Rroxscaffold_5G00376740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016110
Physical Location & Seq
Forward (+)
57367270 .. 57368991
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376740.1

Sequence Viewer

Length: 981 bp
ATGACCACCGTTACTACGACATCTCAGCTTCTGCTCTGCACCAACCGCGCCATTTTCGCAACCCGAACCCGATTCCGCAAACCCGACCCTTTAGCATTGGAAAAATGGTCTTCACAGTCACTCAGGGTCTCAAAGTTGAAGCCACTAGTTGTGTGCCACGCGGCGCGTCGGAAACCCACCACCGCTATCCAACCGGAGACTCAAAATGAAAATTCCGGGCGACTGTTTCAGACTAGTCTCTGGGTTGCTGAAGCAGTCTACATTCTGTGGCTGTTTCTTCTTCCCTACGCTCCTGGAGACCCAGTGTGGGCTATAAGTTCAGATACAGTGAATTCTCTTCTGGGCCTCTCTTTGAATTTCTTCTTTGTCTTGCCTCTTTTCAACTCTGTAGTTGGTATTAATTTTATTGATGCCCCAGTTCTTCACCCGATGTCTGAAGGGCTATTCAACTTTGTGATTGGGTGGACATTCATGTTTGCTCCTTTGCTTTTCACTGATGGGAAGAGGGATAGATACAAAGGGTCTCTTGATGTCTTATGGGGCTTTCAGATGTTCCTTACAAATACATTTTTGATACCTTACATGGCTATTCGGCTGAATGCACCTGAATCAGACTGCACTCCCAGCAAGCGCTCACAGCTTGGGGATGTGATGACCAACGGTGCTCCCATTGTCGGACTTGTTGGTGGAGGGATATGTCTGATATCTGCATTATGGGCACTTTATGGCCGAATGGACAGCAATTTCGGTGGCATTTCTGAGCGATGGGAGTTCTTGATCAATTATCTAGGATCCGAGAGGCTGGCTTATGCATTCATTTGGGATATAGTTCTCTATAGCGTCTTTCAGCCTTGGTTGATAGGCGATAATCTTCAAAATGTTAAGAGCGATAAGATTGGTATTGTAAATTACCTTAGATTTGTGCCAGTGATTGGCTTAGTTGCTTACCTTCTTTGTTTGAACCTTGATGAGGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

36.67

Weight (kDa)

