAATTATCTTAGATTTGTGCCAGTGGTTGGCTTAGTTGCGTACCTTGTTTGTTTGAATATGGATGAGGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

39.47

Weight (kDa)

8.77

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccI GTMKAC 1 cut(s) 336
AccII CGCG 2 cut(s) 243, 245
AciI CCGC 6 cut(s) 82, 158, 198, 241, 245, 706
AclWI GGATC 2 cut(s) 579, 874
AcoI YGGCCR 2 cut(s) 36, 802
AcsI RAATTY 2 cut(s) 409, 433
AcuI CTGAAG 2 cut(s) 94, 290
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 1 cut(s) 1022
AfiI CCNNNNNNNGG 5 cut(s) 210, 211, 385, 749, 1007
AgsI TTSAA 6 cut(s) 226, 275, 460, 523, 950, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 92, 124
AleI CACNNNNGTG 1 cut(s) 235
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Alw21I GWGCWC 1 cut(s) 742
Alw26I GTCTC 2 cut(s) 292, 369
AlwI GGATC 2 cut(s) 579, 874
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 4 cut(s) 36, 146, 179, 802
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 2 cut(s) 409, 433
ArsI GACNNNNNNTTYG 2 cut(s) 803, 835
AseI ATTAAT 1 cut(s) 483
Asp700I GAANNNNTTC 2 cut(s) 437, 945
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 1 cut(s) 372
AsuHPI GGTGA 3 cut(s) 186, 491, 950
AvaII GGWCC 1 cut(s) 166
BalI TGGCCA 1 cut(s) 38
BanII GRGCYC 2 cut(s) 426, 796
BbsI GAAGAC 1 cut(s) 910
Bbv12I GWGCWC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 327
BbvI GCAGC 1 cut(s) 60
BccI CCATC 4 cut(s) 28, 47, 802, 834
BceAI ACGGC 1 cut(s) 829
BclI TGATCA 1 cut(s) 852
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 292, 369
BfaI CTAG 1 cut(s) 863
BisI GCNGC 4 cut(s) 49, 159, 241, 246
BlsI GCNGC 4 cut(s) 50, 160, 242, 247
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 372
BmrI ACTGGG 2 cut(s) 374, 485
BmuI ACTGGG 2 cut(s) 374, 485
BpiI GAAGAC 1 cut(s) 910
Bpu10I CCTNAGC 1 cut(s) 327
BpuMI CCSGG 1 cut(s) 372
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 926
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 366, 396
Bsc4I CCNNNNNNNGG 5 cut(s) 210, 211, 385, 749, 1007
Bse1I ACTGG 5 cut(s) 149, 168, 380, 491, 1001
Bse3DI GCAATG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 926
BseGI GGATG 2 cut(s) 813, 1048
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 210, 211, 385, 749, 1007
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 5 cut(s) 39, 74, 306, 318, 672
BseNI ACTGG 5 cut(s) 149, 168, 380, 491, 1001
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 243, 245
BshFI GGCC 4 cut(s) 38, 148, 181, 804
BsiHKAI GWGCWC 1 cut(s) 742
BsiSI CCGG 2 cut(s) 372, 805
BslFI GGGAC 3 cut(s) 105, 227, 596
BslI CCNNNNNNNGG 5 cut(s) 210, 211, 385, 749, 1007
BsmAI GTCTC 2 cut(s) 292, 369
BsmFI GGGAC 3 cut(s) 105, 227, 596
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 4 cut(s) 38, 148, 181, 804
Bso31I GGTCTC 1 cut(s) 369
Bsp1286I GDGCHC 3 cut(s) 426, 742, 796
Bsp143I GATC 3 cut(s) 571, 852, 866
BspACI CCGC 6 cut(s) 82, 158, 198, 241, 245, 706
BspANI GGCC 4 cut(s) 38, 148, 181, 804
BspCNI CTCAG 5 cut(s) 38, 73, 305, 319, 673
BspFNI CGCG 2 cut(s) 243, 245
BspPI GGATC 2 cut(s) 579, 874
BspTNI GGTCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 16
BsrI ACTGG 5 cut(s) 149, 168, 380, 491, 1001
BssECI CCNNGG 1 cut(s) 926
BssMI GATC 3 cut(s) 571, 852, 866
BssNI GRCGYC 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 926
Bst4CI ACNGT 4 cut(s) 271, 406, 916, 1053
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 704, 879
BstDEI CTNAG 7 cut(s) 25, 60, 292, 327, 681, 989, 1012
BstF5I GGATG 2 cut(s) 813, 1048
BstFNI CGCG 2 cut(s) 243, 245
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 3 cut(s) 574, 855, 869
BstMAI GTCTC 2 cut(s) 292, 369
BstMBI GATC 3 cut(s) 571, 852, 866
BstMWI GCNNNNNNNGC 2 cut(s) 81, 791
BstSCI CCNGG 1 cut(s) 370
BstUI CGCG 2 cut(s) 243, 245
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 910
BsuRI GGCC 4 cut(s) 38, 148, 181, 804
BtsCI GGATG 2 cut(s) 813, 1048
BtsIMutI CAGTG 6 cut(s) 161, 267, 387, 411, 912, 1008
Cac8I GCNNGC 2 cut(s) 704, 879
CaiI CAGNNNCTG 1 cut(s) 67
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 1021
CviAII CATG 2 cut(s) 547, 658
CviQI GTAC 1 cut(s) 1021
DdeI CTNAG 7 cut(s) 25, 60, 292, 327, 681, 989, 1012
DpnI GATC 3 cut(s) 573, 854, 868
DpnII GATC 3 cut(s) 571, 852, 866
EaeI YGGCCR 2 cut(s) 36, 802
Eco130I CCWWGG 1 cut(s) 926
Eco24I GRGCYC 2 cut(s) 426, 796
Eco31I GGTCTC 1 cut(s) 369
