pycom13g03870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016110
Physical Location & Seq
Forward (+)
2573730 .. 2575355
1626 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03870.2

Sequence Viewer

Length: 909 bp
ATGGCTGTCGTCAGCGCTACATCTCCGTCTCTGCTCTGCTGCACCGACCGCCGCACCGTTTTTTCAGCTAGACCCTCACTAGGCTCTTGGCCCAAGACCCAATTTTGCACACCGAAGCCATTTTTGGCGGCACTGGACTCCCAAACGCTGACTTCACAACCGCCCGCAACCTACAAAAGGGACTCCAAACTGAAGCCGCTCGTGTGCCGCGCGGATCGCCGGAAACCCACCACCTCCGTCCAGCAGGAGAACGACGGCTCAGAACGGCTGCTTCAGATTGCTCTGTGGCTTGCTGAGGGAGTCTACATTTTGTGGCTTTTTCTCCTTCCCTATGCTCCTGGAGACCCAGTGTGGTCTATTAGTTCGGATACAGTGAACTCTCTTGTGGGGCTCTCTCTTAATTTCTTCTTCATCTTGCCTTTTCTCAACTCCGTTGGTGTTGGTTTGATTGATGCCCCAGTTCTTCACCCGATGTCTGAGGGACTATTCAACTTTGTGATTGGGTGGACATTCATGTTTGCTCCTCTGCTGTTCACGGACCGAAAGAGGGACAGATACAAGTGGTCTCTCGACGCCTTATGGGGTTTTCAGATGTTTCTCACAAACACTTTTCTAATACCTTACATGGCTATTCGGCTGAATGAGGCTGAGTCCGACTACACTCCAAGCACGCGCTCACAGCTTGGATCAGTGATGACTGGTGGAGCTCCCATCGTTGGACTTGCTGGTGGAGCAATATGTCTAATATCTGCATTATGGGCTCTTTTTGGCCGGATGGACGGCGACTTTGGAAGCATTTCAGACCGATGGGAGTTCTTGGATCGGTTACCTAGGATCGGAGAGGCTGGCTTATGCATTCATTTGGGACATCTGTCTTTACGCTGTCTTCCAGCCCTGGTTGATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.51

Weight (kDa)

8.16

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 199
AccI GTMKAC 1 cut(s) 303
AccII CGCG 3 cut(s) 210, 212, 673
AciI CCGC 8 cut(s) 49, 52, 128, 161, 165, 197, 208, 212
AclWI GGATC 4 cut(s) 222, 694, 828, 842
AcoI YGGCCR 1 cut(s) 769
AcuI CTGAAG 2 cut(s) 212, 257
AcyI GRCGYC 1 cut(s) 573
AfeI AGCGCT 1 cut(s) 16
AfiI CCNNNNNNNGG 5 cut(s) 80, 177, 547, 716, 836
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 2 cut(s) 337, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 3 cut(s) 68, 682, 707
AluI AGCT 3 cut(s) 68, 682, 707
Alw21I GWGCWC 1 cut(s) 709
Alw26I GTCTC 3 cut(s) 33, 336, 570
AlwI GGATC 4 cut(s) 222, 694, 828, 842
Aor51HI AGCGCT 1 cut(s) 16
AoxI GGCC 2 cut(s) 89, 769
ApeKI GCWGC 2 cut(s) 39, 268
ArsI GACNNNNNNTTYG 2 cut(s) 770, 802
Asp700I GAANNNNTTC 1 cut(s) 796
AspA2I CCTAGG 1 cut(s) 830
AspLEI GCGC 3 cut(s) 17, 212, 675
AspS9I GGNCC 2 cut(s) 90, 538
AsuHPI GGTGA 1 cut(s) 458
AvaII GGWCC 1 cut(s) 538
AvrII CCTAGG 1 cut(s) 830
BanII GRGCYC 3 cut(s) 393, 709, 763
BauI CACGAG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 709
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 26, 255
BccI CCATC 3 cut(s) 719, 769, 801
BceAI ACGGC 3 cut(s) 271, 281, 796
BciT130I CCWGG 2 cut(s) 339, 896
BciVI GTATCC 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 33, 336, 570
BfaI CTAG 3 cut(s) 69, 80, 831
BfoI RGCGCY 1 cut(s) 18
