RchiOBHm_Chr4g0435171

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014327
Physical Location & Seq
Forward (+)
58752733 .. 58753699
967 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40360

Sequence Viewer

Length: 351 bp
ATGTCGTTCGCAGGCGGCAGCAGGAGGTGGCAGTTGCGGTATTCATCTCTGGCGGTGGCGTTGACCGTGATGTCGGTTTTACAGATTTGGGTCTGCTCCGACGACCGGTACTGCAAAGCAGGGGCAATTCGGGTACTTCCCGCACCAGGAAATGTAAATCAGCATCATCATCCTCATGTAACATCACAGCACCCAGAAGAACATGAAAAGAAGAAGAAGGCTAGTAAAGAGGAGCTGTTTCGTAAGTTCTTCAGCGGAATATCATCGGCTTCAAAATTGAACAAAACCGAAAAGGGATTCGAAGATAGCAAAAGAAGAGTGCCCAGTTGCCCAGATCCTCTCCACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.13

Weight (kDa)

9.72

Isoelectric Point (pI)

66.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014327)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25425 AT3G25905
fragaria_vesca FvH4_4g27360
prunus_persica Prupe.1G311100_v2.0.a1
pyrus_communis pycom13g03640 pycom16g03690
rosa_chinensis RchiOBHm_Chr4g0435171
rosa_laevigata RLG00000006612 RLG00000006613
rosa_multiflora Rmu_ssc0000339.1_g000033
rosa_roxburghii Rroxscaffold_5G00376390
rosa_rugosa Rorug04G0282700
rosa_samantha Rh4AG338500 Rh4BG346600 Rh4CG361100 Rh4DG341000
rosa_wichuraiana Rw4G029520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AciI CCGC 5 cut(s) 15, 37, 53, 141, 255
AclWI GGATC 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 235
AfaI GTAC 2 cut(s) 110, 135
AfiI CCNNNNNNNGG 2 cut(s) 105, 146
AgeI ACCGGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 273, 280
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
AlwI GGATC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 18
AsiGI ACCGGT 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 147
BfaI CTAG 2 cut(s) 222, 349
BisI GCNGC 2 cut(s) 16, 19
BlsI GCNGC 2 cut(s) 17, 20
Bme1390I CCNGG 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 105
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 146
Bse118I RCCGGY 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 105, 146
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 324
BseXI GCAGC 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 106
BshTI ACCGGT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 1 cut(s) 106
BslI CCNNNNNNNGG 2 cut(s) 105, 146
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 5 cut(s) 15, 37, 53, 141, 255
BspPI GGATC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 105
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 105
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMCI CGRYCG 1 cut(s) 106
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BtsCI GGATG 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 105
Csp6I GTAC 2 cut(s) 109, 134
CspAI ACCGGT 1 cut(s) 105
CviAII CATG 2 cut(s) 176, 203
CviJI RGCY 3 cut(s) 221, 235, 269
CviKI_1 RGCY 3 cut(s) 221, 235, 269
CviQI GTAC 2 cut(s) 109, 134
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 145
FaeI CATG 2 cut(s) 179, 206
FaiI YATR 2 cut(s) 177, 204
FatI CATG 2 cut(s) 175, 202
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 16, 19
FokI GGATG 1 cut(s) 156
Fsp4HI GCNGC 2 cut(s) 16, 19
FspBI CTAG 2 cut(s) 222, 349
GluI GCNGC 2 cut(s) 16, 19
HapII CCGG 1 cut(s) 106
Hin1II CATG 2 cut(s) 179, 206
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 1 cut(s) 297
HpaII CCGG 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 63
Hpy188I TCNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 63
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 114
Hsp92II CATG 2 cut(s) 179, 206
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 2 cut(s) 101, 232
LpnPI CCDG 9 cut(s) 7, 35, 105, 119, 132, 159, 207, 337, 345
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 222, 349
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 6 cut(s) 209, 223, 226, 241, 314, 327
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 126, 275
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 18, 183, 223, 348
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 147
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 179, 206
NspV TTCGAA 1 cut(s) 300
PfeI GAWTC 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 105
PkrI GCNGC 2 cut(s) 17, 20
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 334
RsaI GTAC 2 cut(s) 110, 135
RsaNI GTAC 2 cut(s) 109, 134
RseI CAYNNNNRTG 1 cut(s) 174
SatI GCNGC 2 cut(s) 16, 19
Sau3AI GATC 1 cut(s) 334
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 324
SetI ASST 2 cut(s) 29, 237
SfaNI GCATC 1 cut(s) 172
SfuI TTCGAA 1 cut(s) 300
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 2 cut(s) 126, 275
SsiI CCGC 5 cut(s) 15, 37, 53, 141, 255
SspMI CTAG 2 cut(s) 222, 349
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 300
TasI AATT 2 cut(s) 126, 275
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 1 cut(s) 297
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 33, 219
XspI CTAG 2 cut(s) 222, 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.