Eco32I GATATC 1 cut(s) 780
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 94, 290
EcoRI GAATTC 1 cut(s) 409
EcoRV GATATC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 926
EcoT22I ATGCAT 1 cut(s) 889
EcoT38I GRGCYC 2 cut(s) 426, 796
ErhI CCWWGG 1 cut(s) 926
FaeI CATG 2 cut(s) 550, 661
FaiI YATR 8 cut(s) 366, 392, 548, 613, 659, 772, 885, 1040
FaqI GGGAC 3 cut(s) 105, 227, 596
FatI CATG 2 cut(s) 546, 657
FauI CCCGC 1 cut(s) 205
FbaI TGATCA 1 cut(s) 852
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 49, 159, 241, 246
FokI GGATG 1 cut(s) 820
FriOI GRGCYC 2 cut(s) 426, 796
Fsp4HI GCNGC 4 cut(s) 49, 159, 241, 246
FspBI CTAG 1 cut(s) 863
GlaI GCGC 1 cut(s) 244
GluI GCNGC 4 cut(s) 49, 159, 241, 246
HaeIII GGCC 4 cut(s) 38, 148, 181, 804
HapII CCGG 2 cut(s) 372, 805
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 2 cut(s) 550, 661
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 215, 683
HpaII CCGG 2 cut(s) 372, 805
HphI GGTGA 3 cut(s) 186, 491, 950
Hpy166II GTNNAC 3 cut(s) 337, 540, 567
Hpy188III TCNNGA 1 cut(s) 850
Hpy8I GTNNAC 3 cut(s) 337, 540, 567
Hpy99I CGWCG 1 cut(s) 255
HpyAV CCTTC 4 cut(s) 118, 192, 368, 506
HpyCH4III ACNGT 4 cut(s) 271, 406, 916, 1053
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 4 cut(s) 75, 138, 785, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 791
HpyF3I CTNAG 7 cut(s) 25, 60, 292, 327, 681, 989, 1012
HpySE526I ACGT 1 cut(s) 606
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 2 cut(s) 550, 661
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 852
Kzo9I GATC 3 cut(s) 571, 852, 866
LmnI GCTCC 4 cut(s) 373, 559, 745, 825
Lsp1109I GCAGC 1 cut(s) 60
MaeI CTAG 1 cut(s) 863
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 2 cut(s) 466, 708
MalI GATC 3 cut(s) 573, 854, 868
MboI GATC 3 cut(s) 571, 852, 866
MboII GAAGA 4 cut(s) 430, 488, 910, 938
MhlI GDGCHC 3 cut(s) 426, 742, 796
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 5 cut(s) 221, 409, 433, 531, 982
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 2 cut(s) 209, 692
MmeI TCCRAC 1 cut(s) 730
Mox20I TGGCCA 1 cut(s) 38
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 2 cut(s) 437, 945
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 483, 647
MslI CAYNNNNRTG 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 2 cut(s) 372, 805
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 1 cut(s) 887
MvnI CGCG 2 cut(s) 243, 245
MwoI GCNNNNNNNGC 2 cut(s) 81, 791
NciI CCSGG 1 cut(s) 372
NdeII GATC 3 cut(s) 571, 852, 866
NlaIII CATG 2 cut(s) 550, 661
NmuCI GTSAC 1 cut(s) 708
NsiI ATGCAT 1 cut(s) 889
OliI CACNNNNGTG 1 cut(s) 235
PctI GAATGC 1 cut(s) 887
PdmI GAANNNNTTC 2 cut(s) 437, 945
PflMI CCANNNNNTGG 1 cut(s) 1007
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 4 cut(s) 50, 160, 242, 247
PleI GAGTC 2 cut(s) 209, 691
PpsI GAGTC 2 cut(s) 209, 691
PshBI ATTAAT 1 cut(s) 483
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 67
RsaI GTAC 1 cut(s) 1022
RsaNI GTAC 1 cut(s) 1021
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 2 cut(s) 483, 647
SatI GCNGC 4 cut(s) 49, 159, 241, 246
Sau3AI GATC 3 cut(s) 571, 852, 866
Sau96I GGNCC 1 cut(s) 166
SchI GAGTC 2 cut(s) 209, 692
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 3 cut(s) 426, 742, 796
SetI ASST 5 cut(s) 171, 293, 609, 655, 1026
SinI GGWCC 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 235
Sse9I AATT 5 cut(s) 221, 409, 433, 531, 982
SsiI CCGC 6 cut(s) 82, 158, 198, 241, 245, 706
SspMI CTAG 1 cut(s) 863
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 926
TaaI ACNGT 4 cut(s) 271, 406, 916, 1053
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 253
TasI AATT 5 cut(s) 221, 409, 433, 531, 982
TauI GCSGC 3 cut(s) 161, 243, 248
Tru1I TTAA 2 cut(s) 483, 647
Tru9I TTAA 2 cut(s) 483, 647
TscAI CASTG 6 cut(s) 168, 274, 387, 411, 919, 1008
TseFI GTSAC 1 cut(s) 708
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 708
TspDTI ATGAA 2 cut(s) 535, 880
TspGWI ACGGA 1 cut(s) 584
TspRI CASTG 6 cut(s) 168, 274, 387, 411, 919, 1008
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 1 cut(s) 166
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 2 cut(s) 409, 433
XmiI GTMKAC 1 cut(s) 336
XmnI GAANNNNTTC 2 cut(s) 437, 945
XspI CTAG 1 cut(s) 863
ZraI GACGTC 1 cut(s) 607
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.