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 6 cut(s) 40, 52, 129, 197, 208, 269
BlnI CCTAGG 1 cut(s) 830
BlsI GCNGC 6 cut(s) 41, 53, 130, 198, 209, 270
Bme1390I CCNGG 2 cut(s) 339, 896
Bme18I GGWCC 1 cut(s) 538
BmgT120I GGNCC 2 cut(s) 90, 538
BmrFI CCNGG 2 cut(s) 339, 896
BmrI ACTGGG 2 cut(s) 341, 452
BmsI GCATC 1 cut(s) 442
BmuI ACTGGG 2 cut(s) 341, 452
BoxI GACNNNNGTC 1 cut(s) 871
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 573
BsaI GGTCTC 2 cut(s) 336, 570
BsaJI CCNNGG 2 cut(s) 830, 894
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 80, 177, 547, 716, 836
Bse1I ACTGG 4 cut(s) 138, 347, 458, 703
BseBI CCWGG 2 cut(s) 339, 896
BseDI CCNNGG 2 cut(s) 830, 894
BseGI GGATG 1 cut(s) 780
BseLI CCNNNNNNNGG 5 cut(s) 80, 177, 547, 716, 836
BseMII CTCAG 4 cut(s) 273, 285, 468, 639
BseNI ACTGG 4 cut(s) 138, 347, 458, 703
BseRI GAGGAG 1 cut(s) 513
BseXI GCAGC 2 cut(s) 26, 255
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 3 cut(s) 210, 212, 673
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 91, 771
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 709
BsiSI CCGG 2 cut(s) 220, 772
BslFI GGGAC 4 cut(s) 194, 495, 563, 879
BslI CCNNNNNNNGG 5 cut(s) 80, 177, 547, 716, 836
BsmAI GTCTC 3 cut(s) 33, 336, 570
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 4 cut(s) 194, 495, 563, 879
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 2 cut(s) 91, 771
Bso31I GGTCTC 2 cut(s) 336, 570
Bsp1286I GDGCHC 3 cut(s) 393, 709, 763
Bsp143I GATC 4 cut(s) 214, 686, 820, 834
BspACI CCGC 8 cut(s) 49, 52, 128, 161, 165, 197, 208, 212
BspANI GGCC 2 cut(s) 91, 771
BspCNI CTCAG 4 cut(s) 272, 286, 469, 640
BspFNI CGCG 3 cut(s) 210, 212, 673
BspPI GGATC 4 cut(s) 222, 694, 828, 842
BspTNI GGTCTC 2 cut(s) 336, 570
BsrBI CCGCTC 1 cut(s) 199
BsrI ACTGG 4 cut(s) 138, 347, 458, 703
BssECI CCNNGG 2 cut(s) 830, 894
BssMI GATC 4 cut(s) 214, 686, 820, 834
BssNI GRCGYC 1 cut(s) 573
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 830
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 339, 896
Bst4CI ACNGT 2 cut(s) 58, 373
BstACI GRCGYC 1 cut(s) 573
BstC8I GCNNGC 4 cut(s) 165, 291, 671, 847
BstDEI CTNAG 4 cut(s) 259, 294, 477, 648
BstEII GGTNACC 1 cut(s) 825
BstENI CCTNNNNNAGG 1 cut(s) 175
BstF5I GGATG 1 cut(s) 780
BstFNI CGCG 3 cut(s) 210, 212, 673
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 3 cut(s) 17, 212, 675
BstKTI GATC 4 cut(s) 217, 689, 823, 837
BstMAI GTCTC 3 cut(s) 33, 336, 570
BstMBI GATC 4 cut(s) 214, 686, 820, 834
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 5 cut(s) 48, 216, 679, 731, 758
BstNI CCWGG 2 cut(s) 339, 896
