Rh4CG364400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016110
Physical Location & Seq
Forward (+)
62052718 .. 62054363
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG364400.1

Sequence Viewer

Length: 1014 bp
ATGCCGTTTTTCCATTCCCCAGAAACACAGATGGCCACCGTTACTACGACATCTCAGCTTCTGCTCTGCACCAACCGCGCCATTTTCGCAACCCGAACCCGATTCCGCAAACCCGACCCTGTAGCATTGGAAGCCCAAAAATGGTCTTCACAGTCACTCAGGGTCTCAAAGTTGAAGCCACTAGTTGTGTGCCACGCGGCGCGTCGGAAACCCACCACCGCTATCCAACCGGAGACTGAAAATGAAAATTCCCGGCTACTGTTTCAGACTAGTCTCTGGGTTGCTGAAGCAGTCTACATTCTGTGGCTGTTTCTTCTTCCTTACGCTCCTGGAGACCCAGTGTGGGCTATAAGTTCAGATACAGTGAATTCTCTTCTGGGCCTCTCTTTGAACTTCTTCTTTGTCTTGCCTCTTTTCAACTCTGTTGGTATTAATTTTATTGATGCCCCAGTTCTTCACCCGATGTCTGAAGGGCTATTCAACTTTGTGATTGGGTGGACATTCATGTTTGCTCCTTTGCTTTTCACTGATGGGAAGAGGGACAGATACAAAGGGTCTCTTGATGTCTTATGGGGCTTTCAGATGTTCCTTACAAATACATTTTTGATACCGTACATGGCTATTCGGCTGAATGCACCTGAATCAGACTGCACTCCCAGCAAGCGCTCACAGCTTGGGGATGTGATGACCAACGGTGCTCCCATTGTTGGACTTGTTGGTGGAGGGATATGTCTGATATCTGCATTATGGGCACTTTATGGCCGAATGGACAGCAATTTCGGTGGCATTTCTGAGCGATGGGAGTTCTTGATCAATTATCTAGGATCCGAGAGGCTGGCTTATGCATTCATTTGGGATATAGTTCTCTATAGCGTCTTTCAGCCTTGGTTGATAGGCGATAATCTTCAAAATGTTAAGAGCGATAAGATTGGTATTGTAAATTACCTTAGATTTGTGCCAGTGATTGGCTTAGTTGCTTACCTTCTTTGTTTGAACCTTGATGAGGAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

337

Amino Acids

37.99

Weight (kDa)

