RLG00000006612

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014327
Physical Location & Seq
Reverse (-)
9017095 .. 9021425
4331 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006612

Sequence Viewer

Length: 555 bp
ATGTTGGAGCTCCTGACTGGGAAGAGTGGTGCTCGGGCCGGTCCAGCATTGGATTGTTGTAGGATAGGGAAGGCGCATCGAGCCGAGCGGATGGTGGAAGGGTCTACGGAGGTGAGTGCGGACAGGCTGGCGGAGGAGTGCCAGACCTGGGGATCTGATGTTGGTGGCGGAGTGGCAGGACTGGTGAGGATGCGTTGGTGCAGCTCAAAGCGGCTGCTCGAACCAGGTCGTGATGGCGGCCATATTCCCTCTCCCGGGTTAACTCCTAAACTTGGGCTTGGGGATACAATTAGGAAGAGACTTCCGCAGGTGGCGGTGGCGAGGCTGGTGGTTGGTGGCTATGTGACTGGAGACATGATTCGTTGCGAGGCTGCGGCGGAAGTGTCGAAGATTCTGGCAGCGGTTGTATGGCATCAAAATCTTCACTTATTGGAGCTGCGGAGAAATACGATGGGTACAAGTCTCAATGGATCAAACTTGGAACAAATTTGGATATTATTGCTTCTGTTTATAGTTGTCACCAAACTGATGATAGTACTGACGATGGATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.9

Weight (kDa)

