AT3G25905

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014327
Physical Location & Seq
Reverse (-)
9486168 .. 9486924
757 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25905.1

Sequence Viewer

Length: 276 bp
ATGACTCATGCTCGAGAATGGAGAAGCTCTTTGACTACTACACTTCTAATGGTGATCTTGCTTTCTTATATGCTCCATCTCTTCTGTGTATATTCACGGGTAGGGGCAATTCGGATATTTCCAGAAACTCCGGCTTCGGGTAAGAGACAAGAAGAAGATCTAATGAAGAAGTACTTCGGCGCCGGGAAATTTCCACCGGTGGATTCTTTTGTCGGTAAAGGGATCAGTGAGAGTAAAAGAATAGTACCAAGTTGTCCGGATCCTTTGCATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.29

Weight (kDa)

9.34

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccIII TCCGGA 1 cut(s) 256
AclWI GGATC 3 cut(s) 230, 254, 267
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 173, 246
AfiI CCNNNNNNNGG 1 cut(s) 137
AgeI ACCGGT 1 cut(s) 196
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 3 cut(s) 230, 254, 267
Ama87I CYCGRG 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 256
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 12
BamHI GGATCC 1 cut(s) 259
BanI GGYRCC 1 cut(s) 179
BccI CCATC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 183
BglII AGATCT 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 184
BmeT110I CYCGRG 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 181, 261
BmrFI CCNGG 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 180
BsaWI WCCGGW 2 cut(s) 196, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 179
BshTI ACCGGT 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 4 cut(s) 131, 183, 197, 257
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 12
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 4 cut(s) 54, 157, 222, 259
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 181, 261
BspPI GGATC 3 cut(s) 230, 254, 267
BspT107I GGYRCC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 4 cut(s) 54, 157, 222, 259
BssNI GRCGYC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 4 cut(s) 57, 160, 225, 262
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 4 cut(s) 54, 157, 222, 259
BstSCI CCNGG 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 157, 259
BstYI RGATCY 2 cut(s) 157, 259
BtsIMutI CAGTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 196
Csp6I GTAC 2 cut(s) 172, 245
CspAI ACCGGT 1 cut(s) 196
CviAII CATG 1 cut(s) 8
CviJI RGCY 2 cut(s) 27, 134
CviKI_1 RGCY 2 cut(s) 27, 134
CviQI GTAC 2 cut(s) 172, 245
DinI GGCGCC 1 cut(s) 181
DpnI GATC 4 cut(s) 56, 159, 224, 261
DpnII GATC 4 cut(s) 54, 157, 222, 259
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 12
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaeI CATG 1 cut(s) 11
FaiI YATR 5 cut(s) 9, 69, 71, 91, 270
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 274
GlaI GCGC 1 cut(s) 181
HaeII RGCGCY 1 cut(s) 183
HapII CCGG 4 cut(s) 131, 183, 197, 257
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 1 cut(s) 11
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 2 cut(s) 4, 203
HpaII CCGG 4 cut(s) 131, 183, 197, 257
HphI GGTGA 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 114
Hpy188III TCNNGA 3 cut(s) 14, 122, 257
HpyCH4V TGCA 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 1 cut(s) 11
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 54, 157, 222, 259
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 135, 144, 196, 210, 270
MaeI CTAG 1 cut(s) 274
MalI GATC 4 cut(s) 56, 159, 224, 261
MboI GATC 4 cut(s) 54, 157, 222, 259
MboII GAAGA 4 cut(s) 73, 164, 167, 178
MflI RGATCY 2 cut(s) 157, 259
MluCI AATT 2 cut(s) 108, 188
Mly113I GGCGCC 1 cut(s) 180
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 173
MspI CCGG 4 cut(s) 131, 183, 197, 257
MspR9I CCNGG 1 cut(s) 184
NarI GGCGCC 1 cut(s) 180
NciI CCSGG 1 cut(s) 184
NdeII GATC 4 cut(s) 54, 157, 222, 259
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 2 cut(s) 181, 261
PaeR7I CTCGAG 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 173
PfeI GAWTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 196
PluTI GGCGCC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 181, 261
PsuI RGATCY 2 cut(s) 157, 259
RsaI GTAC 2 cut(s) 173, 246
RsaNI GTAC 2 cut(s) 172, 245
Sau3AI GATC 4 cut(s) 54, 157, 222, 259
ScaI AGTACT 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 184
SetI ASST 1 cut(s) 29
SfoI GGCGCC 1 cut(s) 181
Sfr274I CTCGAG 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 108, 188
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 182
TaqI TCGA 1 cut(s) 13
TasI AATT 2 cut(s) 108, 188
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 188
XhoI CTCGAG 1 cut(s) 12
XmnI GAANNNNTTC 1 cut(s) 173
XspI CTAG 1 cut(s) 274
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.