6.32

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25805
fragaria_vesca FvH4_4g27661 FvH4_4g27661
malus_domestica MD13G1044100.v1.1
prunus_persica Prupe.1G308400_v2.0.a1
pyrus_communis pycom13g03870
rosa_chinensis RchiOBHm_Chr4g0435511
rosa_laevigata RLG00000006586
rosa_multiflora Rmu_sc0001940.1_g000030
rosa_roxburghii Rroxscaffold_5G00376740
rosa_rugosa Rorug04G0285800
rosa_samantha Rh4BG349700 Rh4CG364400 Rh4DG344000
rosa_wichuraiana Rw4G029790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 965
AccI GTMKAC 1 cut(s) 294
AccII CGCG 3 cut(s) 78, 197, 202
AciI CCGC 4 cut(s) 76, 106, 197, 219
AclWI GGATC 2 cut(s) 819, 832
AcoI YGGCCR 2 cut(s) 33, 760
AcsI RAATTY 2 cut(s) 247, 367
AcuI CTGAAG 2 cut(s) 306, 489
AfaI GTAC 1 cut(s) 614
AfeI AGCGCT 1 cut(s) 665
AfiI CCNNNNNNNGG 5 cut(s) 141, 343, 707, 965, 1003
AgsI TTSAA 6 cut(s) 175, 391, 418, 481, 908, 994
AhlI ACTAGT 2 cut(s) 181, 269
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 58, 673
AluI AGCT 2 cut(s) 58, 673
Alw21I GWGCWC 1 cut(s) 700
Alw26I GTCTC 5 cut(s) 169, 227, 278, 327, 561
AlwI GGATC 2 cut(s) 819, 832
AlwNI CAGNNNCTG 1 cut(s) 61
Aor51HI AGCGCT 1 cut(s) 665
AoxI GGCC 3 cut(s) 33, 379, 760
ApoI RAATTY 2 cut(s) 247, 367
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 395
AspLEI GCGC 3 cut(s) 80, 202, 666
AspS9I GGNCC 1 cut(s) 379
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 754
BalI TGGCCA 1 cut(s) 35
BamHI GGATCC 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 700
BccI CCATC 3 cut(s) 25, 524, 792
BciT130I CCWGG 1 cut(s) 330
BclI TGATCA 1 cut(s) 810
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 5 cut(s) 169, 227, 278, 327, 561
BcuI ACTAGT 2 cut(s) 181, 269
BfaI CTAG 3 cut(s) 182, 270, 821
BfmI CTRYAG 2 cut(s) 120, 868
BfoI RGCGCY 1 cut(s) 667
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 2 cut(s) 253, 330
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 826
BmrFI CCNGG 2 cut(s) 253, 330
BmrI ACTGGG 2 cut(s) 332, 443
BmsI GCATC 1 cut(s) 433
BmuI ACTGGG 2 cut(s) 332, 443
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 253
BsaI GGTCTC 3 cut(s) 169, 327, 561
BsaJI CCNNGG 1 cut(s) 884
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 343, 707, 965, 1003
Bse1I ACTGG 3 cut(s) 338, 449, 959
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 884
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 5 cut(s) 141, 343, 707, 965, 1003
BseMII CTCAG 3 cut(s) 68, 172, 783
BseNI ACTGG 3 cut(s) 338, 449, 959
BseSI GKGCMC 1 cut(s) 754
BseYI CCCAGC 1 cut(s) 656
BsgI GTGCAG 2 cut(s) 52, 634
Bsh1236I CGCG 3 cut(s) 78, 197, 202
BshFI GGCC 3 cut(s) 35, 381, 762
BsiHKAI GWGCWC 1 cut(s) 700
BsiSI CCGG 2 cut(s) 230, 253
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 5 cut(s) 141, 343, 707, 965, 1003
BsmAI GTCTC 5 cut(s) 169, 227, 278, 327, 561
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 2 cut(s) 637, 845
BsnI GGCC 3 cut(s) 35, 381, 762
Bso31I GGTCTC 3 cut(s) 169, 327, 561
Bsp1286I GDGCHC 2 cut(s) 700, 754
Bsp143I GATC 2 cut(s) 810, 824
BspACI CCGC 4 cut(s) 76, 106, 197, 219
BspANI GGCC 3 cut(s) 35, 381, 762
BspCNI CTCAG 3 cut(s) 67, 171, 784
BspFNI CGCG 3 cut(s) 78, 197, 202
BspLI GGNNCC 1 cut(s) 826
BspPI GGATC 2 cut(s) 819, 832
BspTNI GGTCTC 3 cut(s) 169, 327, 561
BsrI ACTGG 3 cut(s) 338, 449, 959
BssECI CCNNGG 1 cut(s) 884
BssMI GATC 2 cut(s) 810, 824
BssT1I CCWWGG 1 cut(s) 884
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 7 cut(s) 40, 153, 261, 364, 612, 695, 1011
Bst6I CTCTTC 2 cut(s) 378, 530
BstC8I GCNNGC 2 cut(s) 662, 837
BstDEI CTNAG 5 cut(s) 54, 158, 792, 947, 970
BstENI CCTNNNNNAGG 1 cut(s) 1001
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 3 cut(s) 78, 197, 202
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 3 cut(s) 80, 202, 666
BstKTI GATC 2 cut(s) 813, 827
BstMAI GTCTC 5 cut(s) 169, 227, 278, 327, 561
BstMBI GATC 2 cut(s) 810, 824
BstMWI GCNNNNNNNGC 6 cut(s) 75, 86, 131, 657, 670, 749
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 2 cut(s) 251, 328
BstSFI CTRYAG 2 cut(s) 120, 868
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 3 cut(s) 78, 197, 202
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
BsuRI GGCC 3 cut(s) 35, 381, 762
BtgZI GCGATG 1 cut(s) 811
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 4 cut(s) 345, 369, 525, 966
Cac8I GCNNGC 2 cut(s) 662, 837
CaiI CAGNNNCTG 1 cut(s) 61
CfoI GCGC 3 cut(s) 80, 202, 666
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 2 cut(s) 191, 862
Csp6I GTAC 1 cut(s) 613
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 2 cut(s) 505, 616
