Prupe.1G311100_v2.0.a1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014327
Physical Location & Seq
Reverse (-)
30227331 .. 30228427
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G311100.1

Sequence Viewer

Length: 474 bp
ATGTCTATCGCCGGCGGCTGGAGGCTTTTGCACTCTTCTCTGGTGGTGATTTTGGTCATTTCTGTGTTACAGATTTGGGTCTGCTGTGACTGCAAAGCAGGCGCAATACGGGTTTTCCCAGGACACACAAATGCGTTATCAAAGGGGGAGGCAGAGAGCAGCAACACGATGCAGAGCAAGAGCAACAGAAGCAGAGAGGCCCTGTTCCATAAGTACTTCGGTGGCAGTGTCAGAGCTTCTAAATTCAACAAAACAGAGCAAGGGTATGAAGACAGCAAACGAAGAGTGCCCAGTTGCCCAGATCAACTCCACAACTATGTACAGAGAGAAGTTGAGAAATTTGGTTTTGCAGTGACCAGCTTATATTTTGTACTACCTGCTATAGCTAGAATCTCCGTATCTACAACTTTTCAAGATCCTCTCTTTCGTTTTTTAGCTTTTGCTTTTGGGATCAGAAGATCGAATATCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.61

Weight (kDa)

9.78

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
AciI CCGC 1 cut(s) 15
AclWI GGATC 2 cut(s) 410, 458
AcsI RAATTY 2 cut(s) 242, 338
AfaI GTAC 3 cut(s) 215, 321, 372
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 2 cut(s) 247, 413
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 4 cut(s) 236, 360, 386, 437
AluI AGCT 4 cut(s) 236, 360, 386, 437
AlwI GGATC 2 cut(s) 410, 458
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 2 cut(s) 242, 338
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 276
BbvI GCAGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 120
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 2 cut(s) 16, 160
BlsI GCNGC 2 cut(s) 17, 161
BmcAI AGTACT 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 291
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 301, 415, 450, 458
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 410, 458
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 291
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 4 cut(s) 301, 415, 450, 458
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 2 cut(s) 40, 277
BstAUI TGTACA 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 13, 100
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 4 cut(s) 304, 418, 453, 461
BstMBI GATC 4 cut(s) 301, 415, 450, 458
BstMWI GCNNNNNNNGC 3 cut(s) 90, 99, 189
BstNI CCWGG 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuRI GGCC 1 cut(s) 200
BtsI GCAGTG 2 cut(s) 232, 357
BtsIMutI CAGTG 2 cut(s) 232, 357
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 13, 100
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 199
Csp6I GTAC 3 cut(s) 214, 320, 371
CviJI RGCY 7 cut(s) 18, 25, 200, 236, 360, 386, 437
CviKI_1 RGCY 7 cut(s) 18, 25, 200, 236, 360, 386, 437
CviQI GTAC 3 cut(s) 214, 320, 371
DpnI GATC 4 cut(s) 303, 417, 452, 460
DpnII GATC 4 cut(s) 301, 415, 450, 458
Eam1104I CTCTTC 2 cut(s) 40, 277
EarI CTCTTC 2 cut(s) 40, 277
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 118
FaiI YATR 7 cut(s) 210, 267, 318, 364, 383, 470, 472
FauNDI CATATG 1 cut(s) 470
Fnu4HI GCNGC 2 cut(s) 16, 160
Fsp4HI GCNGC 2 cut(s) 16, 160
FspBI CTAG 1 cut(s) 387
GlaI GCGC 1 cut(s) 103
GluI GCNGC 2 cut(s) 16, 160
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 12
HhaI GCGC 1 cut(s) 104
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 1 cut(s) 390
HpaII CCGG 1 cut(s) 12
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 233, 455
Hpy188III TCNNGA 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 31, 93, 172, 350
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 99, 189
HspAI GCGC 1 cut(s) 102
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 301, 415, 450, 458
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 3 cut(s) 66, 86, 352
MalI GATC 4 cut(s) 303, 417, 452, 460
MboI GATC 4 cut(s) 301, 415, 450, 458
MboII GAAGA 4 cut(s) 27, 281, 294, 468
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 2 cut(s) 242, 338
MnlI CCTC 4 cut(s) 15, 142, 190, 429
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MslI CAYNNNNRTG 3 cut(s) 62, 129, 315
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 90, 99, 189
NaeI GCCGGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 470
NdeII GATC 4 cut(s) 301, 415, 450, 458
NgoMIV GCCGGC 1 cut(s) 11
NmuCI GTSAC 2 cut(s) 86, 352
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 390
PkrI GCNGC 2 cut(s) 17, 161
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 1 cut(s) 199
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 3 cut(s) 215, 321, 372
RsaNI GTAC 3 cut(s) 214, 320, 371
RseI CAYNNNNRTG 3 cut(s) 62, 129, 315
SatI GCNGC 2 cut(s) 16, 160
Sau3AI GATC 4 cut(s) 301, 415, 450, 458
Sau96I GGNCC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 238, 362, 379, 388, 439
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 381
SgrAI CRCCGGYG 1 cut(s) 11
SmiMI CAYNNNNRTG 3 cut(s) 62, 129, 315
Sse9I AATT 2 cut(s) 242, 338
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 118
TaqI TCGA 1 cut(s) 461
TasI AATT 2 cut(s) 242, 338
TatI WGTACW 3 cut(s) 213, 319, 370
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 390
TscAI CASTG 2 cut(s) 232, 357
TseFI GTSAC 2 cut(s) 86, 352
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 2 cut(s) 86, 352
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 385
TspRI CASTG 2 cut(s) 232, 357
XapI RAATTY 2 cut(s) 242, 338
XspI CTAG 1 cut(s) 387
ZrmI AGTACT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.