pycom13g03640

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014327
Physical Location & Seq
Forward (+)
2408131 .. 2408454
324 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03640.1

Sequence Viewer

Length: 324 bp
ATGTCGTTCGCCGGCGGCTGGAGGCTTCTGCATTCTTCCCTGGTGGTGATTCTGGTCGTTTCGGCGTTACAGATTTGGGTCTGCTGCGACTGCAAGGCAGGGGCAATACGGGTATTCCCGGGAAATACAGGTAATGTAATATCAAAGGTGCAGGTGGAAGCAGAGAGGAACATGATGCAGAAGAAGAGCAAGACAAGCACAGAAGCCCTATTCCATAAGTACATCGGCGGAAGCACTTCCAGTTCCAACTTCAACAAAACAGAAAAAGGGTATGAAGAATCCAAAAGAAGAGTGCCCAGTTGCCCAGATCAACTCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.82

Weight (kDa)

9.39

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 2 cut(s) 15, 228
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 18
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 235
AsuC2I CCSGG 2 cut(s) 119, 120
AsuHPI GGTGA 1 cut(s) 58
AvaI CYCGRG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 41
BcnI CCSGG 2 cut(s) 119, 120
BfaI CTAG 1 cut(s) 322
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 16, 85
BlsI GCNGC 2 cut(s) 17, 86
Bme1390I CCNGG 3 cut(s) 41, 119, 120
BmeT110I CYCGRG 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 41, 119, 120
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 291
BpmI CTGGAG 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 119, 120
BsaJI CCNNGG 2 cut(s) 39, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 240, 297
BseBI CCWGG 1 cut(s) 41
BseDI CCNNGG 2 cut(s) 39, 118
BseLI CCNNNNNNNGG 1 cut(s) 18
BseNI ACTGG 2 cut(s) 240, 297
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 2 cut(s) 12, 119
BslI CCNNNNNNNGG 1 cut(s) 18
BsmI GAATGC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 307
BspACI CCGC 2 cut(s) 15, 228
BspMI ACCTGC 1 cut(s) 142
BspQI GCTCTTC 1 cut(s) 179
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 240, 297
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 39, 118
BssMI GATC 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 41
Bst6I CTCTTC 2 cut(s) 179, 283
BstC8I GCNNGC 1 cut(s) 13
BstKTI GATC 1 cut(s) 310
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 90, 195
BstNI CCWGG 1 cut(s) 41
BstSCI CCNGG 3 cut(s) 39, 117, 118
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 71
BveI ACCTGC 1 cut(s) 142
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 11
Cfr9I CCCGGG 1 cut(s) 118
Csp6I GTAC 1 cut(s) 220
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 18, 25, 206
CviKI_1 RGCY 3 cut(s) 18, 25, 206
CviQI GTAC 1 cut(s) 220
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eam1104I CTCTTC 2 cut(s) 179, 283
EarI CTCTTC 2 cut(s) 179, 283
EciI GGCGGA 1 cut(s) 243
Eco88I CYCGRG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 173, 216, 273
FatI CATG 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 16, 85
Fsp4HI GCNGC 2 cut(s) 16, 85
FspBI CTAG 1 cut(s) 322
GluI GCNGC 2 cut(s) 16, 85
GsuI CTGGAG 1 cut(s) 40
HapII CCGG 2 cut(s) 12, 119
Hin1II CATG 1 cut(s) 175
HinfI GANTC 2 cut(s) 49, 278
HpaII CCGG 2 cut(s) 12, 119
HphI GGTGA 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 31, 93, 151, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 195
Hsp92II CATG 1 cut(s) 175
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 307
LguI GCTCTTC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 66
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MboII GAAGA 5 cut(s) 27, 193, 196, 287, 300
MhlI GDGCHC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 2 cut(s) 15, 159
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 235
MspI CCGG 2 cut(s) 12, 119
MspR9I CCNGG 3 cut(s) 41, 119, 120
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 90, 195
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 119, 120
NdeII GATC 1 cut(s) 307
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 179
PctI GAATGC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 2 cut(s) 49, 278
PkrI GCNGC 2 cut(s) 17, 86
Psp6I CCWGG 1 cut(s) 39
PspGI CCWGG 1 cut(s) 39
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
SapI GCTCTTC 1 cut(s) 179
SatI GCNGC 2 cut(s) 16, 85
Sau3AI GATC 1 cut(s) 307
ScrFI CCNGG 3 cut(s) 41, 119, 120
SduI GDGCHC 1 cut(s) 297
SetI ASST 3 cut(s) 133, 150, 156
SfaNI GCATC 1 cut(s) 165
SgrAI CRCCGGYG 1 cut(s) 11
SmaI CCCGGG 1 cut(s) 120
SsiI CCGC 2 cut(s) 15, 228
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 3 cut(s) 39, 117, 118
TatI WGTACW 1 cut(s) 219
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 49, 278
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 118
XmaI CCCGGG 1 cut(s) 118
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.