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 5 cut(s) 54, 158, 792, 947, 970
DpnI GATC 2 cut(s) 812, 826
DpnII GATC 2 cut(s) 810, 824
EaeI YGGCCR 2 cut(s) 33, 760
Eam1104I CTCTTC 2 cut(s) 378, 530
EarI CTCTTC 2 cut(s) 378, 530
Eco130I CCWWGG 1 cut(s) 884
Eco31I GGTCTC 3 cut(s) 169, 327, 561
Eco32I GATATC 1 cut(s) 738
Eco47III AGCGCT 1 cut(s) 665
Eco57I CTGAAG 2 cut(s) 306, 489
EcoNI CCTNNNNNAGG 1 cut(s) 1001
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 328
EcoRV GATATC 1 cut(s) 738
EcoT14I CCWWGG 1 cut(s) 884
EcoT22I ATGCAT 1 cut(s) 847
ErhI CCWWGG 1 cut(s) 884
FaeI CATG 2 cut(s) 508, 619
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FaqI GGGAC 1 cut(s) 554
FatI CATG 2 cut(s) 504, 615
FbaI TGATCA 1 cut(s) 810
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 692
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 3 cut(s) 182, 270, 821
GlaI GCGC 3 cut(s) 79, 201, 665
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 660
GsuI CTGGAG 1 cut(s) 351
HaeII RGCGCY 1 cut(s) 667
HaeIII GGCC 3 cut(s) 35, 381, 762
HapII CCGG 2 cut(s) 230, 253
HgaI GACGC 2 cut(s) 191, 862
HhaI GCGC 3 cut(s) 80, 202, 666
Hin1II CATG 2 cut(s) 508, 619
Hin6I GCGC 3 cut(s) 78, 200, 664
HinP1I GCGC 3 cut(s) 78, 200, 664
HinfI GANTC 2 cut(s) 102, 641
HpaII CCGG 2 cut(s) 230, 253
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 295, 498
Hpy188I TCNGA 9 cut(s) 207, 267, 358, 469, 582, 646, 735, 793, 829
Hpy188III TCNNGA 2 cut(s) 560, 808
Hpy8I GTNNAC 2 cut(s) 295, 498
Hpy99I CGWCG 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 464, 992
HpyCH4III ACNGT 7 cut(s) 40, 153, 261, 364, 612, 695, 1011
HpyCH4V TGCA 5 cut(s) 69, 635, 651, 743, 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 86, 131, 657, 670, 749
HpyF3I CTNAG 5 cut(s) 54, 158, 792, 947, 970
Hsp92II CATG 2 cut(s) 508, 619
HspAI GCGC 3 cut(s) 78, 200, 664
Ksp22I TGATCA 1 cut(s) 810
Kzo9I GATC 2 cut(s) 810, 824
LmnI GCTCC 3 cut(s) 331, 517, 703
LweI GCATC 1 cut(s) 433
MaeI CTAG 3 cut(s) 182, 270, 821
MaeIII GTNAC 2 cut(s) 40, 153
MalI GATC 2 cut(s) 812, 826
MboI GATC 2 cut(s) 810, 824
MboII GAAGA 8 cut(s) 138, 305, 308, 365, 388, 446, 547, 896
MflI RGATCY 1 cut(s) 824
MhlI GDGCHC 2 cut(s) 700, 754
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 6 cut(s) 247, 367, 433, 775, 814, 940
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 3 cut(s) 185, 250, 688
MnlI CCTC 6 cut(s) 392, 420, 531, 716, 825, 997
Mox20I TGGCCA 1 cut(s) 35
Mph1103I ATGCAT 1 cut(s) 847
MroXI GAANNNNTTC 1 cut(s) 395
MscI TGGCCA 1 cut(s) 35
MseI TTAA 2 cut(s) 432, 915
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 2 cut(s) 230, 253
MspR9I CCNGG 2 cut(s) 253, 330
Mva1269I GAATGC 2 cut(s) 637, 845
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 3 cut(s) 78, 197, 202
MwoI GCNNNNNNNGC 6 cut(s) 75, 86, 131, 657, 670, 749
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 810, 824
NlaIII CATG 2 cut(s) 508, 619
NlaIV GGNNCC 1 cut(s) 826
NmuCI GTSAC 1 cut(s) 153
NsiI ATGCAT 1 cut(s) 847
PctI GAATGC 2 cut(s) 637, 845
PdmI GAANNNNTTC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 102, 641
PflMI CCANNNNNTGG 1 cut(s) 965
PfoI TCCNGGA 1 cut(s) 328
PkrI GCNGC 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 328
PspFI CCCAGC 1 cut(s) 656
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 826
PspPI GGNCC 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 824
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
SaqAI TTAA 2 cut(s) 432, 915
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 810, 824
Sau96I GGNCC 1 cut(s) 379
ScrFI CCNGG 2 cut(s) 253, 330
SduI GDGCHC 2 cut(s) 700, 754
SetI ASST 6 cut(s) 60, 640, 675, 948, 984, 999
SfaNI GCATC 1 cut(s) 433
SfcI CTRYAG 2 cut(s) 120, 868
SpeI ACTAGT 2 cut(s) 181, 269
Sse9I AATT 6 cut(s) 247, 367, 433, 775, 814, 940
SsiI CCGC 4 cut(s) 76, 106, 197, 219
SspMI CTAG 3 cut(s) 182, 270, 821
StyD4I CCNGG 2 cut(s) 251, 328
StyI CCWWGG 1 cut(s) 884
TaaI ACNGT 7 cut(s) 40, 153, 261, 364, 612, 695, 1011
TasI AATT 6 cut(s) 247, 367, 433, 775, 814, 940
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 2 cut(s) 102, 641
Tru1I TTAA 2 cut(s) 432, 915
Tru9I TTAA 2 cut(s) 432, 915
TscAI CASTG 4 cut(s) 345, 369, 532, 966
TseFI GTSAC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 258, 493, 838
TspRI CASTG 4 cut(s) 345, 369, 532, 966
Van91I CCANNNNNTGG 1 cut(s) 965
VspI ATTAAT 1 cut(s) 432
XagI CCTNNNNNAGG 1 cut(s) 1001
XapI RAATTY 2 cut(s) 247, 367
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 395
XspI CTAG 3 cut(s) 182, 270, 821
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.