7.59

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 932
AccI GTMKAC 1 cut(s) 258
AccII CGCG 3 cut(s) 48, 161, 166
AciI CCGC 4 cut(s) 46, 76, 161, 183
AclWI GGATC 2 cut(s) 786, 799
AcoI YGGCCR 1 cut(s) 727
AcsI RAATTY 3 cut(s) 211, 331, 355
AcuI CTGAAG 2 cut(s) 270, 456
AfeI AGCGCT 1 cut(s) 632
AfiI CCNNNNNNNGG 4 cut(s) 307, 674, 932, 970
AgsI TTSAA 6 cut(s) 139, 355, 382, 448, 875, 961
AhlI ACTAGT 2 cut(s) 145, 233
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 28, 640
AluI AGCT 2 cut(s) 28, 640
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 5 cut(s) 133, 191, 242, 291, 528
AlwI GGATC 2 cut(s) 786, 799
AlwNI CAGNNNCTG 1 cut(s) 31
Aor51HI AGCGCT 1 cut(s) 632
AoxI GGCC 2 cut(s) 343, 727
ApoI RAATTY 3 cut(s) 211, 331, 355
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
AseI ATTAAT 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 359
AspLEI GCGC 3 cut(s) 50, 166, 633
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 416
BaeGI GKGCMC 1 cut(s) 721
BamHI GGATCC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 667
BccI CCATC 2 cut(s) 491, 759
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 5 cut(s) 133, 191, 242, 291, 528
BcuI ACTAGT 2 cut(s) 145, 233
BfaI CTAG 3 cut(s) 146, 234, 788
BfmI CTRYAG 2 cut(s) 387, 835
BfoI RGCGCY 1 cut(s) 634
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 217, 294
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 793
BmrFI CCNGG 2 cut(s) 217, 294
BmrI ACTGGG 2 cut(s) 296, 410
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 2 cut(s) 296, 410
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 217
BsaI GGTCTC 3 cut(s) 133, 291, 528
BsaJI CCNNGG 1 cut(s) 851
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 307, 674, 932, 970
Bse1I ACTGG 3 cut(s) 302, 416, 926
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 851
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 4 cut(s) 307, 674, 932, 970
BseMII CTCAG 3 cut(s) 38, 136, 750
BseNI ACTGG 3 cut(s) 302, 416, 926
BseSI GKGCMC 1 cut(s) 721
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 2 cut(s) 22, 601
Bsh1236I CGCG 3 cut(s) 48, 161, 166
BshFI GGCC 2 cut(s) 345, 729
BsiHKAI GWGCWC 1 cut(s) 667
BsiSI CCGG 2 cut(s) 194, 216
BslI CCNNNNNNNGG 4 cut(s) 307, 674, 932, 970
BsmAI GTCTC 5 cut(s) 133, 191, 242, 291, 528
BsmI GAATGC 2 cut(s) 604, 812
BsnI GGCC 2 cut(s) 345, 729
Bso31I GGTCTC 3 cut(s) 133, 291, 528
Bsp1286I GDGCHC 2 cut(s) 667, 721
Bsp143I GATC 2 cut(s) 777, 791
BspACI CCGC 4 cut(s) 46, 76, 161, 183
BspANI GGCC 2 cut(s) 345, 729
BspCNI CTCAG 3 cut(s) 37, 135, 751
BspFNI CGCG 3 cut(s) 48, 161, 166
BspLI GGNNCC 1 cut(s) 793
BspPI GGATC 2 cut(s) 786, 799
BspTNI GGTCTC 3 cut(s) 133, 291, 528
BsrI ACTGG 3 cut(s) 302, 416, 926
BssECI CCNNGG 1 cut(s) 851
BssMI GATC 2 cut(s) 777, 791
BssT1I CCWWGG 1 cut(s) 851
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 6 cut(s) 10, 117, 225, 328, 662, 978
Bst6I CTCTTC 2 cut(s) 342, 497
BstC8I GCNNGC 2 cut(s) 629, 804
BstDEI CTNAG 5 cut(s) 24, 122, 759, 914, 937
BstENI CCTNNNNNAGG 1 cut(s) 968
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 3 cut(s) 48, 161, 166
BstH2I RGCGCY 1 cut(s) 634
BstHHI GCGC 3 cut(s) 50, 166, 633
BstKTI GATC 2 cut(s) 780, 794
BstMAI GTCTC 5 cut(s) 133, 191, 242, 291, 528
BstMBI GATC 2 cut(s) 777, 791
BstMWI GCNNNNNNNGC 5 cut(s) 45, 56, 624, 637, 716
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 215, 292
BstSFI CTRYAG 2 cut(s) 387, 835
BstSLI GKGCMC 1 cut(s) 721
BstUI CGCG 3 cut(s) 48, 161, 166
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 2 cut(s) 345, 729
BtgZI GCGATG 1 cut(s) 778
BtsCI GGATG 1 cut(s) 652
BtsIMutI CAGTG 4 cut(s) 309, 333, 492, 933
Cac8I GCNNGC 2 cut(s) 629, 804
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 3 cut(s) 50, 166, 633
Cfr13I GGNCC 1 cut(s) 343
CseI GACGC 2 cut(s) 155, 829
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 2 cut(s) 472, 583
DdeI CTNAG 5 cut(s) 24, 122, 759, 914, 937
DpnI GATC 2 cut(s) 779, 793
DpnII GATC 2 cut(s) 777, 791
EaeI YGGCCR 1 cut(s) 727
Eam1104I CTCTTC 2 cut(s) 342, 497
