Rorug04G0285800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016110
Physical Location & Seq
Forward (+)
45943304 .. 45944160
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0285800.1

Sequence Viewer

Length: 348 bp
ATGTCCTCCAGATTCCAAATCCCAATCCTCTCTCTCTCTGATTCTCTCACCCCCAATGGCGTCACCCACTCCCGGCTCCTCCAGACCATGAACTCTGCCATCAAAGTCACCGGCGACCACCACTCTGCCCTACTCCAAGTCATCGGCATAGTCCCCGCCCTCGCCGACTCCGACGACCTCTGGCCCAACCAAGGCTTCTACGTCCAGCTCTCCGACTCCCTCAACTCCACCTACGTCTCCCTCTCCGAGAAAGACACCGATCTCATCCTCGCCAACCGCTTCCAGCTCGGCCAGTTCGTCTATATCGACCGCTTCGATTTCGACTCTCCGGTGCAGCGCATCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.78

Weight (kDa)

4.76

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 24 - 114 1.4e-38 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 156, 277, 310
AcoI YGGCCR 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 72, 191
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 2 cut(s) 208, 286
AluI AGCT 2 cut(s) 208, 286
Alw26I GTCTC 1 cut(s) 241
AoxI GGCC 2 cut(s) 182, 289
ApeKI GCWGC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 40, 55, 100
BccI CCATC 1 cut(s) 107
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 241
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 73
BpmI CTGGAG 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 190
BsaWI WCCGGW 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 191
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 190
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 72, 191
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 184, 291
BsiEI CGRYCG 1 cut(s) 310
BsiSI CCGG 3 cut(s) 73, 111, 329
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 72, 191
BsmAI GTCTC 1 cut(s) 241
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 137
BsnI GGCC 2 cut(s) 184, 291
Bsp143I GATC 1 cut(s) 259
BspACI CCGC 3 cut(s) 156, 277, 310
BspANI GGCC 2 cut(s) 184, 291
BspLI GGNNCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 259
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 190
BstACI GRCGYC 1 cut(s) 60
BstF5I GGATG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 241
BstMBI GATC 1 cut(s) 259
BstMCI CGRYCG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 71
BsuRI GGCC 2 cut(s) 184, 291
BtgZI GCGATG 1 cut(s) 325
BtsCI GGATG 1 cut(s) 264
CfoI GCGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 183
CseI GACGC 1 cut(s) 49
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 76, 184, 195, 208, 286, 291
CviKI_1 RGCY 6 cut(s) 76, 184, 195, 208, 286, 291
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 289
Eco130I CCWWGG 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 149, 303
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 335
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 184, 291
HapII CCGG 3 cut(s) 73, 111, 329
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 339
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 5 cut(s) 12, 41, 167, 215, 323
HpaII CCGG 3 cut(s) 73, 111, 329
HphI GGTGA 3 cut(s) 40, 55, 100
Hpy188I TCNGA 4 cut(s) 40, 172, 214, 247
Hpy188III TCNNGA 2 cut(s) 9, 82
Hpy99I CGWCG 1 cut(s) 176
HpyCH4IV ACGT 2 cut(s) 201, 234
HpyCH4V TGCA 1 cut(s) 334
HpySE526I ACGT 2 cut(s) 201, 234
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 9 cut(s) 22, 86, 95, 124, 166, 218, 296, 305, 342
MaeII ACGT 2 cut(s) 201, 234
MaeIII GTNAC 2 cut(s) 61, 106
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MlyI GAGTC 3 cut(s) 161, 209, 317
MmeI TCCRAC 2 cut(s) 195, 237
MnlI CCTC 8 cut(s) 16, 38, 89, 170, 188, 230, 251, 278
MspI CCGG 3 cut(s) 73, 111, 329
MspR9I CCNGG 1 cut(s) 73
NciI CCSGG 1 cut(s) 73
NdeII GATC 1 cut(s) 259
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 61, 106
PcsI WCGNNNNNNNCGW 4 cut(s) 168, 294, 303, 312
PfeI GAWTC 2 cut(s) 12, 41
PkrI GCNGC 1 cut(s) 336
PleI GAGTC 3 cut(s) 161, 209, 317
PpsI GAGTC 3 cut(s) 161, 209, 317
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 183
SatI GCNGC 1 cut(s) 335
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 3 cut(s) 161, 209, 317
ScrFI CCNGG 1 cut(s) 73
SetI ASST 6 cut(s) 180, 204, 210, 233, 237, 288
SgrAI CRCCGGYG 1 cut(s) 110
SsiI CCGC 3 cut(s) 156, 277, 310
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 190
TaiI ACGT 2 cut(s) 204, 237
TaqI TCGA 3 cut(s) 306, 315, 321
TfiI GAWTC 2 cut(s) 12, 41
TseFI GTSAC 2 cut(s) 61, 106
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 2 cut(s) 61, 106
TspDTI ATGAA 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.