Rroxscaffold_5G00376390

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014327
Physical Location & Seq
Forward (+)
57105273 .. 57105617
345 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00376390.1

Sequence Viewer

Length: 345 bp
ATGTCGTTCGCCGGCGGTAGCAGGAGATGGCAGTTGCGGTATTCGTCTCTGGCGGTGGCGTTGATCGTGATGTCGGTTTTACAGATTTGGGTCTGCTCCGACGACCGGTACTGCAAAGCAGGGGCAATTCGGGTACTTCCACCACCAGGAAATGTAAATCATCATCCTCATGTAACATCACAGCACCTAGAAGAACATGAAAAGAAGAAGAAGGCTAGTAAAGAGGAGCTGTTTCGTAAGTTCTTCAGCGGAATATCATCGGCTTCAAAATTCAACAAAAGCGAAAAGGGATTCGAAGATAGCAAAAGAAGAGTGCCCAGTTGCCCAGATCCTCTCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.94

Weight (kDa)

9.72

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 15, 37, 53, 249
AclWI GGATC 1 cut(s) 323
AcsI RAATTY 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 229
AfaI GTAC 2 cut(s) 110, 135
AfiI CCNNNNNNNGG 2 cut(s) 105, 146
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 267, 274
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 51
AlwI GGATC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 269
AsiGI ACCGGT 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 318
BccI CCATC 1 cut(s) 21
BciT130I CCWGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 51
BfaI CTAG 3 cut(s) 188, 216, 343
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 312
BmuI ACTGGG 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 294
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 146
Bse118I RCCGGY 2 cut(s) 11, 105
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 2 cut(s) 105, 146
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 1 cut(s) 239
BseSI GKGCMC 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 12, 106
BslI CCNNNNNNNGG 2 cut(s) 105, 146
BsmAI GTCTC 1 cut(s) 51
BsmBI CGTCTC 1 cut(s) 51
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 63, 328
BspACI CCGC 4 cut(s) 15, 37, 53, 249
BspPI GGATC 1 cut(s) 323
BspT104I TTCGAA 1 cut(s) 294
BsrFI RCCGGY 2 cut(s) 11, 105
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 2 cut(s) 11, 105
BssMI GATC 2 cut(s) 63, 328
Bst2UI CCWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 66, 331
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 63, 328
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 2 cut(s) 11, 105
Csp6I GTAC 2 cut(s) 109, 134
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 2 cut(s) 170, 197
CviJI RGCY 3 cut(s) 215, 229, 263
CviKI_1 RGCY 3 cut(s) 215, 229, 263
CviQI GTAC 2 cut(s) 109, 134
DpnI GATC 2 cut(s) 65, 330
DpnII GATC 2 cut(s) 63, 328
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 2 cut(s) 173, 200
FaiI YATR 2 cut(s) 171, 198
FatI CATG 2 cut(s) 169, 196
FokI GGATG 1 cut(s) 150
FspBI CTAG 3 cut(s) 188, 216, 343
HapII CCGG 2 cut(s) 12, 106
Hin1II CATG 2 cut(s) 173, 200
HinfI GANTC 1 cut(s) 291
HpaII CCGG 2 cut(s) 12, 106
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 114
Hsp92II CATG 2 cut(s) 173, 200
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 2 cut(s) 63, 328
LmnI GCTCC 2 cut(s) 101, 226
LpnPI CCDG 9 cut(s) 7, 25, 35, 105, 119, 132, 159, 331, 339
MaeI CTAG 3 cut(s) 188, 216, 343
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 65, 330
MboI GATC 2 cut(s) 63, 328
MboII GAAGA 6 cut(s) 203, 217, 220, 235, 308, 321
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 2 cut(s) 126, 269
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 3 cut(s) 177, 217, 342
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 12, 106
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NaeI GCCGGC 1 cut(s) 13
NdeII GATC 2 cut(s) 63, 328
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 173, 200
NspV TTCGAA 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 2 cut(s) 110, 135
RsaNI GTAC 2 cut(s) 109, 134
RseI CAYNNNNRTG 1 cut(s) 168
Sau3AI GATC 2 cut(s) 63, 328
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 318
SetI ASST 2 cut(s) 189, 231
SfuI TTCGAA 1 cut(s) 294
SgrAI CRCCGGYG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 2 cut(s) 126, 269
SsiI CCGC 4 cut(s) 15, 37, 53, 249
SspMI CTAG 3 cut(s) 188, 216, 343
StyD4I CCNGG 1 cut(s) 145
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 126, 269
TfiI GAWTC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 213
XapI RAATTY 1 cut(s) 269
XspI CTAG 3 cut(s) 188, 216, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.