8.95

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 298
Acc36I ACCTGC 1 cut(s) 298
AccBSI CCGCTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 104
AclWI GGATC 2 cut(s) 160, 478
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 486
AfaI GTAC 2 cut(s) 457, 537
AfiI CCNNNNNNNGG 4 cut(s) 148, 254, 255, 272
AjnI CCWGG 2 cut(s) 146, 223
AluBI AGCT 3 cut(s) 10, 204, 436
AluI AGCT 3 cut(s) 10, 204, 436
Alw21I GWGCWC 2 cut(s) 12, 34
Alw26I GTCTC 3 cut(s) 292, 345, 467
AlwI GGATC 2 cut(s) 160, 478
Ama87I CYCGRG 2 cut(s) 33, 254
AoxI GGCC 2 cut(s) 36, 238
ApeKI GCWGC 5 cut(s) 201, 214, 371, 398, 436
ApoI RAATTY 1 cut(s) 486
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 2 cut(s) 36, 41
AsuC2I CCSGG 2 cut(s) 255, 256
AsuHPI GGTGA 3 cut(s) 124, 196, 511
AvaI CYCGRG 2 cut(s) 33, 254
AvaII GGWCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 12, 34
BbvI GCAGC 5 cut(s) 201, 213, 358, 410, 423
BccI CCATC 4 cut(s) 85, 227, 445, 538
BciT130I CCWGG 2 cut(s) 148, 225
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 2 cut(s) 255, 256
BcoDI GTCTC 3 cut(s) 292, 345, 467
BfuAI ACCTGC 1 cut(s) 298
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 8 cut(s) 202, 212, 215, 238, 372, 375, 399, 437
BlsI GCNGC 8 cut(s) 203, 213, 216, 239, 373, 376, 400, 438
BmcAI AGTACT 1 cut(s) 537
Bme1390I CCNGG 4 cut(s) 148, 225, 255, 256
Bme18I GGWCC 1 cut(s) 41
BmeT110I CYCGRG 2 cut(s) 33, 254
BmgT120I GGNCC 2 cut(s) 36, 41
BmrFI CCNGG 4 cut(s) 148, 225, 255, 256
BmrI ACTGGG 1 cut(s) 27
BmsI GCATC 3 cut(s) 85, 180, 421
BmuI ACTGGG 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpmI CTGGAG 1 cut(s) 369
BpuMI CCSGG 2 cut(s) 255, 256
BsaJI CCNNGG 2 cut(s) 147, 254
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 254, 255, 272
Bse118I RCCGGY 1 cut(s) 38
Bse1I ACTGG 3 cut(s) 22, 186, 352
BseBI CCWGG 2 cut(s) 148, 225
BseDI CCNNGG 2 cut(s) 147, 254
BseGI GGATG 2 cut(s) 96, 195
BseLI CCNNNNNNNGG 4 cut(s) 148, 254, 255, 272
BseNI ACTGG 3 cut(s) 22, 186, 352
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 5 cut(s) 201, 213, 358, 410, 423
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 2 cut(s) 38, 240
BsiHKAI GWGCWC 2 cut(s) 12, 34
BsiHKCI CYCGRG 2 cut(s) 33, 254
BsiSI CCGG 2 cut(s) 39, 255
BslI CCNNNNNNNGG 4 cut(s) 148, 254, 255, 272
BsmAI GTCTC 3 cut(s) 292, 345, 467
BsnI GGCC 2 cut(s) 38, 240
BsoBI CYCGRG 2 cut(s) 33, 254
Bsp1286I GDGCHC 2 cut(s) 12, 34
Bsp143I GATC 2 cut(s) 152, 470
BspANI GGCC 2 cut(s) 38, 240
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 2 cut(s) 160, 478
BsrBI CCGCTC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 38
BsrI ACTGG 3 cut(s) 22, 186, 352
BssAI RCCGGY 1 cut(s) 38
BssECI CCNNGG 2 cut(s) 147, 254
BssMI GATC 2 cut(s) 152, 470
Bst2UI CCWGG 2 cut(s) 148, 225
Bst6I CTCTTC 2 cut(s) 17, 290
BstC8I GCNNGC 1 cut(s) 129
BstF5I GGATG 2 cut(s) 96, 195
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 2 cut(s) 155, 473
BstMAI GTCTC 3 cut(s) 292, 345, 467
BstMBI GATC 2 cut(s) 152, 470
BstMWI GCNNNNNNNGC 2 cut(s) 44, 80
BstNI CCWGG 2 cut(s) 148, 225
BstSCI CCNGG 4 cut(s) 146, 223, 253, 254
BstV1I GCAGC 5 cut(s) 201, 213, 358, 410, 423
BstX2I RGATCY 1 cut(s) 152
BstYI RGATCY 1 cut(s) 152
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 38, 240
BtsCI GGATG 2 cut(s) 96, 195
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 38
Cfr13I GGNCC 2 cut(s) 36, 41
Cfr9I CCCGGG 1 cut(s) 254
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 2 cut(s) 456, 536
CviAII CATG 1 cut(s) 355
CviQI GTAC 2 cut(s) 456, 536
DpnI GATC 2 cut(s) 154, 472
DpnII GATC 2 cut(s) 152, 470
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 17, 290
EarI CTCTTC 2 cut(s) 17, 290
EciI GGCGGA 3 cut(s) 146, 183, 392
Ecl136II GAGCTC 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 10
Eco88I CYCGRG 2 cut(s) 33, 254
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 146, 223
EcoT38I GRGCYC 1 cut(s) 12
FaeI CATG 1 cut(s) 358
FaiI YATR 6 cut(s) 243, 342, 356, 409, 512, 551
FatI CATG 1 cut(s) 354
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 8 cut(s) 202, 212, 215, 238, 372, 375, 399, 437
FokI GGATG 2 cut(s) 103, 202
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 8 cut(s) 202, 212, 215, 238, 372, 375, 399, 437
GlaI GCGC 1 cut(s) 75
GluI GCNGC 8 cut(s) 202, 212, 215, 238, 372, 375, 399, 437
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 2 cut(s) 38, 240
HapII CCGG 2 cut(s) 39, 255
HhaI GCGC 1 cut(s) 76
Hin1II CATG 1 cut(s) 358
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HinfI GANTC 2 cut(s) 358, 391
HpaI GTTAAC 1 cut(s) 261
HpaII CCGG 2 cut(s) 39, 255
HphI GGTGA 3 cut(s) 124, 196, 511
Hpy166II GTNNAC 2 cut(s) 105, 261
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 13, 230
Hpy8I GTNNAC 2 cut(s) 105, 261
HpyAV CCTTC 2 cut(s) 64, 92
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 80
Hsp92II CATG 1 cut(s) 358
HspAI GCGC 1 cut(s) 74
KspAI GTTAAC 1 cut(s) 261
Kzo9I GATC 2 cut(s) 152, 470
LmnI GCTCC 3 cut(s) 7, 15, 433
Lsp1109I GCAGC 5 cut(s) 201, 213, 358, 410, 423
LweI GCATC 3 cut(s) 85, 180, 421
MabI ACCWGGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 343, 517
MalI GATC 2 cut(s) 154, 472
MbiI CCGCTC 1 cut(s) 88
MboI GATC 2 cut(s) 152, 470
MboII GAAGA 4 cut(s) 34, 307, 400, 413
MflI RGATCY 1 cut(s) 152
MhlI GDGCHC 2 cut(s) 12, 34
MluCI AATT 2 cut(s) 288, 486
MnlI CCTC 6 cut(s) 103, 127, 180, 259, 315, 361
MseI TTAA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 39, 255
MspR9I CCNGG 4 cut(s) 148, 225, 255, 256
MvaI CCWGG 2 cut(s) 148, 225
MwoI GCNNNNNNNGC 2 cut(s) 44, 80
NciI CCSGG 2 cut(s) 255, 256
NdeII GATC 2 cut(s) 152, 470
NlaIII CATG 1 cut(s) 358
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 343, 517
PaqCI CACCTGC 1 cut(s) 298
PfeI GAWTC 2 cut(s) 358, 391
PkrI GCNGC 8 cut(s) 203, 213, 216, 239, 373, 376, 400, 438
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 146, 223
PspGI CCWGG 2 cut(s) 146, 223
PspPI GGNCC 2 cut(s) 36, 41
PsuI RGATCY 1 cut(s) 152
RsaI GTAC 2 cut(s) 457, 537
RsaNI GTAC 2 cut(s) 456, 536
SacI GAGCTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 8 cut(s) 202, 212, 215, 238, 372, 375, 399, 437
Sau3AI GATC 2 cut(s) 152, 470
Sau96I GGNCC 2 cut(s) 36, 41
ScaI AGTACT 1 cut(s) 537
ScrFI CCNGG 4 cut(s) 148, 225, 255, 256
SduI GDGCHC 2 cut(s) 12, 34
SetI ASST 7 cut(s) 12, 114, 149, 206, 229, 312, 438
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 3 cut(s) 85, 180, 421
SinI GGWCC 1 cut(s) 41
SmaI CCCGGG 1 cut(s) 256
Sse9I AATT 2 cut(s) 288, 486
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 4 cut(s) 146, 223, 253, 254
TaqI TCGA 3 cut(s) 79, 219, 386
TasI AATT 2 cut(s) 288, 486
TatI WGTACW 1 cut(s) 535
TauI GCSGC 3 cut(s) 214, 240, 377
TfiI GAWTC 2 cut(s) 358, 391
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseFI GTSAC 2 cut(s) 343, 517
TseI GCWGC 5 cut(s) 201, 214, 371, 398, 436
Tsp45I GTSAC 2 cut(s) 343, 517
TspGWI ACGGA 1 cut(s) 122
TspMI CCCGGG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 41
XapI RAATTY 1 cut(s) 486
XmaI CCCGGG 1 cut(s) 254
XmiI GTMKAC 1 cut(s) 104
ZrmI AGTACT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.