Rh4DG341000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014327
Physical Location & Seq
Forward (+)
56325647 .. 56330475
4829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG341000.1

Sequence Viewer

Length: 390 bp
ATGTCGTTCGCCGGCGGCAGCAGGAGGTGGCAGTTGCGGTATTCGTCTCTGGCGGTGGCGTTGACCGTGATGTCGGTTTTACAGATTTGGGTCTGCTCCGACGACCGTTCAAAGCGGCGGCTCGAACCAGGTCGTGATGGCGGCCATATTCCCTCTCCCGGGTTAACTCTTAAACTTGGGTTTGGGGATACAATTGGGAAGAGCCTTCCGCAGGTGGCGGTGGCGAGGCTGGTGGTTGGTGGCTATGTGACTGGAGAGATGATTCGCTGCAAGGCTGCGACAGAGTTGTTACAGATTCTGGCAGCGGTTGTACGGCATCAGAATCTTCACTTATTGGAGCTGCGGAGAAATATGACGGGTACAAGTCTCAATGGATCAAACTTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.04

Weight (kDa)

10.26

Isoelectric Point (pI)

60.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 142
AfaI GTAC 2 cut(s) 312, 361
AfiI CCNNNNNNNGG 3 cut(s) 158, 159, 211
AgsI TTSAA 1 cut(s) 111
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 51, 371
AlwI GGATC 1 cut(s) 382
AlwNI CAGNNNCTG 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 158
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 5 cut(s) 18, 267, 275, 302, 340
AsuC2I CCSGG 2 cut(s) 159, 160
AvaI CYCGRG 1 cut(s) 158
BbvI GCAGC 5 cut(s) 30, 254, 262, 314, 327
BccI CCATC 1 cut(s) 131
BceAI ACGGC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 181
BcnI CCSGG 2 cut(s) 159, 160
BcoDI GTCTC 2 cut(s) 51, 371
BfuAI ACCTGC 1 cut(s) 202
BfuI GTATCC 1 cut(s) 181
BisI GCNGC 9 cut(s) 16, 19, 116, 119, 142, 268, 276, 303, 341
BlsI GCNGC 9 cut(s) 17, 20, 117, 120, 143, 269, 277, 304, 342
Bme1390I CCNGG 3 cut(s) 129, 159, 160
BmeT110I CYCGRG 1 cut(s) 158
BmrFI CCNGG 3 cut(s) 129, 159, 160
BmsI GCATC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 2 cut(s) 159, 160
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 159, 211
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 3 cut(s) 158, 159, 211
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 5 cut(s) 30, 254, 262, 314, 327
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 158
BsiSI CCGG 2 cut(s) 12, 159
BslI CCNNNNNNNGG 3 cut(s) 158, 159, 211
BsmAI GTCTC 2 cut(s) 51, 371
BsmBI CGTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 1 cut(s) 374
BspANI GGCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 382
BspQI GCTCTTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 158
BssMI GATC 1 cut(s) 374
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 67, 107
Bst6I CTCTTC 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 209
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 2 cut(s) 51, 371
BstMBI GATC 1 cut(s) 374
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 3 cut(s) 127, 157, 158
BstV1I GCAGC 5 cut(s) 30, 254, 262, 314, 327
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 144
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 11
Cfr9I CCCGGG 1 cut(s) 158
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 311, 360
CviJI RGCY 7 cut(s) 121, 144, 204, 229, 243, 275, 340
CviKI_1 RGCY 7 cut(s) 121, 144, 204, 229, 243, 275, 340
CviQI GTAC 2 cut(s) 311, 360
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 51
FaiI YATR 3 cut(s) 147, 246, 353
Fnu4HI GCNGC 9 cut(s) 16, 19, 116, 119, 142, 268, 276, 303, 341
Fsp4HI GCNGC 9 cut(s) 16, 19, 116, 119, 142, 268, 276, 303, 341
GluI GCNGC 9 cut(s) 16, 19, 116, 119, 142, 268, 276, 303, 341
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 144
HapII CCGG 2 cut(s) 12, 159
HincII GTYRAC 2 cut(s) 63, 165
HindII GTYRAC 2 cut(s) 63, 165
HinfI GANTC 3 cut(s) 262, 295, 322
HpaI GTTAAC 1 cut(s) 165
HpaII CCGG 2 cut(s) 12, 159
Hpy166II GTNNAC 2 cut(s) 63, 165
Hpy188I TCNGA 2 cut(s) 100, 321
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 63, 165
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 215
HpyCH4III ACNGT 2 cut(s) 67, 107
HpyCH4V TGCA 1 cut(s) 270
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
KspAI GTTAAC 1 cut(s) 165
Kzo9I GATC 1 cut(s) 374
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 101, 337
Lsp1109I GCAGC 5 cut(s) 30, 254, 262, 314, 327
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 247, 288
MalI GATC 1 cut(s) 376
MboI GATC 1 cut(s) 374
MboII GAAGA 2 cut(s) 211, 317
MfeI CAATTG 1 cut(s) 192
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 18, 163, 219
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 2 cut(s) 164, 171
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 12, 159
MspR9I CCNGG 3 cut(s) 129, 159, 160
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 129
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 159, 160
NdeII GATC 1 cut(s) 374
NgoMIV GCCGGC 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 3 cut(s) 262, 295, 322
PkrI GCNGC 9 cut(s) 17, 20, 117, 120, 143, 269, 277, 304, 342
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 298
RsaI GTAC 2 cut(s) 312, 361
RsaNI GTAC 2 cut(s) 311, 360
SapI GCTCTTC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 164, 171
SatI GCNGC 9 cut(s) 16, 19, 116, 119, 142, 268, 276, 303, 341
Sau3AI GATC 1 cut(s) 374
ScrFI CCNGG 3 cut(s) 129, 159, 160
SetI ASST 4 cut(s) 29, 133, 216, 342
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 11
SmaI CCCGGG 1 cut(s) 160
Sse9I AATT 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 127, 157, 158
TaaI ACNGT 2 cut(s) 67, 107
TaqI TCGA 1 cut(s) 123
TasI AATT 1 cut(s) 192
TauI GCSGC 4 cut(s) 18, 118, 121, 144
TfiI GAWTC 3 cut(s) 262, 295, 322
Tru1I TTAA 2 cut(s) 164, 171
Tru9I TTAA 2 cut(s) 164, 171
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 5 cut(s) 18, 267, 275, 302, 340
Tsp45I GTSAC 1 cut(s) 247
TspMI CCCGGG 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.