BstPAI GACNNNNGTC 1 cut(s) 871
BstPI GGTNACC 1 cut(s) 825
BstSCI CCNGG 2 cut(s) 337, 894
BstUI CGCG 3 cut(s) 210, 212, 673
BstV1I GCAGC 2 cut(s) 26, 255
BstV2I GAAGAC 1 cut(s) 878
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 91, 771
BtsCI GGATG 1 cut(s) 780
BtsIMutI CAGTG 4 cut(s) 131, 354, 378, 696
Cac8I GCNNGC 4 cut(s) 165, 291, 671, 847
CfoI GCGC 3 cut(s) 17, 212, 675
Cfr13I GGNCC 2 cut(s) 90, 538
CpoI CGGWCCG 1 cut(s) 538
CseI GACGC 1 cut(s) 581
CspI CGGWCCG 1 cut(s) 538
CviAII CATG 2 cut(s) 514, 625
DdeI CTNAG 4 cut(s) 259, 294, 477, 648
DpnI GATC 4 cut(s) 216, 688, 822, 836
DpnII GATC 4 cut(s) 214, 686, 820, 834
EaeI YGGCCR 1 cut(s) 769
Ecl136II GAGCTC 1 cut(s) 707
Eco130I CCWWGG 1 cut(s) 830
Eco24I GRGCYC 3 cut(s) 393, 709, 763
Eco31I GGTCTC 2 cut(s) 336, 570
Eco47I GGWCC 1 cut(s) 538
Eco47III AGCGCT 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 707
Eco57I CTGAAG 2 cut(s) 212, 257
Eco91I GGTNACC 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 707
EcoNI CCTNNNNNAGG 1 cut(s) 175
EcoO65I GGTNACC 1 cut(s) 825
EcoRII CCWGG 2 cut(s) 337, 894
EcoT14I CCWWGG 1 cut(s) 830
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 3 cut(s) 393, 709, 763
ErhI CCWWGG 1 cut(s) 830
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 2 cut(s) 517, 628
FaiI YATR 7 cut(s) 333, 515, 580, 626, 739, 757, 853
FaqI GGGAC 4 cut(s) 194, 495, 563, 879
FatI CATG 2 cut(s) 513, 624
FauI CCCGC 1 cut(s) 172
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 6 cut(s) 40, 52, 129, 197, 208, 269
FokI GGATG 1 cut(s) 787
FriOI GRGCYC 3 cut(s) 393, 709, 763
Fsp4HI GCNGC 6 cut(s) 40, 52, 129, 197, 208, 269
FspBI CTAG 3 cut(s) 69, 80, 831
GlaI GCGC 3 cut(s) 16, 211, 674
GluI GCNGC 6 cut(s) 40, 52, 129, 197, 208, 269
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 2 cut(s) 91, 771
HapII CCGG 2 cut(s) 220, 772
HgaI GACGC 1 cut(s) 581
HhaI GCGC 3 cut(s) 17, 212, 675
Hin1I GRCGYC 1 cut(s) 573
Hin1II CATG 2 cut(s) 517, 628
Hin6I GCGC 3 cut(s) 15, 210, 673
HinP1I GCGC 3 cut(s) 15, 210, 673
HinfI GANTC 4 cut(s) 137, 182, 300, 650
HpaII CCGG 2 cut(s) 220, 772
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 4 cut(s) 304, 376, 507, 534
Hpy188I TCNGA 8 cut(s) 262, 276, 367, 478, 591, 655, 802, 839
Hpy188III TCNNGA 1 cut(s) 569
Hpy8I GTNNAC 4 cut(s) 304, 376, 507, 534
Hpy99I CGWCG 2 cut(s) 257, 575
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 2 cut(s) 58, 373
HpyCH4V TGCA 4 cut(s) 42, 108, 752, 855
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 216, 679, 731, 758
HpyF3I CTNAG 4 cut(s) 259, 294, 477, 648
Hsp92I GRCGYC 1 cut(s) 573