EarI CTCTTC 2 cut(s) 342, 497
Eco130I CCWWGG 1 cut(s) 851
Eco31I GGTCTC 3 cut(s) 133, 291, 528
Eco32I GATATC 1 cut(s) 705
Eco47III AGCGCT 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 270, 456
EcoNI CCTNNNNNAGG 1 cut(s) 968
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 292
EcoRV GATATC 1 cut(s) 705
EcoT14I CCWWGG 1 cut(s) 851
EcoT22I ATGCAT 1 cut(s) 814
ErhI CCWWGG 1 cut(s) 851
FaeI CATG 2 cut(s) 475, 586
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 2 cut(s) 471, 582
FbaI TGATCA 1 cut(s) 777
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 659
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 3 cut(s) 146, 234, 788
GlaI GCGC 3 cut(s) 49, 165, 632
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 634
HaeIII GGCC 2 cut(s) 345, 729
HapII CCGG 2 cut(s) 194, 216
HgaI GACGC 2 cut(s) 155, 829
HhaI GCGC 3 cut(s) 50, 166, 633
Hin1II CATG 2 cut(s) 475, 586
Hin6I GCGC 3 cut(s) 48, 164, 631
HinP1I GCGC 3 cut(s) 48, 164, 631
HinfI GANTC 3 cut(s) 72, 199, 608
HpaII CCGG 2 cut(s) 194, 216
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 259, 465
Hpy188III TCNNGA 2 cut(s) 527, 775
Hpy8I GTNNAC 2 cut(s) 259, 465
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 2 cut(s) 431, 959
HpyCH4III ACNGT 6 cut(s) 10, 117, 225, 328, 662, 978
HpyCH4V TGCA 5 cut(s) 39, 602, 618, 710, 812
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 56, 624, 637, 716
HpyF3I CTNAG 5 cut(s) 24, 122, 759, 914, 937
Hsp92II CATG 2 cut(s) 475, 586
HspAI GCGC 3 cut(s) 48, 164, 631
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 2 cut(s) 777, 791
LmnI GCTCC 3 cut(s) 295, 484, 670
LweI GCATC 1 cut(s) 400
MaeI CTAG 3 cut(s) 146, 234, 788
MaeIII GTNAC 2 cut(s) 10, 117
MalI GATC 2 cut(s) 779, 793
MboI GATC 2 cut(s) 777, 791
MboII GAAGA 8 cut(s) 102, 269, 272, 329, 352, 413, 514, 863
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 2 cut(s) 667, 721
MluCI AATT 7 cut(s) 211, 331, 355, 400, 742, 781, 907
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 3 cut(s) 149, 214, 655
MnlI CCTC 6 cut(s) 356, 384, 498, 683, 792, 964
Mph1103I ATGCAT 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 2 cut(s) 399, 882
MspI CCGG 2 cut(s) 194, 216
MspR9I CCNGG 2 cut(s) 217, 294
Mva1269I GAATGC 2 cut(s) 604, 812
MvaI CCWGG 1 cut(s) 294
MvnI CGCG 3 cut(s) 48, 161, 166
MwoI GCNNNNNNNGC 5 cut(s) 45, 56, 624, 637, 716
NciI CCSGG 1 cut(s) 217
NdeII GATC 2 cut(s) 777, 791
NlaIII CATG 2 cut(s) 475, 586
NlaIV GGNNCC 1 cut(s) 793
NmuCI GTSAC 1 cut(s) 117
NsiI ATGCAT 1 cut(s) 814
PctI GAATGC 2 cut(s) 604, 812
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 72, 608
PflMI CCANNNNNTGG 1 cut(s) 932
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PshBI ATTAAT 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 1 cut(s) 793
PspPI GGNCC 1 cut(s) 343
PstNI CAGNNNCTG 1 cut(s) 31
PsuI RGATCY 1 cut(s) 791
SaqAI TTAA 2 cut(s) 399, 882
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 777, 791
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 2 cut(s) 217, 294
SduI GDGCHC 2 cut(s) 667, 721
SetI ASST 7 cut(s) 30, 580, 607, 642, 915, 951, 966
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 2 cut(s) 387, 835
SpeI ACTAGT 2 cut(s) 145, 233
Sse9I AATT 7 cut(s) 211, 331, 355, 400, 742, 781, 907
SsiI CCGC 4 cut(s) 46, 76, 161, 183
SspMI CTAG 3 cut(s) 146, 234, 788
StyD4I CCNGG 2 cut(s) 215, 292
StyI CCWWGG 1 cut(s) 851
TaaI ACNGT 6 cut(s) 10, 117, 225, 328, 662, 978
TasI AATT 7 cut(s) 211, 331, 355, 400, 742, 781, 907
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 72, 608
Tru1I TTAA 2 cut(s) 399, 882
Tru9I TTAA 2 cut(s) 399, 882
TscAI CASTG 4 cut(s) 309, 333, 499, 933
TseFI GTSAC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 117
TspDTI ATGAA 3 cut(s) 222, 460, 805
TspRI CASTG 4 cut(s) 309, 333, 499, 933
Van91I CCANNNNNTGG 1 cut(s) 932
VspI ATTAAT 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 968
XapI RAATTY 3 cut(s) 211, 331, 355
XmiI GTMKAC 1 cut(s) 258
XmnI GAANNNNTTC 1 cut(s) 359
XspI CTAG 3 cut(s) 146, 234, 788
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.