Hsp92II CATG 2 cut(s) 517, 628
HspAI GCGC 3 cut(s) 15, 210, 673
Kzo9I GATC 4 cut(s) 214, 686, 820, 834
LmnI GCTCC 5 cut(s) 340, 526, 704, 712, 731
Lsp1109I GCAGC 2 cut(s) 26, 255
LweI GCATC 1 cut(s) 442
MaeI CTAG 3 cut(s) 69, 80, 831
MaeIII GTNAC 1 cut(s) 825
MalI GATC 4 cut(s) 216, 688, 822, 836
MbiI CCGCTC 1 cut(s) 199
MboI GATC 4 cut(s) 214, 686, 820, 834
MboII GAAGA 4 cut(s) 397, 400, 455, 878
MhlI GDGCHC 3 cut(s) 393, 709, 763
MluCI AATT 2 cut(s) 101, 400
MlyI GAGTC 4 cut(s) 131, 176, 309, 659
MmeI TCCRAC 2 cut(s) 678, 697
MnlI CCTC 8 cut(s) 85, 244, 289, 472, 534, 540, 637, 835
Mph1103I ATGCAT 1 cut(s) 857
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 1 cut(s) 399
MspI CCGG 2 cut(s) 220, 772
MspR9I CCNGG 2 cut(s) 339, 896
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 2 cut(s) 339, 896
MvnI CGCG 3 cut(s) 210, 212, 673
MwoI GCNNNNNNNGC 5 cut(s) 48, 216, 679, 731, 758
NdeII GATC 4 cut(s) 214, 686, 820, 834
NlaIII CATG 2 cut(s) 517, 628
NsiI ATGCAT 1 cut(s) 857
PctI GAATGC 1 cut(s) 855
PdmI GAANNNNTTC 1 cut(s) 796
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 6 cut(s) 41, 53, 130, 198, 209, 270
PleI GAGTC 4 cut(s) 131, 176, 308, 658
PpsI GAGTC 4 cut(s) 131, 176, 308, 658
PshAI GACNNNNGTC 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 709
Psp6I CCWGG 2 cut(s) 337, 894
PspEI GGTNACC 1 cut(s) 825
PspGI CCWGG 2 cut(s) 337, 894
PspPI GGNCC 2 cut(s) 90, 538
Rsr2I CGGWCCG 1 cut(s) 538
RsrII CGGWCCG 1 cut(s) 538
SacI GAGCTC 1 cut(s) 709
SaqAI TTAA 1 cut(s) 399
SatI GCNGC 6 cut(s) 40, 52, 129, 197, 208, 269
Sau3AI GATC 4 cut(s) 214, 686, 820, 834
Sau96I GGNCC 2 cut(s) 90, 538
SchI GAGTC 4 cut(s) 131, 176, 309, 659
ScrFI CCNGG 2 cut(s) 339, 896
SduI GDGCHC 3 cut(s) 393, 709, 763
SetI ASST 8 cut(s) 70, 173, 236, 622, 684, 709, 832, 908
SfaNI GCATC 1 cut(s) 442
SinI GGWCC 1 cut(s) 538
Sse9I AATT 2 cut(s) 101, 400
SsiI CCGC 8 cut(s) 49, 52, 128, 161, 165, 197, 208, 212
SspMI CTAG 3 cut(s) 69, 80, 831
SstI GAGCTC 1 cut(s) 709
StyD4I CCNGG 2 cut(s) 337, 894
StyI CCWWGG 1 cut(s) 830
TaaI ACNGT 2 cut(s) 58, 373
TaqI TCGA 1 cut(s) 570
TaqII GACCGA 2 cut(s) 555, 819
TasI AATT 2 cut(s) 101, 400
TauI GCSGC 4 cut(s) 54, 131, 199, 210
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 4 cut(s) 138, 354, 378, 696
TseI GCWGC 2 cut(s) 39, 268
TspDTI ATGAA 3 cut(s) 400, 502, 848
TspGWI ACGGA 4 cut(s) 15, 226, 421, 551
TspRI CASTG 4 cut(s) 138, 354, 378, 696
VpaK11BI GGWCC 1 cut(s) 538
XagI CCTNNNNNAGG 1 cut(s) 175
XmaJI CCTAGG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 3 cut(s) 69, 80, 831
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.